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uncharacterized protein Dmel_CG6059 [Drosophila melanogaster]
Protein Classification
List of domain hits
Name
Accession
Description
Interval
E-value
Smc super family
cl34174 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
251-524
2.52e-10
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
COG1196 :Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 64.57
E-value: 2.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 251 R LL H L NKELVAVVQQNE EL QAA E KDFM EL A A TNEA L KQRSDR L SR E NHT L TKS L RIMED E KNK L QTS L KVS E GLNDAQRR 330
Cdd:COG1196 230 L LL K L RELEAELEELEA EL EEL E AELE EL E A ELAE L EAELEE L RL E LEE L ELE L EEAQA E EYE L LAE L ARL E QDIARLEE 309
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 331 DKLD LE LARRSA E RDAKK kaddsmi LE RRFHL L AKKNT EL NDQVLVNQN EL KVQ E KKMLM A TAK L N EA IRQKE E IARSRD 410
Cdd:COG1196 310 RRRE LE ERLEEL E EELAE ------- LE EELEE L EEELE EL EEELEEAEE EL EEA E AELAE A EEA L L EA EAELA E AEEELE 382
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 411 K L RA E ISRLNDIV A GVRHEIASIRHQMQD LL TD L L R ANKQ L D E KDLQVQKIAR E KR E QSLE L ND A YKKIDGI EE TLALKS 490
Cdd:COG1196 383 E L AE E LLEALRAA A ELAAQLEELEEAEEA LL ER L E R LEEE L E E LEEALAELEE E EE E EEEA L EE A AEEEAEL EE EEEALL 462
250 260 270
....*....|....*....|....*....|....
gi 24650536 491 E R L EV L QV E LQQKQQEF A NVKKQMEVIQSEKVM L 524
Cdd:COG1196 463 E L L AE L LE E AALLEAAL A ELLEELAEAAARLLL L 496
SMC_prok_B super family
cl37069 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
425-715
4.28e-10
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
TIGR02168 :Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 63.92
E-value: 4.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 425 GV R H EI ASIRHQMQD L LTDLLRAN K Q L D E KDLQVQKIAR E KREQSL EL NDAYKK I DGIEET LA LKSERL E V L QVELQ Q KQ 504
Cdd:TIGR02168 674 ER R R EI EELEEKIEE L EEKIAELE K A L A E LRKELEELEE E LEQLRK EL EELSRQ I SALRKD LA RLEAEV E Q L EERIA Q LS 753
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 505 Q E FANVKKQM E VIQSEKVMLMKTMDMCSRDRST L QNTMTK L THQINQMTSS L AINEK E ISS L KNQIEQ L NRTVKQKQNE I 584
Cdd:TIGR02168 754 K E LTELEAEI E ELEERLEEAEEELAEAEAEIEE L EAQIEQ L KEELKALREA L DELRA E LTL L NEEAAN L RERLESLERR I 833
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 585 H A KS R L L ASTKTDLR E MKIRL E QA A HT I DTD E KRFKNMACA L DEVTK E KSLVGLQMVRRND E VRL L R E K L DMMQKAIDRG 664
Cdd:TIGR02168 834 A A TE R R L EDLEEQIE E LSEDI E SL A AE I EEL E ELIEELESE L EALLN E RASLEEALALLRS E LEE L S E E L RELESKRSEL 913
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 665 TMQY --- NQRVEDIR L ---- L KLEVV NL RTS ------------ HECMQREVGNKAAM R HDVI RLE RQLNQ 715
Cdd:TIGR02168 914 RREL eel REKLAQLE L rleg L EVRID NL QER lseeysltleea EALENKIEDDEEEA R RRLK RLE NKIKE 983
Name
Accession
Description
Interval
E-value
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
251-524
2.52e-10
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 64.57
E-value: 2.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 251 R LL H L NKELVAVVQQNE EL QAA E KDFM EL A A TNEA L KQRSDR L SR E NHT L TKS L RIMED E KNK L QTS L KVS E GLNDAQRR 330
Cdd:COG1196 230 L LL K L RELEAELEELEA EL EEL E AELE EL E A ELAE L EAELEE L RL E LEE L ELE L EEAQA E EYE L LAE L ARL E QDIARLEE 309
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 331 DKLD LE LARRSA E RDAKK kaddsmi LE RRFHL L AKKNT EL NDQVLVNQN EL KVQ E KKMLM A TAK L N EA IRQKE E IARSRD 410
Cdd:COG1196 310 RRRE LE ERLEEL E EELAE ------- LE EELEE L EEELE EL EEELEEAEE EL EEA E AELAE A EEA L L EA EAELA E AEEELE 382
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 411 K L RA E ISRLNDIV A GVRHEIASIRHQMQD LL TD L L R ANKQ L D E KDLQVQKIAR E KR E QSLE L ND A YKKIDGI EE TLALKS 490
Cdd:COG1196 383 E L AE E LLEALRAA A ELAAQLEELEEAEEA LL ER L E R LEEE L E E LEEALAELEE E EE E EEEA L EE A AEEEAEL EE EEEALL 462
250 260 270
....*....|....*....|....*....|....
gi 24650536 491 E R L EV L QV E LQQKQQEF A NVKKQMEVIQSEKVM L 524
Cdd:COG1196 463 E L L AE L LE E AALLEAAL A ELLEELAEAAARLLL L 496
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
425-715
4.28e-10
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 63.92
E-value: 4.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 425 GV R H EI ASIRHQMQD L LTDLLRAN K Q L D E KDLQVQKIAR E KREQSL EL NDAYKK I DGIEET LA LKSERL E V L QVELQ Q KQ 504
Cdd:TIGR02168 674 ER R R EI EELEEKIEE L EEKIAELE K A L A E LRKELEELEE E LEQLRK EL EELSRQ I SALRKD LA RLEAEV E Q L EERIA Q LS 753
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 505 Q E FANVKKQM E VIQSEKVMLMKTMDMCSRDRST L QNTMTK L THQINQMTSS L AINEK E ISS L KNQIEQ L NRTVKQKQNE I 584
Cdd:TIGR02168 754 K E LTELEAEI E ELEERLEEAEEELAEAEAEIEE L EAQIEQ L KEELKALREA L DELRA E LTL L NEEAAN L RERLESLERR I 833
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 585 H A KS R L L ASTKTDLR E MKIRL E QA A HT I DTD E KRFKNMACA L DEVTK E KSLVGLQMVRRND E VRL L R E K L DMMQKAIDRG 664
Cdd:TIGR02168 834 A A TE R R L EDLEEQIE E LSEDI E SL A AE I EEL E ELIEELESE L EALLN E RASLEEALALLRS E LEE L S E E L RELESKRSEL 913
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 665 TMQY --- NQRVEDIR L ---- L KLEVV NL RTS ------------ HECMQREVGNKAAM R HDVI RLE RQLNQ 715
Cdd:TIGR02168 914 RREL eel REKLAQLE L rleg L EVRID NL QER lseeysltleea EALENKIEDDEEEA R RRLK RLE NKIKE 983
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
267-655
1.14e-09
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 62.39
E-value: 1.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 267 EEL QAA E KDFME L AATNEALK Q RSD RL S RE NHTLTK s LRIMED EK NKLQTSLKVS E glndaqrrdkld L E LAR R SA E RDA 346
Cdd:TIGR02169 177 EEL EEV E ENIER L DLIIDEKR Q QLE RL R RE REKAER - YQALLK EK REYEGYELLK E ------------ K E ALE R QK E AIE 243
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 347 KKK A DDSMI LE RRFHLLAKKNTE L ND - QV L VNQNEL K VQEKKM lmatakl N E AI R Q KE E I A rsrd K L R AEI SR L NDI vag 425
Cdd:TIGR02169 244 RQL A SLEEE LE KLTEEISELEKR L EE i EQ L LEELNK K IKDLGE ------- E E QL R V KE K I G ---- E L E AEI AS L ERS --- 309
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 426 vrhe IA SIRHQMQ D LLTD L LRANKQL D EKDLQVQKIA RE KR E QSLEL ndaykki D GIE E TL A LKS E R LE V L QV EL QQKQQ 505
Cdd:TIGR02169 310 ---- IA EKERELE D AEER L AKLEAEI D KLLAEIEELE RE IE E ERKRR ------- D KLT E EY A ELK E E LE D L RA EL EEVDK 378
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 506 EFA NVKK qmeviqs E KVMLMKTMDMCS R DRST L QNTMTK L THQINQMTSS LA INEKE I SSLKNQ I EQ L NRTVKQ K QN EI H 585
Cdd:TIGR02169 379 EFA ETRD ------- E LKDYREKLEKLK R EINE L KRELDR L QEELQRLSEE LA DLNAA I AGIEAK I NE L EEEKED K AL EI K 451
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 586 AKSRL L ASTKT DL REMKIR L EQAAHTI D TD EK RFKNMACA L D E VTKEKSLVGLQMVRRNDEVRL L REKLD 655
Cdd:TIGR02169 452 KQEWK L EQLAA DL SKYEQE L YDLKEEY D RV EK ELSKLQRE L A E AEAQARASEERVRGGRAVEEV L KASIQ 521
CCDC158
pfam15921 Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
118-689
2.97e-07
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain]
Cd Length: 1112
Bit Score: 54.35
E-value: 2.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 118 E AMMEH LR ES L ED A W R N - ED ATKNR E ETMQ L Q lmslvrsd Q S NM T KGT T DHVPI S ---- N K D L QL HR L V -- L RE R DRLAA 190
Cdd:pfam15921 323 E STVSQ LR SE L RE A K R M y ED KIEEL E KQLV L A -------- N S EL T EAR T ERDQF S qesg N L D D QL QK L L ad L HK R EKELS 394
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 191 EL K DHQ KRL QTNRLYSE sve VM I EVYKEIISKL N ARAKKA E LDNFRLEHR C NVE qdkyedrllh LNKELV A VVQQ NE E L Q 270
Cdd:pfam15921 395 LE K EQN KRL WDRDTGNS --- IT I DHLRRELDDR N MEVQRL E ALLKAMKSE C QGQ ---------- MERQMA A IQGK NE S L E 461
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 271 AAEKDFME L AA T N E A L KQRSDR L SRENH TL TK S L R IME D EKNK LQ TSLKVS E GL N D -- AQR R DKL DL E L ARRS aerdakk 348
Cdd:pfam15921 462 KVSSLTAQ L ES T K E M L RKVVEE L TAKKM TL ES S E R TVS D LTAS LQ EKERAI E AT N A ei TKL R SRV DL K L QELQ ------- 534
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 349 kaddsmilerrf HL LAKKNTEL N D Q VLVNQNE L KVQ EK K mlmata K LN E AI RQ KE E iarsrd KLRAEISRLNDIVAGVRH 428
Cdd:pfam15921 535 ------------ HL KNEGDHLR N V Q TECEALK L QMA EK D ------ K VI E IL RQ QI E ------ NMTQLVGQHGRTAGAMQV 590
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 429 E I A SIRHQMQ D LLTD L LRANKQL D E KD LQVQKI ar E K R EQS LEL NDAYKKID G I E ETL A --- L K S ER LEV L Q v E LQQKQQ 505
Cdd:pfam15921 591 E K A QLEKEIN D RRLE L QEFKILK D K KD AKIREL -- E A R VSD LEL EKVKLVNA G S E RLR A vkd I K Q ER DQL L N - E VKTSRN 667
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 506 E FANVKKQM EV IQSE kvmlmktmdmc S R DR S T - LQN T MT KL TH Q INQMT S S L AINEKEIS S LKNQIEQLNRTVKQK Q NE I 584
Cdd:pfam15921 668 E LNSLSEDY EV LKRN ----------- F R NK S E e MET T TN KL KM Q LKSAQ S E L EQTRNTLK S MEGSDGHAMKVAMGM Q KQ I 736
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 585 H AK S rllas TKT D LREM KI RLEQA A H T IDTD EK R F ----- KNMACA L DE V TK EK SLVGLQMVRRNDEV R L L R EK LDM M QK 659
Cdd:pfam15921 737 T AK R ----- GQI D ALQS KI QFLEE A M T NANK EK H F lkeek NKLSQE L ST V AT EK NKMAGELEVLRSQE R R L K EK VAN M EV 811
570 580 590
....*....|....*....|....*....|
gi 24650536 660 A I D RGTM Q YNQRVED I RLLKL E V V N L RTS H 689
Cdd:pfam15921 812 A L D KASL Q FAECQDI I QRQEQ E S V R L KLQ H 841
PRK02224
PRK02224 DNA double-strand break repair Rad50 ATPase;
118-599
5.46e-06
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain]
Cd Length: 880
Bit Score: 50.42
E-value: 5.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 118 EA MM E H LRE SLEDAW R NEDATKNREETMQLQ L MS L vr SDQSNMTKGTTDHVPISNKDLQLH R LV L RE RD rla A EL K D hqk 197
Cdd:PRK02224 257 EA EI E D LRE TIAETE R EREELAEEVRDLRER L EE L -- EEERDDLLAEAGLDDADAEAVEAR R EE L ED RD --- E EL R D --- 328
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 198 RL QTN R LYSESVEVMI E VYK E IISK L NA RA KKAELDNFR LE --- HRCNVEQDKYEDRLLH L NK E LVAV vqq N E ELQA A EK 274
Cdd:PRK02224 329 RL EEC R VAAQAHNEEA E SLR E DADD L EE RA EELREEAAE LE sel EEAREAVEDRREEIEE L EE E IEEL --- R E RFGD A PV 405
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 275 D FMELAATN E A L KQRS D R L SRENHT L TKS LR IMEDEKNKLQTS L K ---------------- V SEGLN D AQ R RDK L DL EL A 338
Cdd:PRK02224 406 D LGNAEDFL E E L REER D E L REREAE L EAT LR TARERVEEAEAL L E agkcpecgqpvegsph V ETIEE D RE R VEE L EA EL E 485
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 339 RRSA E RDAKKK ---- A D D SMIL E R R FHL L AKKNTE L ND qv L VNQNELKVQ EK kmlma TAKLN E AIRQKE E IARSRDKL R A 414
Cdd:PRK02224 486 DLEE E VEEVEE rler A E D LVEA E D R IER L EERRED L EE -- L IAERRETIE EK ----- RERAE E LRERAA E LEAEAEEK R E 558
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 415 EISRLNDIVAGV R H E I A SIRHQMQD L LTDLLRANK --- Q L DEKDLQVQK I A -- REKRE QSL ELND AYK kidgie E T LA L K 489
Cdd:PRK02224 559 AAAEAEEEAEEA R E E V A ELNSKLAE L KERIESLER irt L L AAIADAEDE I E rl REKRE ALA ELND ERR ------ E R LA E K 632
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 490 S ER LEV L QV E LQQKQQ E F A NVK K QMEVIQS E K V ml MKTM D MCSRD R ST LQ N tmtklth Q I NQMTSS L aine K E ISS L KNQ 569
Cdd:PRK02224 633 R ER KRE L EA E FDEARI E E A RED K ERAEEYL E Q V -- EEKL D ELREE R DD LQ A ------- E I GAVENE L ---- E E LEE L RER 699
490 500 510
....*....|....*....|....*....|
gi 24650536 570 I E Q L NRT V k QKQNEIHAKSRL L A S TKT DLR 599
Cdd:PRK02224 700 R E A L ENR V - EALEALYDEAEE L E S MYG DLR 728
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
429-663
3.45e-05
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 47.07
E-value: 3.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 429 EI A SIRHQMQD L LTDLLRAN K Q L DEKDLQVQKIAREKREQSLELNDAYKK I DGI E ET LA LKSER L EV L QV E LQQKQQ E FA 508
Cdd:COG4942 21 AA A EAEAELEQ L QQEIAELE K E L AALKKEEKALLKQLAALERRIAALARR I RAL E QE LA ALEAE L AE L EK E IAELRA E LE 100
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 509 NV K KQME viqsekv M L MKTMDMCS R drstl Q NTMTK L THQ -- INQMTSS L AINEKEISSLKN Q I E Q L nrtv KQKQN E IH A 586
Cdd:COG4942 101 AQ K EELA ------- E L LRALYRLG R ----- Q PPLAL L LSP ed FLDAVRR L QYLKYLAPARRE Q A E E L ---- RADLA E LA A 164
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24650536 587 KSRL L ASTKTD L REMKIR LE QAAHTIDTDEKRFKNM aca L DEVT KE KSLVGLQMVRRND E VRL L REKLDMMQKAIDR 663
Cdd:COG4942 165 LRAE L EAERAE L EALLAE LE EERAALEALKAERQKL --- L ARLE KE LAELAAELAELQQ E AEE L EALIARLEAEAAA 238
Name
Accession
Description
Interval
E-value
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
251-524
2.52e-10
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 64.57
E-value: 2.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 251 R LL H L NKELVAVVQQNE EL QAA E KDFM EL A A TNEA L KQRSDR L SR E NHT L TKS L RIMED E KNK L QTS L KVS E GLNDAQRR 330
Cdd:COG1196 230 L LL K L RELEAELEELEA EL EEL E AELE EL E A ELAE L EAELEE L RL E LEE L ELE L EEAQA E EYE L LAE L ARL E QDIARLEE 309
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 331 DKLD LE LARRSA E RDAKK kaddsmi LE RRFHL L AKKNT EL NDQVLVNQN EL KVQ E KKMLM A TAK L N EA IRQKE E IARSRD 410
Cdd:COG1196 310 RRRE LE ERLEEL E EELAE ------- LE EELEE L EEELE EL EEELEEAEE EL EEA E AELAE A EEA L L EA EAELA E AEEELE 382
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 411 K L RA E ISRLNDIV A GVRHEIASIRHQMQD LL TD L L R ANKQ L D E KDLQVQKIAR E KR E QSLE L ND A YKKIDGI EE TLALKS 490
Cdd:COG1196 383 E L AE E LLEALRAA A ELAAQLEELEEAEEA LL ER L E R LEEE L E E LEEALAELEE E EE E EEEA L EE A AEEEAEL EE EEEALL 462
250 260 270
....*....|....*....|....*....|....
gi 24650536 491 E R L EV L QV E LQQKQQEF A NVKKQMEVIQSEKVM L 524
Cdd:COG1196 463 E L L AE L LE E AALLEAAL A ELLEELAEAAARLLL L 496
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
425-715
4.28e-10
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 63.92
E-value: 4.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 425 GV R H EI ASIRHQMQD L LTDLLRAN K Q L D E KDLQVQKIAR E KREQSL EL NDAYKK I DGIEET LA LKSERL E V L QVELQ Q KQ 504
Cdd:TIGR02168 674 ER R R EI EELEEKIEE L EEKIAELE K A L A E LRKELEELEE E LEQLRK EL EELSRQ I SALRKD LA RLEAEV E Q L EERIA Q LS 753
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 505 Q E FANVKKQM E VIQSEKVMLMKTMDMCSRDRST L QNTMTK L THQINQMTSS L AINEK E ISS L KNQIEQ L NRTVKQKQNE I 584
Cdd:TIGR02168 754 K E LTELEAEI E ELEERLEEAEEELAEAEAEIEE L EAQIEQ L KEELKALREA L DELRA E LTL L NEEAAN L RERLESLERR I 833
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 585 H A KS R L L ASTKTDLR E MKIRL E QA A HT I DTD E KRFKNMACA L DEVTK E KSLVGLQMVRRND E VRL L R E K L DMMQKAIDRG 664
Cdd:TIGR02168 834 A A TE R R L EDLEEQIE E LSEDI E SL A AE I EEL E ELIEELESE L EALLN E RASLEEALALLRS E LEE L S E E L RELESKRSEL 913
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 665 TMQY --- NQRVEDIR L ---- L KLEVV NL RTS ------------ HECMQREVGNKAAM R HDVI RLE RQLNQ 715
Cdd:TIGR02168 914 RREL eel REKLAQLE L rleg L EVRID NL QER lseeysltleea EALENKIEDDEEEA R RRLK RLE NKIKE 983
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
267-655
1.14e-09
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 62.39
E-value: 1.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 267 EEL QAA E KDFME L AATNEALK Q RSD RL S RE NHTLTK s LRIMED EK NKLQTSLKVS E glndaqrrdkld L E LAR R SA E RDA 346
Cdd:TIGR02169 177 EEL EEV E ENIER L DLIIDEKR Q QLE RL R RE REKAER - YQALLK EK REYEGYELLK E ------------ K E ALE R QK E AIE 243
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 347 KKK A DDSMI LE RRFHLLAKKNTE L ND - QV L VNQNEL K VQEKKM lmatakl N E AI R Q KE E I A rsrd K L R AEI SR L NDI vag 425
Cdd:TIGR02169 244 RQL A SLEEE LE KLTEEISELEKR L EE i EQ L LEELNK K IKDLGE ------- E E QL R V KE K I G ---- E L E AEI AS L ERS --- 309
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 426 vrhe IA SIRHQMQ D LLTD L LRANKQL D EKDLQVQKIA RE KR E QSLEL ndaykki D GIE E TL A LKS E R LE V L QV EL QQKQQ 505
Cdd:TIGR02169 310 ---- IA EKERELE D AEER L AKLEAEI D KLLAEIEELE RE IE E ERKRR ------- D KLT E EY A ELK E E LE D L RA EL EEVDK 378
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 506 EFA NVKK qmeviqs E KVMLMKTMDMCS R DRST L QNTMTK L THQINQMTSS LA INEKE I SSLKNQ I EQ L NRTVKQ K QN EI H 585
Cdd:TIGR02169 379 EFA ETRD ------- E LKDYREKLEKLK R EINE L KRELDR L QEELQRLSEE LA DLNAA I AGIEAK I NE L EEEKED K AL EI K 451
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 586 AKSRL L ASTKT DL REMKIR L EQAAHTI D TD EK RFKNMACA L D E VTKEKSLVGLQMVRRNDEVRL L REKLD 655
Cdd:TIGR02169 452 KQEWK L EQLAA DL SKYEQE L YDLKEEY D RV EK ELSKLQRE L A E AEAQARASEERVRGGRAVEEV L KASIQ 521
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
188-498
1.18e-09
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 62.26
E-value: 1.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 188 L AA ELK DHQKR L QTNR L ys ESV E VMI E VYKEIISK L N A RAKKA E LDNFR LE HRCNVEQDKY E DRL L H L NKELVAVVQQNE 267
Cdd:COG1196 218 L KE ELK ELEAE L LLLK L -- REL E AEL E ELEAELEE L E A ELEEL E AELAE LE AELEELRLEL E ELE L E L EEAQAEEYELLA 295
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 268 EL QAA E K D FME L AATNEA L KQ R SDR L SR E NHT L TKS L RIM E D E KNK L QTS L KVS E GLNDAQRRDKLDL E L A RRS AE RDAK 347
Cdd:COG1196 296 EL ARL E Q D IAR L EERRRE L EE R LEE L EE E LAE L EEE L EEL E E E LEE L EEE L EEA E EELEEAEAELAEA E E A LLE AE AELA 375
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 348 KKADDSMI L ERRFHLLAKKNT EL ND Q VLVNQNELKVQEKKMLMATAK L N E AIRQKE E IARSRDKLRAEISRLNDIV A GVR 427
Cdd:COG1196 376 EAEEELEE L AEELLEALRAAA EL AA Q LEELEEAEEALLERLERLEEE L E E LEEALA E LEEEEEEEEEALEEAAEEE A ELE 455
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24650536 428 H E IASIRHQMQD LL TDLLRANKQ L D E KDLQVQKI A REKREQSLELN D AYKKID G IEET L A L KSE R LEVLQ V 498
Cdd:COG1196 456 E E EEALLELLAE LL EEAALLEAA L A E LLEELAEA A ARLLLLLEAEA D YEGFLE G VKAA L L L AGL R GLAGA V 526
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
278-620
1.38e-09
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 62.00
E-value: 1.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 278 EL AATN E A L KQRSDR L SRENHT L T K S L RIM E D E KNK L Q tsl K VS E G L NDAQRRDKL DL ELARRSA E RDAKKK A DD S MI L E 357
Cdd:TIGR02168 681 EL EEKI E E L EEKIAE L EKALAE L R K E L EEL E E E LEQ L R --- K EL E E L SRQISALRK DL ARLEAEV E QLEERI A QL S KE L T 757
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 358 R rfhl L AKKNT EL NDQVLVNQN EL KVQ E KKMLMAT A KLNEAIRQKEEIARSR D K LRAE ISR LN DIV A GV R HEIA S IRHQM 437
Cdd:TIGR02168 758 E ---- L EAEIE EL EERLEEAEE EL AEA E AEIEELE A QIEQLKEELKALREAL D E LRAE LTL LN EEA A NL R ERLE S LERRI 833
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 438 QDLLTD L LRANK Q LD E KDLQVQKI A rekreqs L E LNDAYKK I DGI E ET L ALKSERLEV L QVE L QQKQQ E FANVKKQMEVI 517
Cdd:TIGR02168 834 AATERR L EDLEE Q IE E LSEDIESL A ------- A E IEELEEL I EEL E SE L EALLNERAS L EEA L ALLRS E LEELSEELREL 906
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 518 Q S EKVM L MKTMDMCSRDRST L QNTMTK L THQ I NQMTSS L A ---- INEK E ISS L K N Q IE ---- QLN R TV K QKQ N E I HA --- 586
Cdd:TIGR02168 907 E S KRSE L RRELEELREKLAQ L ELRLEG L EVR I DNLQER L S eeys LTLE E AEA L E N K IE ddee EAR R RL K RLE N K I KE lgp 986
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 24650536 587 ------------ K S R L -- L AST K T DL R E M K IR LE Q A AHT ID TD - EK RFK 620
Cdd:TIGR02168 987 vnlaaieeyeel K E R Y df L TAQ K E DL T E A K ET LE E A IEE ID RE a RE RFK 1035
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
220-520
2.40e-09
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 61.23
E-value: 2.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 220 I SK L NARAKKA E LDNFR LE hrcn VEQDKYEDR L LH L NK EL VAVVQQN EEL Q ---- A AE KD FME L A A TN E A L KQ R SDR LS R 295
Cdd:TIGR02168 679 I EE L EEKIEEL E EKIAE LE ---- KALAELRKE L EE L EE EL EQLRKEL EEL S rqis A LR KD LAR L E A EV E Q L EE R IAQ LS K 754
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 296 E NHT L TKSLRIM E DEKNKLQTS L KVS E glnda QRRDK L DLELARRSA E RD A KKK A D D S mi L ERRFH LL AKKNTE L NDQVL 375
Cdd:TIGR02168 755 E LTE L EAEIEEL E ERLEEAEEE L AEA E ----- AEIEE L EAQIEQLKE E LK A LRE A L D E -- L RAELT LL NEEAAN L RERLE 827
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 376 VNQNELKVQ E KKMLMATAKLN E AIRQK E EI A RSRDK L RAE I SR L NDIVAGVRH E I AS IRHQMQD L LTD L LRANKQ L D E KD 455
Cdd:TIGR02168 828 SLERRIAAT E RRLEDLEEQIE E LSEDI E SL A AEIEE L EEL I EE L ESELEALLN E R AS LEEALAL L RSE L EELSEE L R E LE 907
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24650536 456 LQVQKIA RE KR E QSLE L NDAYKKID G I E ETLALKS ERL - E VLQVE L QQKQQEFANVKKQM E VIQSE 520
Cdd:TIGR02168 908 SKRSELR RE LE E LREK L AQLELRLE G L E VRIDNLQ ERL s E EYSLT L EEAEALENKIEDDE E EARRR 973
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
335-851
3.85e-09
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 60.72
E-value: 3.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 335 LE LARRS AER d AKKKADDSMI LE RRFH LL AKKNT E LNDQV L vn QN EL KVQ E KKMLMAT A K L N E AIRQK EE IARSRDK L RA 414
Cdd:COG1196 205 LE RQAEK AER - YRELKEELKE LE AELL LL KLREL E AELEE L -- EA EL EEL E AELEELE A E L A E LEAEL EE LRLELEE L EL 281
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 415 E ISRLNDIVAGVRH E I A SIRHQMQD L LTDLLRANKQ L D E KDLQVQKIAR E KR E QSL EL NDA ykkidgi EE T L ALKS E R LE 494
Cdd:COG1196 282 E LEEAQAEEYELLA E L A RLEQDIAR L EERRRELEER L E E LEEELAELEE E LE E LEE EL EEL ------- EE E L EEAE E E LE 354
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 495 VLQV EL QQKQQEFANVKKQMEVIQS E KVM L MKTMDMCS R DRST L QNTMTK L THQINQMTSS L AIN E K E ISS L KNQIEQ L N 574
Cdd:COG1196 355 EAEA EL AEAEEALLEAEAELAEAEE E LEE L AEELLEAL R AAAE L AAQLEE L EEAEEALLER L ERL E E E LEE L EEALAE L E 434
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 575 RTVKQKQNEIHAKSRLL A STKTDLREMKIR L EQAAHTIDTD E KRFKNMACA L D E VTKEKS L VGLQMVRRNDEVRLLREK L 654
Cdd:COG1196 435 EEEEEEEEALEEAAEEE A ELEEEEEALLEL L AELLEEAALL E AALAELLEE L A E AAARLL L LLEAEADYEGFLEGVKAA L 514
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 655 DMMQKAIDR G TMQYNQR VE D irll KL E VVNLRTSHECM Q RE V GNKAAMRHDV I RLERQLNQE R L -------- KVS A YSEE 726
Cdd:COG1196 515 LLAGLRGLA G AVAVLIG VE A ---- AY E AALEAALAAAL Q NI V VEDDEVAAAA I EYLKAAKAG R A tflpldki RAR A ALAA 590
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 727 LSRPCR I HRWRV L LGK D P R RFELIRKIQQLLKRNIR L SVE R ENK A KEL A - E L EHVHE E FKRQMTNLPDPSVRQKLCIQQR 805
Cdd:COG1196 591 ALARGA I GAAVD L VAS D L R EADARYYVLGDTLLGRT L VAA R LEA A LRR A v T L AGRLR E VTLEGEGGSAGGSLTGGSRREL 670
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 24650536 806 INRRQTRQLKAMKAEL R IN E ID L KTR E H L IEGFQ E QLR L HHL E NKE 851
Cdd:COG1196 671 LAALLEAEAELEELAE R LA E EE L ELE E A L LAEEE E ERE L AEA E EER 716
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
394-778
6.93e-08
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 56.61
E-value: 6.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 394 K LNEA I RQKE E IA R SRD K LRA E ISRLNDIVAGVRHE I ASI R H Q MQD L LTD llr AN K QLDEKD L QVQ K IAR E KR E QSL E LN 473
Cdd:TIGR02169 157 K IIDE I AGVA E FD R KKE K ALE E LEEVEENIERLDLI I DEK R Q Q LER L RRE --- RE K AERYQA L LKE K REY E GY E LLK E KE 233
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 474 DAYKKIDG IE ET LA LKS E R LE V L QV E LQQKQQEFANVKKQM E VIQS ekvmlm K TM D MCSRDRSTLQNTMTK L THQ I NQMT 553
Cdd:TIGR02169 234 ALERQKEA IE RQ LA SLE E E LE K L TE E ISELEKRLEEIEQLL E ELNK ------ K IK D LGEEEQLRVKEKIGE L EAE I ASLE 307
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 554 S S L A IN E K E I sslknqi E QLNRTVKQKQN EI HAKSRLLASTKTDLR E MKI R LEQAAHTIDTDEKRFKNMACA L D EV T KE K 633
Cdd:TIGR02169 308 R S I A EK E R E L ------- E DAEERLAKLEA EI DKLLAEIEELEREIE E ERK R RDKLTEEYAELKEELEDLRAE L E EV D KE F 380
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 634 SLVGLQMVRRNDEVRL L REKLDMMQKAI DR GTMQYNQRV E DIRL L KLEVVNLRTSHECMQR E VGN KA A mrh DVIRL E RQ L 713
Cdd:TIGR02169 381 AETRDELKDYREKLEK L KREINELKREL DR LQEELQRLS E ELAD L NAAIAGIEAKINELEE E KED KA L --- EIKKQ E WK L 457
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24650536 714 N Q ERLKV S A Y SE EL SR pcrihrwrvllgkdpr RF E LIRKIQQ llkrnirlsv E RENKAK ELAE L E 778
Cdd:TIGR02169 458 E Q LAADL S K Y EQ EL YD ---------------- LK E EYDRVEK ---------- E LSKLQR ELAE A E 496
CCDC158
pfam15921 Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
118-689
2.97e-07
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain]
Cd Length: 1112
Bit Score: 54.35
E-value: 2.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 118 E AMMEH LR ES L ED A W R N - ED ATKNR E ETMQ L Q lmslvrsd Q S NM T KGT T DHVPI S ---- N K D L QL HR L V -- L RE R DRLAA 190
Cdd:pfam15921 323 E STVSQ LR SE L RE A K R M y ED KIEEL E KQLV L A -------- N S EL T EAR T ERDQF S qesg N L D D QL QK L L ad L HK R EKELS 394
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 191 EL K DHQ KRL QTNRLYSE sve VM I EVYKEIISKL N ARAKKA E LDNFRLEHR C NVE qdkyedrllh LNKELV A VVQQ NE E L Q 270
Cdd:pfam15921 395 LE K EQN KRL WDRDTGNS --- IT I DHLRRELDDR N MEVQRL E ALLKAMKSE C QGQ ---------- MERQMA A IQGK NE S L E 461
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 271 AAEKDFME L AA T N E A L KQRSDR L SRENH TL TK S L R IME D EKNK LQ TSLKVS E GL N D -- AQR R DKL DL E L ARRS aerdakk 348
Cdd:pfam15921 462 KVSSLTAQ L ES T K E M L RKVVEE L TAKKM TL ES S E R TVS D LTAS LQ EKERAI E AT N A ei TKL R SRV DL K L QELQ ------- 534
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 349 kaddsmilerrf HL LAKKNTEL N D Q VLVNQNE L KVQ EK K mlmata K LN E AI RQ KE E iarsrd KLRAEISRLNDIVAGVRH 428
Cdd:pfam15921 535 ------------ HL KNEGDHLR N V Q TECEALK L QMA EK D ------ K VI E IL RQ QI E ------ NMTQLVGQHGRTAGAMQV 590
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 429 E I A SIRHQMQ D LLTD L LRANKQL D E KD LQVQKI ar E K R EQS LEL NDAYKKID G I E ETL A --- L K S ER LEV L Q v E LQQKQQ 505
Cdd:pfam15921 591 E K A QLEKEIN D RRLE L QEFKILK D K KD AKIREL -- E A R VSD LEL EKVKLVNA G S E RLR A vkd I K Q ER DQL L N - E VKTSRN 667
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 506 E FANVKKQM EV IQSE kvmlmktmdmc S R DR S T - LQN T MT KL TH Q INQMT S S L AINEKEIS S LKNQIEQLNRTVKQK Q NE I 584
Cdd:pfam15921 668 E LNSLSEDY EV LKRN ----------- F R NK S E e MET T TN KL KM Q LKSAQ S E L EQTRNTLK S MEGSDGHAMKVAMGM Q KQ I 736
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 585 H AK S rllas TKT D LREM KI RLEQA A H T IDTD EK R F ----- KNMACA L DE V TK EK SLVGLQMVRRNDEV R L L R EK LDM M QK 659
Cdd:pfam15921 737 T AK R ----- GQI D ALQS KI QFLEE A M T NANK EK H F lkeek NKLSQE L ST V AT EK NKMAGELEVLRSQE R R L K EK VAN M EV 811
570 580 590
....*....|....*....|....*....|
gi 24650536 660 A I D RGTM Q YNQRVED I RLLKL E V V N L RTS H 689
Cdd:pfam15921 812 A L D KASL Q FAECQDI I QRQEQ E S V R L KLQ H 841
CwlO1
COG3883 Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
391-595
3.16e-07
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain]
Cd Length: 379
Bit Score: 53.68
E-value: 3.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 391 ATAK L N E AIRQK E EIARSR D K L R AE ISR LN DIVAGVRH E IASIRHQMQD L LTDLLR A NKQLD E KDLQVQKI AR EKREQSL 470
Cdd:COG3883 21 KQKE L S E LQAEL E AAQAEL D A L Q AE LEE LN EEYNELQA E LEALQAEIDK L QAEIAE A EAEIE E RREELGER AR ALYRSGG 100
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 471 ELN -- D AYKKIDGIEET L alks E RL EV L QVELQQKQQEFANV K KQMEVIQSE K VM L MKTMDMCSRDRST L QNTMTK L TH Q 548
Cdd:COG3883 101 SVS yl D VLLGSESFSDF L ---- D RL SA L SKIADADADLLEEL K ADKAELEAK K AE L EAKLAELEALKAE L EAAKAE L EA Q 176
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 24650536 549 INQMTSS LA INEK E ISSLKN Q IEQ L NRTVKQKQNEIH A KSRLL A STK 595
Cdd:COG3883 177 QAEQEAL LA QLSA E EAAAEA Q LAE L EAELAAAEAAAA A AAAAA A AAA 223
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
326-591
3.49e-07
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 54.29
E-value: 3.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 326 DAQRRDKLDL E LARRSAERDAKKKADDSMI L ERRFHL L AKKNT EL NDQVLVNQ NE LKVQ E KKMLMATAK L NEAI RQ K EE I 405
Cdd:TIGR02168 242 EELQEELKEA E EELEELTAELQELEEKLEE L RLEVSE L EEEIE EL QKELYALA NE ISRL E QQKQILRER L ANLE RQ L EE L 321
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 406 ARSRDK L RAEISR L NDIV A GVRHEIASIRHQMQD L LTD L LRANKQ L D E KDLQVQKIAREKREQSLELNDAYKK I DGIEET 485
Cdd:TIGR02168 322 EAQLEE L ESKLDE L AEEL A ELEEKLEELKEELES L EAE L EELEAE L E E LESRLEELEEQLETLRSKVAQLELQ I ASLNNE 401
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 486 LALKSE RLE V L QVELQQK QQE FANVK K QM E VIQ sekvmlmkt MDMCSRDRST L QNTMTK L THQINQMTSS L AINEK E ISS 565
Cdd:TIGR02168 402 IERLEA RLE R L EDRRERL QQE IEELL K KL E EAE --------- LKELQAELEE L EEELEE L QEELERLEEA L EELRE E LEE 472
250 260
....*....|....*....|....*.
gi 24650536 566 LKNQIEQLN R TVK Q K Q NEIHAKS RL L 591
Cdd:TIGR02168 473 AEQALDAAE R ELA Q L Q ARLDSLE RL Q 498
Mplasa_alph_rch
TIGR04523 helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
365-584
4.20e-07
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain]
Cd Length: 745
Bit Score: 53.87
E-value: 4.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 365 KK NT EL ND Q VLVNQN E LKVQEK - K MLMATAK L NEAIRQK E E iar SRDKLRAE IS RL N D I VAGVRHE I ASIRHQMQDLLTD 443
Cdd:TIGR04523 281 KK IK EL EK Q LNQLKS E ISDLNN q K EQDWNKE L KSELKNQ E K --- KLEEIQNQ IS QN N K I ISQLNEQ I SQLKKELTNSESE 357
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 444 LLRANKQ L D EK DLQVQ K IAR E KREQSL E LNDAYKK I DGI E ETLALKSERLEVLQVELQQK QQE FANVK K QM E VIQSEKVM 523
Cdd:TIGR04523 358 NSEKQRE L E EK QNEIE K LKK E NQSYKQ E IKNLESQ I NDL E SKIQNQEKLNQQKDEQIKKL QQE KELLE K EI E RLKETIIK 437
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24650536 524 LMKTMDMCSRDR S TLQNTMTK L THQINQMTSS L AINEKE I SSL K NQI EQ LNRTV K Q K QN E I 584
Cdd:TIGR04523 438 NNSEIKDLTNQD S VKELIIKN L DNTRESLETQ L KVLSRS I NKI K QNL EQ KQKEL K S K EK E L 498
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
377-588
1.25e-06
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 51.69
E-value: 1.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 377 NQN EL KVQEKKMLMATAK L NEAIRQKEEIARSRDK L RAE I SR L NDIVAGVRH E I A SIRHQMQD L LTDLLRANKQ L DEKDL 456
Cdd:COG4942 25 AEA EL EQLQQEIAELEKE L AALKKEEKALLKQLAA L ERR I AA L ARRIRALEQ E L A ALEAELAE L EKEIAELRAE L EAQKE 104
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 457 QVQKIA R E -------------- KR E QS L ELNDAYKKIDGIEETLALKS E R L EVLQV EL QQKQQ E FANVKKQM E VIQS E KV 522
Cdd:COG4942 105 ELAELL R A lyrlgrqpplalll SP E DF L DAVRRLQYLKYLAPARREQA E E L RADLA EL AALRA E LEAERAEL E ALLA E LE 184
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24650536 523 MLMKTM dmc SRDRSTL Q NTMTK L THQINQMTSS LA INEK E ISS L KNQ I EQ L NRTVKQKQNEIH A KS 588
Cdd:COG4942 185 EERAAL --- EALKAER Q KLLAR L EKELAELAAE LA ELQQ E AEE L EAL I AR L EAEAAAAAERTP A AG 247
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
389-620
2.34e-06
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 50.92
E-value: 2.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 389 L MATAKLNEAIRQKE E IARSRDK L RA EI SR L NDIV A GVRH E IASIRH Q MQD L LTDLLRANKQLDEKDLQVQKIAR E KR E Q 468
Cdd:COG4942 9 L LLALAAAAQADAAA E AEAELEQ L QQ EI AE L EKEL A ALKK E EKALLK Q LAA L ERRIAALARRIRALEQELAALEA E LA E L 88
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 469 SL E LNDAYKKIDGIE E T LA lks E R L EV L QVELQ Q ------- KQQE F ANVKKQMEVIQSEKVMLMKTMDMCSR D RST L QNT 541
Cdd:COG4942 89 EK E IAELRAELEAQK E E LA --- E L L RA L YRLGR Q pplalll SPED F LDAVRRLQYLKYLAPARREQAEELRA D LAE L AAL 165
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24650536 542 MTK L THQINQMTSS LA IN E K E ISS L KNQIEQLNRTVKQKQN E IHAKSRL LA STKTDLR E MKIRLEQAAHTIDTDEK R FK 620
Cdd:COG4942 166 RAE L EAERAELEAL LA EL E E E RAA L EALKAERQKLLARLEK E LAELAAE LA ELQQEAE E LEALIARLEAEAAAAAE R TP 244
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
384-592
4.36e-06
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 49.76
E-value: 4.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 384 Q EKKMLM A T A K L NEAIRQKE E IARSRDK L RA E ISR L NDIV A GVRHE IA SIRHQMQD L LTD L LRANKQ L D E KDLQVQKIAR 463
Cdd:COG4942 18 Q ADAAAE A E A E L EQLQQEIA E LEKELAA L KK E EKA L LKQL A ALERR IA ALARRIRA L EQE L AALEAE L A E LEKEIAELRA 97
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 464 E KRE Q SL EL ND ---- A Y KKIDGIEET L A L KS E ------- RL EV L QVELQQKQQEFANVKKQMEVIQSEKVM L MKTMDMCS 532
Cdd:COG4942 98 E LEA Q KE EL AE llra L Y RLGRQPPLA L L L SP E dfldavr RL QY L KYLAPARREQAEELRADLAELAALRAE L EAERAELE 177
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 533 RDRST L QNTMTK L THQINQMTSS LA IN EKE ISS L KNQIEQ L NRTVKQKQNE I HAKSRLL A 592
Cdd:COG4942 178 ALLAE L EEERAA L EALKAERQKL LA RL EKE LAE L AAELAE L QQEAEELEAL I ARLEAEA A 237
PRK02224
PRK02224 DNA double-strand break repair Rad50 ATPase;
118-599
5.46e-06
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain]
Cd Length: 880
Bit Score: 50.42
E-value: 5.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 118 EA MM E H LRE SLEDAW R NEDATKNREETMQLQ L MS L vr SDQSNMTKGTTDHVPISNKDLQLH R LV L RE RD rla A EL K D hqk 197
Cdd:PRK02224 257 EA EI E D LRE TIAETE R EREELAEEVRDLRER L EE L -- EEERDDLLAEAGLDDADAEAVEAR R EE L ED RD --- E EL R D --- 328
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 198 RL QTN R LYSESVEVMI E VYK E IISK L NA RA KKAELDNFR LE --- HRCNVEQDKYEDRLLH L NK E LVAV vqq N E ELQA A EK 274
Cdd:PRK02224 329 RL EEC R VAAQAHNEEA E SLR E DADD L EE RA EELREEAAE LE sel EEAREAVEDRREEIEE L EE E IEEL --- R E RFGD A PV 405
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 275 D FMELAATN E A L KQRS D R L SRENHT L TKS LR IMEDEKNKLQTS L K ---------------- V SEGLN D AQ R RDK L DL EL A 338
Cdd:PRK02224 406 D LGNAEDFL E E L REER D E L REREAE L EAT LR TARERVEEAEAL L E agkcpecgqpvegsph V ETIEE D RE R VEE L EA EL E 485
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 339 RRSA E RDAKKK ---- A D D SMIL E R R FHL L AKKNTE L ND qv L VNQNELKVQ EK kmlma TAKLN E AIRQKE E IARSRDKL R A 414
Cdd:PRK02224 486 DLEE E VEEVEE rler A E D LVEA E D R IER L EERRED L EE -- L IAERRETIE EK ----- RERAE E LRERAA E LEAEAEEK R E 558
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 415 EISRLNDIVAGV R H E I A SIRHQMQD L LTDLLRANK --- Q L DEKDLQVQK I A -- REKRE QSL ELND AYK kidgie E T LA L K 489
Cdd:PRK02224 559 AAAEAEEEAEEA R E E V A ELNSKLAE L KERIESLER irt L L AAIADAEDE I E rl REKRE ALA ELND ERR ------ E R LA E K 632
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 490 S ER LEV L QV E LQQKQQ E F A NVK K QMEVIQS E K V ml MKTM D MCSRD R ST LQ N tmtklth Q I NQMTSS L aine K E ISS L KNQ 569
Cdd:PRK02224 633 R ER KRE L EA E FDEARI E E A RED K ERAEEYL E Q V -- EEKL D ELREE R DD LQ A ------- E I GAVENE L ---- E E LEE L RER 699
490 500 510
....*....|....*....|....*....|
gi 24650536 570 I E Q L NRT V k QKQNEIHAKSRL L A S TKT DLR 599
Cdd:PRK02224 700 R E A L ENR V - EALEALYDEAEE L E S MYG DLR 728
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
190-520
6.19e-06
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 50.07
E-value: 6.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 190 A E LKDHQK RL QTN R LYS E SVEVM ------ I E V Y KEIIS K LNARAK K AELDNFRLEHR cn V E QD K YEDRLLH L N K E L VAVV 263
Cdd:TIGR02169 194 D E KRQQLE RL RRE R EKA E RYQAL lkekre Y E G Y ELLKE K EALERQ K EAIERQLASLE -- E E LE K LTEEISE L E K R L EEIE 271
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 264 Q QN EEL QAAE KD FM E LAAT ne AL K QRSDR L SR E NHT L TK S LRIM E D E KNKLQTS L K vsegl NDAQRR DKL DL E LARRSA E 343
Cdd:TIGR02169 272 Q LL EEL NKKI KD LG E EEQL -- RV K EKIGE L EA E IAS L ER S IAEK E R E LEDAEER L A ----- KLEAEI DKL LA E IEELER E 344
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 344 RDAKK K AD D SMIL E rrfhl L A KKNT EL N D QV lvnq N EL KVQE K KMLMATAK L NEAIRQK E EIA R SRDK L RA E IS RL NDIV 423
Cdd:TIGR02169 345 IEEER K RR D KLTE E ----- Y A ELKE EL E D LR ---- A EL EEVD K EFAETRDE L KDYREKL E KLK R EINE L KR E LD RL QEEL 415
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 424 AGVRH E I A SIRHQMQDLLTDLLRANKQLDE K D L QVQ K IAREKREQSLE L NDAYKKIDGIE E TL alkserl EVLQV EL QQK 503
Cdd:TIGR02169 416 QRLSE E L A DLNAAIAGIEAKINELEEEKED K A L EIK K QEWKLEQLAAD L SKYEQELYDLK E EY ------- DRVEK EL SKL 488
330
....*....|....*..
gi 24650536 504 Q Q E F A NVKK Q MEVIQSE 520
Cdd:TIGR02169 489 Q R E L A EAEA Q ARASEER 505
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
429-663
3.45e-05
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 47.07
E-value: 3.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 429 EI A SIRHQMQD L LTDLLRAN K Q L DEKDLQVQKIAREKREQSLELNDAYKK I DGI E ET LA LKSER L EV L QV E LQQKQQ E FA 508
Cdd:COG4942 21 AA A EAEAELEQ L QQEIAELE K E L AALKKEEKALLKQLAALERRIAALARR I RAL E QE LA ALEAE L AE L EK E IAELRA E LE 100
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 509 NV K KQME viqsekv M L MKTMDMCS R drstl Q NTMTK L THQ -- INQMTSS L AINEKEISSLKN Q I E Q L nrtv KQKQN E IH A 586
Cdd:COG4942 101 AQ K EELA ------- E L LRALYRLG R ----- Q PPLAL L LSP ed FLDAVRR L QYLKYLAPARRE Q A E E L ---- RADLA E LA A 164
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24650536 587 KSRL L ASTKTD L REMKIR LE QAAHTIDTDEKRFKNM aca L DEVT KE KSLVGLQMVRRND E VRL L REKLDMMQKAIDR 663
Cdd:COG4942 165 LRAE L EAERAE L EALLAE LE EERAALEALKAERQKL --- L ARLE KE LAELAAELAELQQ E AEE L EALIARLEAEAAA 238
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
264-473
7.43e-05
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 45.91
E-value: 7.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 264 QQNE EL Q A AE K DFME L AATNE AL KQ R SDR L S R ENHT L TKS L RIM E D E KNK L QTSLKVSEGLND AQ RRD - KLD L ELAR R SA 342
Cdd:COG4942 38 ELEK EL A A LK K EEKA L LKQLA AL ER R IAA L A R RIRA L EQE L AAL E A E LAE L EKEIAELRAELE AQ KEE l AEL L RALY R LG 117
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 343 ERDAKK --- KAD D SMILE RR FHL L AKKNTELND Q VLVNQNE L KVQEKKMLMAT A KLN E AIRQKE E IARS R DK L R A EISRL 419
Cdd:COG4942 118 RQPPLA lll SPE D FLDAV RR LQY L KYLAPARRE Q AEELRAD L AELAALRAELE A ERA E LEALLA E LEEE R AA L E A LKAER 197
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 24650536 420 NDIV A GVRH E I A SIRHQMQD L LTDLLRANKQLDEKDLQVQKI A REKREQSLELN 473
Cdd:COG4942 198 QKLL A RLEK E L A ELAAELAE L QQEAEELEALIARLEAEAAAA A ERTPAAGFAAL 251
46
PHA02562 endonuclease subunit; Provisional
363-634
2.27e-04
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain]
Cd Length: 562
Bit Score: 44.62
E-value: 2.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 363 L AKKNTELN D QVLVNQNELKVQEK K MLMATAKLNE air QKEE I ARS R D K LRAE I S R LNDIVAGVRH E IAS I RHQMQD L LT 442
Cdd:PHA02562 165 L SEMDKLNK D KIRELNQQIQTLDM K IDHIQQQIKT --- YNKN I EEQ R K K NGEN I A R KQNKYDELVE E AKT I KAEIEE L TD 241
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 443 D LL RANKQLDEKDLQVQ K iarekreqsle LN D A YK KI dgieetlalkserlevlqvelqqkqqefanv K KQM E VI Q SEKV 522
Cdd:PHA02562 242 E LL NLVMDIEDPSAALN K ----------- LN T A AA KI ------------------------------- K SKI E QF Q KVIK 279
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 523 M LM K -- TMDM C SRDR S TLQNTM TK LTHQINQMTS SL - AINEK -- E ISSLKNQIEQLNRTVKQKQ N E I HAKSRL L ASTKTD 597
Cdd:PHA02562 280 M YE K gg VCPT C TQQI S EGPDRI TK IKDKLKELQH SL e KLDTA id E LEEIMDEFNEQSKKLLELK N K I STNKQS L ITLVDK 359
250 260 270
....*....|....*....|....*....|....*....
gi 24650536 598 LREM K IRL E -- QA AHTIDTD E kr FKNMACA LD EVT K E KS 634
Cdd:PHA02562 360 AKKV K AAI E el QA EFVDNAE E -- LAKLQDE LD KIV K T KS 396
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
423-689
2.61e-04
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 45.06
E-value: 2.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 423 VAGV R HEIASIRHQMQD L LTD L L R ANKQ LDE KDLQVQKIA R EKR E QSL E LND aykkidg I E ETLALKS ERLE V L QVE L QQ 502
Cdd:TIGR02169 676 LQRL R ERLEGLKRELSS L QSE L R R IENR LDE LSQELSDAS R KIG E IEK E IEQ ------- L E QEEEKLK ERLE E L EED L SS 748
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 503 KQ QE FA NVK KQMEVIQSEKVM L MKTM dmc SRDRST L QNTMTK L T H Q - I NQMTSS L AIN E K E I S SLKNQIEQLNRTVKQKQ 581
Cdd:TIGR02169 749 LE QE IE NVK SELKELEARIEE L EEDL --- HKLEEA L NDLEAR L S H S r I PEIQAE L SKL E E E V S RIEARLREIEQKLNRLT 825
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 582 N E IHAKSRLLASTKTDLREM K IRLEQAAHT I DTDEKRFKNMACA L D E VTK ----- E KS L VG L QMV R RN devrl L REK L DM 656
Cdd:TIGR02169 826 L E KEYLEKEIQELQEQRIDL K EQIKSIEKE I ENLNGKKEELEEE L E E LEA alrdl E SR L GD L KKE R DE ----- L EAQ L RE 900
250 260 270
....*....|....*....|....*....|....*
gi 24650536 657 MQKA I DRGTM Q YNQRVEDIRL L -- KLE VVNLRT S H 689
Cdd:TIGR02169 901 LERK I EELEA Q IEKKRKRLSE L ka KLE ALEEEL S E 935
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
89-663
3.58e-04
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 44.54
E-value: 3.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 89 E VEQGRAMHEKVRTADEKLQ LA LRTTAIS E AMM E HLRES LE DAWRNEDATKNRE E TMQ L QLMSLVRSDQ snmtkgttdhv 168
Cdd:COG1196 242 E ELEAELEELEAELEELEAE LA ELEAELE E LRL E LEELE LE LEEAQAEEYELLA E LAR L EQDIARLEER ----------- 310
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 169 p ISNKDLQ L HR L v LR E RDR L AA EL KDHQKR L QTNR lys E SV E VMI E VYK E IISK L NARAKKAELDNFR L EHR cnveqdky 248
Cdd:COG1196 311 - RRELEER L EE L - EE E LAE L EE EL EELEEE L EELE --- E EL E EAE E ELE E AEAE L AEAEEALLEAEAE L AEA -------- 377
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 249 E DR L LH L NK EL VAVVQQNE EL Q A AEK dfm EL AATN EAL KQ R SD RL SR E NHT L TKS L R im E D E KNKLQTSLKVS E GLNDAQ 328
Cdd:COG1196 378 E EE L EE L AE EL LEALRAAA EL A A QLE --- EL EEAE EAL LE R LE RL EE E LEE L EEA L A -- E L E EEEEEEEEALE E AAEEEA 452
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 329 RRDKLDLE L ARRS AE RDAKKKADDSMIL E RRFH L LAKKNTE L NDQVLVNQN E LKVQEK K MLMAT A K L NEAIRQKEEIARS 408
Cdd:COG1196 453 ELEEEEEA L LELL AE LLEEAALLEAALA E LLEE L AEAAARL L LLLEAEADY E GFLEGV K AALLL A G L RGLAGAVAVLIGV 532
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 409 RDKLR A EI - SR L NDIVAGVRH E IASIRHQMQDL L TDLLRANKQLDEK D LQVQKI A REKREQSLELND A YKKIDGIEETLA 487
Cdd:COG1196 533 EAAYE A AL e AA L AAALQNIVV E DDEVAAAAIEY L KAAKAGRATFLPL D KIRARA A LAAALARGAIGA A VDLVASDLREAD 612
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 488 LKSER L EVLQVELQQKQQEFANVKKQMEVIQSEKVMLMKTMDMC S RDR S TLQ ntmtklt HQINQMTSS L AIN E K E ISS L K 567
Cdd:COG1196 613 ARYYV L GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGG S AGG S LTG ------- GSRRELLAA L LEA E A E LEE L A 685
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 568 NQIEQLNRTVKQKQNEIHAKS R L LA STKTDLR E MKIRL E QAAHTIDTDEKRFKNMACALD E VTK E ksl VG L QMVRRNDEV 647
Cdd:COG1196 686 ERLAEEELELEEALLAEEEEE R E LA EAEEERL E EELEE E ALEEQLEAEREELLEELLEEE E LLE E --- EA L EELPEPPDL 762
570
....*....|....*.
gi 24650536 648 RL L REK L DMMQKA I DR 663
Cdd:COG1196 763 EE L ERE L ERLERE I EA 778
Mplasa_alph_rch
TIGR04523 helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
365-584
5.21e-04
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain]
Cd Length: 745
Bit Score: 43.86
E-value: 5.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 365 K K NTE LN DQVLVNQN E L K VQEKKMLMATAK LN EAIR QK E E IARSR DK LRA EI SRLNDIVAGVRHEIASIRH Q MQD L LTD L 444
Cdd:TIGR04523 96 D K INK LN SDLSKINS E I K NDKEQKNKLEVE LN KLEK QK K E NKKNI DK FLT EI KKKEKELEKLNNKYNDLKK Q KEE L ENE L 175
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 445 LRAN K QLDEKDLQVQ KI AREKREQS L E L NDAY KKI DGIE ---- ETLA LK SER ------ L E VL Q V E LQQ K QQ E FA N VKK Q M 514
Cdd:TIGR04523 176 NLLE K EKLNIQKNID KI KNKLLKLE L L L SNLK KKI QKNK sles QISE LK KQN nqlkdn I E KK Q Q E INE K TT E IS N TQT Q L 255
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24650536 515 EVIQS E KVMLM K TMDMCSRDRSTLQNTMTK L TH Q I NQ MT S SLAI -- N E KE --- ISS LK NQIEQLNRTVKQK QN E I 584
Cdd:TIGR04523 256 NQLKD E QNKIK K QLSEKQKELEQNNKKIKE L EK Q L NQ LK S EISD ln N Q KE qdw NKE LK SELKNQEKKLEEI QN Q I 330
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
532-729
5.79e-04
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 43.21
E-value: 5.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 532 SRDRSTLQNTMTK L THQ I NQMTSS LA INE KE ISS L KN Q IEQ L N R TVKQKQNE I H A KSRL LA STKTD L R E MKIRLEQAAHT 611
Cdd:COG4942 19 ADAAAEAEAELEQ L QQE I AELEKE LA ALK KE EKA L LK Q LAA L E R RIAALARR I R A LEQE LA ALEAE L A E LEKEIAELRAE 98
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 612 IDTDEKRFKNM acaldevtkeks L VG L QMVR R NDEVR LL REKL D MMQKAIDRGTMQ Y -- NQ R V E DIRL L KLEVVN L RTSH 689
Cdd:COG4942 99 LEAQKEELAEL ------------ L RA L YRLG R QPPLA LL LSPE D FLDAVRRLQYLK Y la PA R R E QAEE L RADLAE L AALR 166
170 180 190 200
....*....|....*....|....*....|....*....|
gi 24650536 690 ECMQR E VGNKA A MRHDVIRLERQ L NQERLKVSAYSEE L SR 729
Cdd:COG4942 167 AELEA E RAELE A LLAELEEERAA L EALKAERQKLLAR L EK 206
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
500-791
6.43e-04
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 43.51
E-value: 6.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 500 LQQKQQ E FANVKKQM E VIQSEKVM L M K TMDMCSRDRST L QNTMTK L ------- TH QI NQMTSS LA IN E K E ISS L KNQ I E Q 572
Cdd:TIGR02168 672 ILERRR E IEELEEKI E ELEEKIAE L E K ALAELRKELEE L EEELEQ L rkeleel SR QI SALRKD LA RL E A E VEQ L EER I A Q 751
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 573 L NRTVKQKQN EI HAKSRL L ASTKTD L R E MKIRL E QAAHT I DTDEKRF K NMAC ALDE VTK E KS L V glqmvrr N D E VRL LRE 652
Cdd:TIGR02168 752 L SKELTELEA EI EELEER L EEAEEE L A E AEAEI E ELEAQ I EQLKEEL K ALRE ALDE LRA E LT L L ------- N E E AAN LRE 824
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 653 K L DMMQKA I DRGTMQYNQRV E D I RL L KLEVVN L RTSH E CMQRE vgn KAAMRHDVIR L ERQLNQERLKVSAYSE EL S rpcr 732
Cdd:TIGR02168 825 R L ESLERR I AATERRLEDLE E Q I EE L SEDIES L AAEI E ELEEL --- IEELESELEA L LNERASLEEALALLRS EL E ---- 897
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 24650536 733 ihrwrvllgkdprrf EL IRKIQQ L LKRNIR L SV E R E NKAKE LA E LE HVH E EFKRQMT NL 791
Cdd:TIGR02168 898 --------------- EL SEELRE L ESKRSE L RR E L E ELREK LA Q LE LRL E GLEVRID NL 941
CwlO1
COG3883 Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
429-628
8.82e-04
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain]
Cd Length: 379
Bit Score: 42.51
E-value: 8.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 429 E I ASIRHQMQD L LTD L LR A NKQ LD EKDLQVQKIAR ekreqsl E L N DAYKKIDGIEETLALKSERLEVLQV E LQQKQQ E FA 508
Cdd:COG3883 17 Q I QAKQKELSE L QAE L EA A QAE LD ALQAELEELNE ------- E Y N ELQAELEALQAEIDKLQAEIAEAEA E IEERRE E LG 89
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 509 NVKKQMEVIQSEKVM L MKTMD mc S RDR S TLQNTMTK L THQINQMTSS L aine K E ISSL K NQI E QLNRTVKQ K QN E IH A KS 588
Cdd:COG3883 90 ERARALYRSGGSVSY L DVLLG -- S ESF S DFLDRLSA L SKIADADADL L ---- E E LKAD K AEL E AKKAELEA K LA E LE A LK 163
170 180 190 200
....*....|....*....|....*....|....*....|
gi 24650536 589 RL L AST K TD L REMKIRL E QAAHTIDTD E KRFKNMACA L DE 628
Cdd:COG3883 164 AE L EAA K AE L EAQQAEQ E ALLAQLSAE E AAAEAQLAE L EA 203
COG4372
COG4372 Uncharacterized protein, contains DUF3084 domain [Function unknown];
400-718
1.05e-03
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain]
Cd Length: 370
Bit Score: 42.20
E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 400 R QK E EIARS R DK L RAEISRLNDIV A GVRHEIASIRHQMQD L LTD L LRANKQ L DEKDLQVQKIAR E KREQSL EL NDAYKKI 479
Cdd:COG4372 3 R LG E KVGKA R LS L FGLRPKTGILI A ALSEQLRKALFELDK L QEE L EQLREE L EQAREELEQLEE E LEQARS EL EQLEEEL 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 480 DGIE E T L ALKSER L EVL Q V EL QQK Q Q E FANVKKQM E VI Q S E KVM L MKTMDMCSRDRST LQ NTMTKLTHQINQMTSS L AIN 559
Cdd:COG4372 83 EELN E Q L QAAQAE L AQA Q E EL ESL Q E E AEELQEEL E EL Q K E RQD L EQQRKQLEAQIAE LQ SEIAEREEELKELEEQ L ESL 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 560 EK E ISS L KNQIEQ L NRTVKQKQNEIHA K SRLLAST K TDLREMKIR L EQAAHTIDTD E KRFKNMACALDEVTKEKS L VGLQ 639
Cdd:COG4372 163 QE E LAA L EQELQA L SEAEAEQALDELL K EANRNAE K EEELAEAEK L IESLPRELAE E LLEAKDSLEAKLGLALSA L LDAL 242
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24650536 640 MVRRND E VR L LREK L DMMQKAIDRGTMQYNQRV E DIRLLK LE VVN L RTSHECMQREVGNKAAMRHDV I RLERQLNQER L 718
Cdd:COG4372 243 ELEEDK E EL L EEVI L KEIEELELAILVEKDTEE E ELEIAA LE LEA L EEAALELKLLALLLNLAALSL I GALEDALLAA L 321
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
453-788
1.99e-03
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 41.97
E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 453 E KD L QVQKIAR EK R E QSL EL NDAYKKID gieet LAL KSE RLE V L QV EL QQK Q Q E FANVKKQM E VIQS E kvmlmktmdmcs 532
Cdd:TIGR02168 199 E RQ L KSLERQA EK A E RYK EL KAELRELE ----- LAL LVL RLE E L RE EL EEL Q E E LKEAEEEL E ELTA E ------------ 261
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 533 rdrstlqntmtklthq INQMTSS L AINEK E I S S L KNQ IE Q L NRTVKQKQ NEI HAKSRLLASTKTD L REMKIR LE QAAHTI 612
Cdd:TIGR02168 262 ---------------- LQELEEK L EELRL E V S E L EEE IE E L QKELYALA NEI SRLEQQKQILRER L ANLERQ LE ELEAQL 325
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 613 DTD E KRFKNM A CA L D E VTKEKSLVGLQMVRRND E VRL L REK L DMMQKAIDRGTM Q YNQRVEDIRL L K L EV vnlrtshecm 692
Cdd:TIGR02168 326 EEL E SKLDEL A EE L A E LEEKLEELKEELESLEA E LEE L EAE L EELESRLEELEE Q LETLRSKVAQ L E L QI ---------- 395
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 693 qrevgnk A AMRHDVI RLE RQ L NQERLKVSAYSE E LSRPCRIHRWRV L LGKDPRRF EL IRKIQQ L LKRNI RL SVER E NKAK 772
Cdd:TIGR02168 396 ------- A SLNNEIE RLE AR L ERLEDRRERLQQ E IEELLKKLEEAE L KELQAELE EL EEELEE L QEELE RL EEAL E ELRE 468
330
....*....|....*.
gi 24650536 773 EL A E L E HVHEEFK R QM 788
Cdd:TIGR02168 469 EL E E A E QALDAAE R EL 484
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
259-487
2.67e-03
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 40.90
E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 259 LV A VVQ Q NEELQA AE K dfm EL AATNE --- A L KQRSDR L SR E NHT L T K S L RIM E DEKNK L QTSLKVS E G - L NDAQRR - DK L 333
Cdd:COG4942 12 AL A AAA Q ADAAAE AE A --- EL EQLQQ eia E L EKELAA L KK E EKA L L K Q L AAL E RRIAA L ARRIRAL E Q e L AALEAE l AE L 88
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 334 DL E L A RRS AE RD A K K KA ddsmi L ERRFHL L AKKNTELNDQV L VNQNELK v QEKKM L MATAK L NE A I R QKE E iarsrd K LR 413
Cdd:COG4942 89 EK E I A ELR AE LE A Q K EE ----- L AELLRA L YRLGRQPPLAL L LSPEDFL - DAVRR L QYLKY L AP A R R EQA E ------ E LR 156
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24650536 414 A EISR L NDIV A GVRH E I A SIRHQMQD L LTDLLRANKQLD E KDLQVQKIAR E KR E QSL EL NDAYKKIDGI E ETL A 487
Cdd:COG4942 157 A DLAE L AALR A ELEA E R A ELEALLAE L EEERAALEALKA E RQKLLARLEK E LA E LAA EL AELQQEAEEL E ALI A 230
COG4913
COG4913 Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
359-613
3.31e-03
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain]
Cd Length: 1089
Bit Score: 41.44
E-value: 3.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 359 R FHL L AKKN T ELNDQV LV NQ - NE L KVQEKKMLM A TAKL n E AIRQKE E I A RSRDKL R AEISR L NDIV A GV R HEI A si RHQM 437
Cdd:COG4913 214 R EYM L EEPD T FEAADA LV EH f DD L ERAHEALED A REQI - E LLEPIR E L A ERYAAA R ERLAE L EYLR A AL R LWF A -- QRRL 290
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 438 QD L LTD L LRANKQ L DEKDLQVQKIAREKREQSL EL NDAYKK I D G I eetlal KSE RLE V L QV E LQQKQQ E FANVK kqmevi 517
Cdd:COG4913 291 EL L EAE L EELRAE L ARLEAELERLEARLDALRE EL DELEAQ I R G N ------ GGD RLE Q L ER E IERLER E LEERE ------ 358
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 518 qsekvmlmktmdmcs R D R ST L QNTMTK L THQINQMTSSL A INEK E ISS L KNQI E QLNRTVKQKQN E IH A KS R L L ASTKTD 597
Cdd:COG4913 359 --------------- R R R AR L EALLAA L GLPLPASAEEF A ALRA E AAA L LEAL E EELEALEEALA E AE A AL R D L RRELRE 423
250
....*....|....*.
gi 24650536 598 L REMKIR LE QAAHT I D 613
Cdd:COG4913 424 L EAEIAS LE RRKSN I P 439
DR0291
COG1579 Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
450-607
3.54e-03
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain]
Cd Length: 236
Bit Score: 39.91
E-value: 3.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650536 450 Q L D E K D LQVQKIAREKR E QSL EL NDAYKKIDGI E ET L ALKSER LE V L QV E LQQKQQ E FAN V KKQMEVIQ s E KVMLMKT md 529
Cdd:COG1579 11 D L Q E L D SELDRLEHRLK E LPA EL AELEDELAAL E AR L EAAKTE LE D L EK E IKRLEL E IEE V EARIKKYE - E QLGNVRN -- 87
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24650536 530 mc SRD rstlqnt MTK L THQ I NQMTSSLAIN E K EI SS L KNQ IE Q L NRTVKQKQN E IHAKSRL L AST K TD L R E MKIR LE Q 607
Cdd:COG1579 88 -- NKE ------- YEA L QKE I ESLKRRISDL E D EI LE L MER IE E L EEELAELEA E LAELEAE L EEK K AE L D E ELAE LE A 156
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
