|
Name |
Accession |
Description |
Interval |
E-value |
| DnaJ_bact |
TIGR02349 |
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ... |
396-495 |
4.93e-23 |
|
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Pssm-ID: 274090 [Multi-domain] Cd Length: 354 Bit Score: 100.37 E-value: 4.93e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 396 DYYKILGVSRSANKQEIIKAYRKLAQQWHPD-NfqseaDKKEAEKKFIDIASAKEVLTDPEMRQKFDS-GEDplDPENQQ 473
Cdd:TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDrN-----KDKEAEEKFKEINEAYEVLSDPEKRAQYDQfGHA--GFNGGG 73
|
90 100
....*....|....*....|..
gi 2553878293 474 GGGGggprewpFGFNPFEGGNF 495
Cdd:TIGR02349 74 GGGG-------GGFNGFDIGFF 88
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
46-284 |
1.70e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 97.11 E-value: 1.70e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 46 LEMGRKLLAAGQLAEALSHYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAIQLKPDFLAARLQRGNILLKQGS 125
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 126 TQEAREDFQAVLNHSPDHEEAHDQLLK--------------ADKLESLQEE--------AHEAHRRGDCRIAVQVLEHVI 183
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEiyeqegdwekaievLERLLKLGPEnahaycelAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 184 ELSPWDPESRELRAECYIQLGEPRKAIMDLTPASRLRADNRAAFLKLSQLHYSLGEHHDSLNQVRECLKLDQDDKECFAL 263
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL 251
|
250 260
....*....|....*....|.
gi 2553878293 264 YKQVKKLsKQLDSAEELISEQ 284
Cdd:COG2956 252 ADLLERK-EGLEAALALLERQ 271
|
|
| DnaJ |
pfam00226 |
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ... |
396-461 |
8.10e-22 |
|
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.
Pssm-ID: 395170 [Multi-domain] Cd Length: 63 Bit Score: 88.68 E-value: 8.10e-22
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2553878293 396 DYYKILGVSRSANKQEIIKAYRKLAQQWHPDnfqSEADKKEAEKKFIDIASAKEVLTDPEMRQKFD 461
Cdd:pfam00226 1 DYYEILGVSPDASDEEIKKAYRKLALKYHPD---KNPGDPEAEEKFKEINEAYEVLSDPEKRAIYD 63
|
|
| PRK14277 |
PRK14277 |
chaperone protein DnaJ; Provisional |
394-499 |
2.17e-21 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 184599 [Multi-domain] Cd Length: 386 Bit Score: 96.02 E-value: 2.17e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 394 KRDYYKILGVSRSANKQEIIKAYRKLAQQWHPDnfqSEADKKEAEKKFIDIASAKEVLTDPEMRQKFDS-GEDPLDPENQ 472
Cdd:PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPD---LNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQfGHAAFDPGGF 80
|
90 100
....*....|....*....|....*..
gi 2553878293 473 QGGGgggprewpFGFNPFEGGNFHFKF 499
Cdd:PRK14277 81 GQGG--------FGQGGFGGGGFDFDF 99
|
|
| PRK10767 |
PRK10767 |
chaperone protein DnaJ; Provisional |
394-461 |
6.00e-21 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 236757 [Multi-domain] Cd Length: 371 Bit Score: 94.44 E-value: 6.00e-21
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2553878293 394 KRDYYKILGVSRSANKQEIIKAYRKLAQQWHPD-NfqseADKKEAEKKFIDIASAKEVLTDPEMRQKFD 461
Cdd:PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDrN----PGDKEAEEKFKEIKEAYEVLSDPQKRAAYD 67
|
|
| PRK14278 |
PRK14278 |
chaperone protein DnaJ; Provisional |
395-469 |
6.26e-21 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237654 [Multi-domain] Cd Length: 378 Bit Score: 94.35 E-value: 6.26e-21
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2553878293 395 RDYYKILGVSRSANKQEIIKAYRKLAQQWHPDNFQSEadkkEAEKKFIDIASAKEVLTDPEMRQKFDSGEDPLDP 469
Cdd:PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDE----EAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLES 73
|
|
| PRK14280 |
PRK14280 |
molecular chaperone DnaJ; |
394-501 |
1.12e-20 |
|
molecular chaperone DnaJ;
Pssm-ID: 237656 [Multi-domain] Cd Length: 376 Bit Score: 93.63 E-value: 1.12e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 394 KRDYYKILGVSRSANKQEIIKAYRKLAQQWHPDnFQSEADkkeAEKKFIDIASAKEVLTDPEMRQKFDS-GEDplDPeNQ 472
Cdd:PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPD-INKEEG---ADEKFKEISEAYEVLSDDQKRAQYDQfGHA--GP-NQ 75
|
90 100
....*....|....*....|....*....
gi 2553878293 473 QggggggprewpFGFNPFEGGNFHFKFNF 501
Cdd:PRK14280 76 G-----------FGGGGFGGGDFGGGFGF 93
|
|
| PRK14282 |
PRK14282 |
chaperone protein DnaJ; Provisional |
394-466 |
2.79e-20 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 184603 [Multi-domain] Cd Length: 369 Bit Score: 92.55 E-value: 2.79e-20
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2553878293 394 KRDYYKILGVSRSANKQEIIKAYRKLAQQWHPDnfQSEADKKEAEKKFIDIASAKEVLTDPEMRQKFDS----GEDP 466
Cdd:PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPD--RHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRfgyvGEQP 77
|
|
| terminal_TopJ |
NF037946 |
terminal organelle assembly protein TopJ; |
392-491 |
3.32e-20 |
|
terminal organelle assembly protein TopJ;
Pssm-ID: 468284 [Multi-domain] Cd Length: 440 Bit Score: 92.96 E-value: 3.32e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 392 SRKRDYYKILGVSRSANKQEIIKAYRKLAQQWHPDNfQSEADkkeAEKKFIDIASAKEVLTDPEMRQKFDS-GEDPLDpe 470
Cdd:NF037946 2 EEKRDYYEVLGVDRDADDQEIKKAFRKLAKKYHPDR-NKAPD---AAEIFAEINEAYEVLSNPEKRANYDKyGHDGVD-- 75
|
90 100
....*....|....*....|.
gi 2553878293 471 nqqggggggpREWPFGFNPFE 491
Cdd:NF037946 76 ----------GEGGFGFDAFD 86
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
39-294 |
1.41e-19 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 88.14 E-value: 1.41e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 39 PVEIEHHLEMGRKLLAAGQLAEALSHYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAIQLKPDFLAARLQRGN 118
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 119 ILLKQGSTQEAREDFQAVLNHSPDHEEAHDQLlkadkleslqeeAHEAHRRGDCRIAVQVLEHVIELSPWDPESRELRAE 198
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEALYNL------------GLALLELGRYDEAIEAYERALELDPDDADALYNLGI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 199 CYIQLGEPRKAIMDLtpaSRLRADNRAAFLKLSQLHYSLGEHHDSLNQVRECLKLDQDDKECFALYKQVKKLSKQLDSAE 278
Cdd:COG0457 153 ALEKLGRYEEALELL---EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALAL 229
|
250
....*....|....*.
gi 2553878293 279 ELISEQRFQEAIEKYE 294
Cdd:COG0457 230 LLALRLAALALYQYRA 245
|
|
| PRK14281 |
PRK14281 |
chaperone protein DnaJ; Provisional |
394-461 |
1.77e-19 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237657 [Multi-domain] Cd Length: 397 Bit Score: 90.25 E-value: 1.77e-19
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2553878293 394 KRDYYKILGVSRSANKQEIIKAYRKLAQQWHPDNfqsEADKKEAEKKFIDIASAKEVLTDPEMRQKFD 461
Cdd:PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDK---NPDNKEAEEHFKEVNEAYEVLSNDDKRRRYD 66
|
|
| DnaJ |
COG0484 |
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ... |
396-484 |
1.96e-19 |
|
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440252 [Multi-domain] Cd Length: 139 Bit Score: 84.75 E-value: 1.96e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 396 DYYKILGVSRSANKQEIIKAYRKLAQQWHPDNFQSEadkKEAEKKFIDIASAKEVLTDPEMRQKFD-SGEDPLDPENQQG 474
Cdd:COG0484 1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGD---PEAEEKFKEINEAYEVLSDPEKRAAYDrFGHAAELLLATEL 77
|
90
....*....|
gi 2553878293 475 GGGGGPREWP 484
Cdd:COG0484 78 AESAAAEAAA 87
|
|
| PRK14293 |
PRK14293 |
molecular chaperone DnaJ; |
395-464 |
3.42e-19 |
|
molecular chaperone DnaJ;
Pssm-ID: 237663 [Multi-domain] Cd Length: 374 Bit Score: 89.28 E-value: 3.42e-19
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2553878293 395 RDYYKILGVSRSANKQEIIKAYRKLAQQWHPD-NfqseadkKE--AEKKFIDIASAKEVLTDPEMRQKFDS-GE 464
Cdd:PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDvN-------KEpgAEDRFKEINRAYEVLSDPETRARYDQfGE 69
|
|
| DnaJ |
smart00271 |
DnaJ molecular chaperone homology domain; |
395-455 |
3.64e-19 |
|
DnaJ molecular chaperone homology domain;
Pssm-ID: 197617 [Multi-domain] Cd Length: 60 Bit Score: 81.13 E-value: 3.64e-19
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2553878293 395 RDYYKILGVSRSANKQEIIKAYRKLAQQWHPDNFQSeaDKKEAEKKFIDIASAKEVLTDPE 455
Cdd:smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPG--DKEEAEEKFKEINEAYEVLSDPE 59
|
|
| PRK14291 |
PRK14291 |
chaperone protein DnaJ; Provisional |
394-494 |
4.60e-19 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237661 [Multi-domain] Cd Length: 382 Bit Score: 89.06 E-value: 4.60e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 394 KRDYYKILGVSRSANKQEIIKAYRKLAQQWHPDnFQSEadkKEAEKKFIDIASAKEVLTDPEMRQKFDS-GEDPLDPENQ 472
Cdd:PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPD-FNKN---PEAEEKFKEINEAYQVLSDPEKRKLYDQfGHAAFSGSGQ 77
|
90 100
....*....|....*....|..
gi 2553878293 473 QGGGGGgprewpfGFNPFEGGN 494
Cdd:PRK14291 78 QQQGQE-------GFSDFGGGN 92
|
|
| PRK14294 |
PRK14294 |
chaperone protein DnaJ; Provisional |
392-461 |
2.17e-18 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237664 [Multi-domain] Cd Length: 366 Bit Score: 86.74 E-value: 2.17e-18
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 392 SRKRDYYKILGVSRSANKQEIIKAYRKLAQQWHPDnfQSEADkKEAEKKFIDIASAKEVLTDPEMRQKFD 461
Cdd:PRK14294 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPD--RNPGD-KEAEELFKEAAEAYEVLSDPKKRGIYD 67
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
49-234 |
3.77e-18 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 87.74 E-value: 3.77e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 49 GRKLLAAGQLAEALSHYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAIQLKPDFLAARLQRGNILLKQGSTQE 128
Cdd:COG3914 85 ALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEE 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 129 AREDFQAVLNHSPDHEEAHDQLlkADKLESLQ--EEAHEAHRR------GDCRIAVQVLEHVIELSPWDPESRELRAECY 200
Cdd:COG3914 165 AIAALRRALELDPDNAEALNNL--GNALQDLGrlEEAIAAYRRaleldpDNADAHSNLLFALRQACDWEVYDRFEELLAA 242
|
170 180 190
....*....|....*....|....*....|....*
gi 2553878293 201 IQLGEPRKAIMDLTPASRL-RADNRAAFLKLSQLH 234
Cdd:COG3914 243 LARGPSELSPFALLYLPDDdPAELLALARAWAQLV 277
|
|
| PRK14283 |
PRK14283 |
chaperone protein DnaJ; Provisional |
394-461 |
3.82e-18 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 184604 [Multi-domain] Cd Length: 378 Bit Score: 86.03 E-value: 3.82e-18
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2553878293 394 KRDYYKILGVSRSANKQEIIKAYRKLAQQWHPDnfqsEADKKEAEKKFIDIASAKEVLTDPEMRQKFD 461
Cdd:PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPD----VSEEEGAEEKFKEISEAYAVLSDDEKRQRYD 67
|
|
| PRK14301 |
PRK14301 |
chaperone protein DnaJ; Provisional |
394-461 |
4.61e-18 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237668 [Multi-domain] Cd Length: 373 Bit Score: 85.95 E-value: 4.61e-18
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2553878293 394 KRDYYKILGVSRSANKQEIIKAYRKLAQQWHPDNfqsEADKKEAEKKFIDIASAKEVLTDPEMRQKFD 461
Cdd:PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDR---NPDNPEAEQKFKEAAEAYEVLRDAEKRARYD 67
|
|
| PRK14290 |
PRK14290 |
chaperone protein DnaJ; Provisional |
395-461 |
5.52e-18 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 172778 [Multi-domain] Cd Length: 365 Bit Score: 85.37 E-value: 5.52e-18
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2553878293 395 RDYYKILGVSRSANKQEIIKAYRKLAQQWHPDnfQSEADKKEAEKKFIDIASAKEVLTDPEMRQKFD 461
Cdd:PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPD--LHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYD 67
|
|
| PRK14289 |
PRK14289 |
molecular chaperone DnaJ; |
394-461 |
2.16e-17 |
|
molecular chaperone DnaJ;
Pssm-ID: 237660 [Multi-domain] Cd Length: 386 Bit Score: 83.73 E-value: 2.16e-17
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2553878293 394 KRDYYKILGVSRSANKQEIIKAYRKLAQQWHPDnfQSEADkKEAEKKFIDIASAKEVLTDPEMRQKFD 461
Cdd:PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPD--KNPGD-KEAEEKFKEAAEAYDVLSDPDKRSRYD 68
|
|
| PRK14298 |
PRK14298 |
chaperone protein DnaJ; Provisional |
391-461 |
2.41e-17 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 184612 [Multi-domain] Cd Length: 377 Bit Score: 83.74 E-value: 2.41e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2553878293 391 ISRKRDYYKILGVSRSANKQEIIKAYRKLAQQWHPDNfQSEADkkeAEKKFIDIASAKEVLTDPEMRQKFD 461
Cdd:PRK14298 1 MATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDK-NKEPD---AEEKFKEISEAYAVLSDAEKRAQYD 67
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
77-368 |
3.05e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 81.70 E-value: 3.05e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 77 LTYYKRATVFLAMGKSKSALPDLTQAIQLKPDFLAARLQRGNILLKQGSTQEAREDFQAVLNHSPDHEEAHDQLlkadkl 156
Cdd:COG2956 9 LGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLEL------ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 157 eslqeeAHEAHRRGDCRIAVQVLEHVIELSPWDPESRELRAECYIQLGEPRKAIMDLTPASRLRADNRAAFLKLSQLHYS 236
Cdd:COG2956 83 ------AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLE 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 237 LGEHHDSLNQVRECLKLDQDDKECFALYkqvkklskqldsAEELISEQRFQEAIEKYESVMRTEPNVAFYTNKAKErtcf 316
Cdd:COG2956 157 QGDYDEAIEALEKALKLDPDCARALLLL------------AELYLEQGDYEEAIAALERALEQDPDYLPALPRLAE---- 220
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 2553878293 317 CLVKMKSAEEAVDICSEAHQREPQNIHILRdRAEAYILMQEYEKAVEDYQEA 368
Cdd:COG2956 221 LYEKLGDPEEALELLRKALELDPSDDLLLA-LADLLERKEGLEAALALLERQ 271
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
109-390 |
6.06e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 80.93 E-value: 6.06e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 109 FLAARLQRGNILLKQGSTQEAREDFQAVLNHSPDHEEAHDQLlkadkleslqeeAHEAHRRGDCRIAVQVLEHVIELSPW 188
Cdd:COG2956 7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLAL------------GNLYRRRGEYDRAIRIHQKLLERDPD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 189 DPESRELRAECYIQLGEPRKAIMDLTPASRLRADNRAAFLKLSQLHYSLGEHHDSLNQVRECLKLDQDDKECFALYkqvk 268
Cdd:COG2956 75 RAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCEL---- 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 269 klskqldsAEELISEQRFQEAIEKYESVMRTEPN-VAFYTNKAKertcfCLVKMKSAEEAVDICSEAHQREPQNIHILRD 347
Cdd:COG2956 151 --------AELYLEQGDYDEAIEALEKALKLDPDcARALLLLAE-----LYLEQGDYEEAIAALERALEQDPDYLPALPR 217
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 2553878293 348 RAEAYILMQEYEKAVEDYQEAREFDQENQEL---------REGLDRAHKLLK 390
Cdd:COG2956 218 LAELYEKLGDPEEALELLRKALELDPSDDLLlaladllerKEGLEAALALLE 269
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
31-430 |
7.75e-17 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 83.59 E-value: 7.75e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 31 LDGVLGATPVEIEHHLEMGRKLLAAGQLAEALSHYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAIQLKPDFL 110
Cdd:TIGR02917 182 IDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSP 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 111 AARLQRGNILLKQGSTQEAREDFQAVLNHSP-----------------DHEEAHDQLlkaDKLESLQEEAHEAHR----- 168
Cdd:TIGR02917 262 LAHYLKALVDFQKKNYEDARETLQDALKSAPeylpalllagaseyqlgNLEQAYQYL---NQILKYAPNSHQARRllasi 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 169 ---RGDCRIAVQVLEHVIELSPWDPESRELRAECYIQLGEPRKAIMDLTPASRLRADNRAAFLKLSQLHYSLGEHHDSLN 245
Cdd:TIGR02917 339 qlrLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIA 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 246 QVRECLKLDQDDKEC-FAL---YKQVKKLSKQLDSAEELISEQ------------------RFQEAIEKYESVMRTEPNV 303
Cdd:TIGR02917 419 DLETAAQLDPELGRAdLLLilsYLRSGQFDKALAAAKKLEKKQpdnaslhnllgaiylgkgDLAKAREAFEKALSIEPDF 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 304 AFYTnkakertcFCLVKM----KSAEEAVDICSEAHQREPQNIHILRDRAEAYILMQEYEKAVEDYQEAREFDQENQELR 379
Cdd:TIGR02917 499 FPAA--------ANLARIdiqeGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPA 570
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2553878293 380 EGLDRAHKLLK---------------ISRKRDYYKILGVSRSANK--QEIIKAYRKLAQQwHPDNFQS 430
Cdd:TIGR02917 571 LALAQYYLGKGqlkkalailneaadaAPDSPEAWLMLGRAQLAAGdlNKAVSSFKKLLAL-QPDSALA 637
|
|
| PRK14295 |
PRK14295 |
molecular chaperone DnaJ; |
394-461 |
9.18e-17 |
|
molecular chaperone DnaJ;
Pssm-ID: 237665 [Multi-domain] Cd Length: 389 Bit Score: 82.20 E-value: 9.18e-17
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2553878293 394 KRDYYKILGVSRSANKQEIIKAYRKLAQQWHPDnfqSEADKKEAEKKFIDIASAKEVLTDPEMRQKFD 461
Cdd:PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPD---ANKGDAKAEERFKEISEAYDVLSDEKKRKEYD 72
|
|
| DnaJ |
cd06257 |
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ... |
396-453 |
1.12e-16 |
|
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Pssm-ID: 99751 [Multi-domain] Cd Length: 55 Bit Score: 73.73 E-value: 1.12e-16
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 2553878293 396 DYYKILGVSRSANKQEIIKAYRKLAQQWHPDNFQseaDKKEAEKKFIDIASAKEVLTD 453
Cdd:cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNP---DDPEAEEKFKEINEAYEVLSD 55
|
|
| PRK14299 |
PRK14299 |
chaperone protein DnaJ; Provisional |
394-494 |
1.31e-16 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237667 [Multi-domain] Cd Length: 291 Bit Score: 80.37 E-value: 1.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 394 KRDYYKILGVSRSANKQEIIKAYRKLAQQWHPDNFQSeadkKEAEKKFIDIASAKEVLTDPEMRQKFDS-GEDPLDPENQ 472
Cdd:PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS----PGAEEKFKEINEAYTVLSDPEKRRIYDTyGTTAASAGWQ 78
|
90 100
....*....|....*....|..
gi 2553878293 473 qgggggGPREWPFGFNPFEGGN 494
Cdd:PRK14299 79 ------GPPPGPPGGGDFSGFN 94
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
45-254 |
1.47e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 79.77 E-value: 1.47e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 45 HLEMGRKLLAAGQLAEALSHYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAIQLKPDFLAARLQRGNILLKQG 124
Cdd:COG2956 79 LLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQG 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 125 STQEAREDFQAVLNHSPDHEEAHDQLlkadkleslqeeAHEAHRRGDCRIAVQVLEHVIELSPWDPESRELRAECYIQLG 204
Cdd:COG2956 159 DYDEAIEALEKALKLDPDCARALLLL------------AELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG 226
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2553878293 205 EPRKAIMDLTPASRLRADNrAAFLKLSQLHYSLGEHHDSLNQVRECLKLD 254
Cdd:COG2956 227 DPEEALELLRKALELDPSD-DLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
69-291 |
1.99e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 78.90 E-value: 1.99e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 69 VEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAIQLKPDFLAARLQRGNILLKQGSTQEAREDFQAVLNHSPDHEEAHD 148
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 149 QLlkadkleslqeeAHEAHRRGDCRIAVQVLEHVIELSPWDPESRELRAECYIQLGEPRKAIMDLTPASRLRADNRAAFL 228
Cdd:COG0457 81 NL------------GLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2553878293 229 KLSQLHYSLGEHHDSLNQVRECLKLDQDDKECFALYKQVKKLSKQLDSAEELISEQRFQEAIE 291
Cdd:COG0457 149 NLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKL 211
|
|
| PRK14297 |
PRK14297 |
molecular chaperone DnaJ; |
394-461 |
2.15e-16 |
|
molecular chaperone DnaJ;
Pssm-ID: 184611 [Multi-domain] Cd Length: 380 Bit Score: 80.98 E-value: 2.15e-16
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2553878293 394 KRDYYKILGVSRSANKQEIIKAYRKLAQQWHPDNFQSEadkKEAEKKFIDIASAKEVLTDPEMRQKFD 461
Cdd:PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN---KEAEEKFKEINEAYQVLSDPQKKAQYD 67
|
|
| SEC63 |
COG5407 |
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ... |
396-459 |
3.55e-16 |
|
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 444165 [Multi-domain] Cd Length: 61 Bit Score: 72.72 E-value: 3.55e-16
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2553878293 396 DYYKILGVSRSANKQEIIKAYRKLAQQWHPDnfqSEADKKEAEKKFIDIASAKEVLTDPEMRQK 459
Cdd:COG5407 1 DPYEVLGVAKTASADEIKKAYRKLAKKYHPD---RNKGDPKAEERFKEINEAYELLSDAEKRAR 61
|
|
| PRK14284 |
PRK14284 |
chaperone protein DnaJ; Provisional |
396-461 |
4.72e-16 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237658 [Multi-domain] Cd Length: 391 Bit Score: 79.89 E-value: 4.72e-16
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2553878293 396 DYYKILGVSRSANKQEIIKAYRKLAQQWHPDNFQSEAdkkEAEKKFIDIASAKEVLTDPEMRQKFD 461
Cdd:PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDA---EAEKRFKEVSEAYEVLSDAQKRESYD 64
|
|
| PRK14300 |
PRK14300 |
chaperone protein DnaJ; Provisional |
395-473 |
6.07e-16 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 172788 [Multi-domain] Cd Length: 372 Bit Score: 79.29 E-value: 6.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 395 RDYYKILGVSRSANKQEIIKAYRKLAQQWHPDNfqseADKKEAEKKFIDIASAKEVLTDPEMRQKFDS-GEDPLdpENQQ 473
Cdd:PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDT----TDAKDAEKKFKEINAAYDVLKDEQKRAAYDRfGHDAF--QNQQ 76
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
35-224 |
8.01e-16 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 80.42 E-value: 8.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 35 LGATPVEIEHHLEMGRKLLAAGQLAEALSHYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAIQLKPDFLAARL 114
Cdd:COG3914 105 LALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 115 QRGNILLKQGSTQEAREDFQAVLNHSPDHEEAHDQLLKAdklesLQEEAHEAHRRGDCRIAVQVLEHVIELSP-----WD 189
Cdd:COG3914 185 NLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFA-----LRQACDWEVYDRFEELLAALARGPSELSPfallyLP 259
|
170 180 190
....*....|....*....|....*....|....*..
gi 2553878293 190 PESRELRAECYIQLGE--PRKAIMDLTPASRLRADNR 224
Cdd:COG3914 260 DDDPAELLALARAWAQlvAAAAAPELPPPPNPRDPDR 296
|
|
| PRK14286 |
PRK14286 |
chaperone protein DnaJ; Provisional |
395-461 |
8.27e-16 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 172774 [Multi-domain] Cd Length: 372 Bit Score: 78.88 E-value: 8.27e-16
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2553878293 395 RDYYKILGVSRSANKQEIIKAYRKLAQQWHPDNFQSEadkKEAEKKFIDIASAKEVLTDPEMRQKFD 461
Cdd:PRK14286 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN---KESEEKFKEATEAYEILRDPKKRQAYD 67
|
|
| PRK14276 |
PRK14276 |
chaperone protein DnaJ; Provisional |
394-461 |
1.24e-15 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237653 [Multi-domain] Cd Length: 380 Bit Score: 78.59 E-value: 1.24e-15
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2553878293 394 KRDYYKILGVSRSANKQEIIKAYRKLAQQWHPDnFQSEADkkeAEKKFIDIASAKEVLTDPEMRQKFD 461
Cdd:PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPD-INKEPG---AEEKYKEVQEAYETLSDPQKRAAYD 66
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
37-147 |
2.58e-15 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 74.95 E-value: 2.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 37 ATPVEIEHHLEMGRKLLAAGQLAEALSHYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAIQLKPDFLAARLQR 116
Cdd:COG4785 68 ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNR 147
|
90 100 110
....*....|....*....|....*....|.
gi 2553878293 117 GNILLKQGSTQEAREDFQAVLNHSPDHEEAH 147
Cdd:COG4785 148 GIALYYLGRYELAIADLEKALELDPNDPERA 178
|
|
| CbpA |
COG2214 |
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription]; |
395-461 |
5.33e-15 |
|
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
Pssm-ID: 441816 [Multi-domain] Cd Length: 91 Bit Score: 70.52 E-value: 5.33e-15
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2553878293 395 RDYYKILGVSRSANKQEIIKAYRKLAQQWHPDnfQSEADKKEAEKKFIDIASAKEVLTDPEMRQKFD 461
Cdd:COG2214 5 KDHYAVLGVPPDASLEEIRQAYRRLAKLLHPD--RGGELKALAEELFQRLNEAYEVLSDPERRAEYD 69
|
|
| PRK14279 |
PRK14279 |
molecular chaperone DnaJ; |
395-461 |
6.61e-15 |
|
molecular chaperone DnaJ;
Pssm-ID: 237655 [Multi-domain] Cd Length: 392 Bit Score: 76.31 E-value: 6.61e-15
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2553878293 395 RDYYKILGVSRSANKQEIIKAYRKLAQQWHPDnfqSEADKKEAEKKFIDIASAKEVLTDPEMRQKFD 461
Cdd:PRK14279 9 KDFYKELGVSSDASAEEIKKAYRKLARELHPD---ANPGDPAAEERFKAVSEAHDVLSDPAKRKEYD 72
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
44-285 |
8.63e-15 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 76.96 E-value: 8.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 44 HHLEMGRKLLAAGQLAEALSHYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAIQLKPDFLAARLQRGNILLKQ 123
Cdd:COG3914 46 LLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLAL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 124 GSTQEAREDFQAVLNHSPDHEEAHDQLLKAdkleslqeeAHEAHRRGDcriAVQVLEHVIELSPWDPESRELRAECYIQL 203
Cdd:COG3914 126 GRLEEALAALRRALALNPDFAEAYLNLGEA---------LRRLGRLEE---AIAALRRALELDPDNAEALNNLGNALQDL 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 204 GEPRKAIMDLTPASRLRADNRAAFLKLSQLHYSLGEHHDSLNQVRECLKLDQDDKECFALYkqvkKLSKQLDSAEELISE 283
Cdd:COG3914 194 GRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFA----LLYLPDDDPAELLAL 269
|
..
gi 2553878293 284 QR 285
Cdd:COG3914 270 AR 271
|
|
| PRK14296 |
PRK14296 |
chaperone protein DnaJ; Provisional |
393-461 |
1.03e-14 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237666 [Multi-domain] Cd Length: 372 Bit Score: 75.75 E-value: 1.03e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2553878293 393 RKRDYYKILGVSRSANKQEIIKAYRKLAQQWHPDnFQSEADkkeAEKKFIDIASAKEVLTDPEMRQKFD 461
Cdd:PRK14296 2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPD-LNKSPD---AHDKMVEINEAADVLLDKDKRKQYD 66
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
45-169 |
1.90e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 70.22 E-value: 1.90e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 45 HLEMGRKLLAAGQLAEALSHYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAIQLKPDFLAARLQRGNILLKQG 124
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 2553878293 125 STQEAREDFQAVLNHSPDHEEAHDQLLKADKLESLQEEAHEAHRR 169
Cdd:COG4783 87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEK 131
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
44-216 |
2.23e-14 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 72.26 E-value: 2.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 44 HHLEMGRKLLAAGQLAEAlshYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAIQLKPDFLAARLQRGNILLKQ 123
Cdd:COG4785 44 LALALAAAALAAAALAAE---RIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 124 GSTQEAREDFQAVLNHSPDHEEAHDQLlkadkleslqeeAHEAHRRGDCRIAVQVLEHVIELSPWDPESRELRAECYIQL 203
Cdd:COG4785 121 GDYDAALEDFDRALELDPDYAYAYLNR------------GIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKL 188
|
170
....*....|...
gi 2553878293 204 GePRKAIMDLTPA 216
Cdd:COG4785 189 D-PEKALALLLED 200
|
|
| PRK14285 |
PRK14285 |
chaperone protein DnaJ; Provisional |
394-493 |
4.57e-14 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 172773 [Multi-domain] Cd Length: 365 Bit Score: 73.49 E-value: 4.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 394 KRDYYKILGVSRSANKQEIIKAYRKLAQQWHPDNFQseaDKKEAEKKFIDIASAKEVLTDPEMRQKFDSgedpldpenqq 473
Cdd:PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNK---GNKEAESIFKEATEAYEVLIDDNKRAQYDR----------- 67
|
90 100
....*....|....*....|
gi 2553878293 474 ggggggprewpFGFNPFEGG 493
Cdd:PRK14285 68 -----------FGHTAFEGG 76
|
|
| termin_org_DnaJ |
TIGR03835 |
terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ ... |
394-470 |
4.77e-14 |
|
terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274808 [Multi-domain] Cd Length: 871 Bit Score: 74.85 E-value: 4.77e-14
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2553878293 394 KRDYYKILGVSRSANKQEIIKAYRKLAQQWHPDNFQSeadkKEAEKKFIDIASAKEVLTDPEMRQKFDS-GEDPLDPE 470
Cdd:TIGR03835 1 KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA----PDAASIFAEINEANDVLSNPKKRANYDKyGHDGVDRE 74
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
183-443 |
7.69e-14 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 71.19 E-value: 7.69e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 183 IELSPWDPESRELRAECYIQLGEPRKAIMDLTPASRLRADNRAAFLKLSQLHYSLGEHHDSLNQVRECLKLDQDDKEcfA 262
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE--A 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 263 LYKQvkklskqldsAEELISEQRFQEAIEKYESVMRTEPNVAF-YTNKAkertcFCLVKMKSAEEAVDICSEAHQREPQN 341
Cdd:COG0457 79 LNNL----------GLALQALGRYEEALEDYDKALELDPDDAEaLYNLG-----LALLELGRYDEAIEAYERALELDPDD 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 342 IHILRDRAEAYILMQEYEKAVEDYQEAREFDQENQELREGLDRAHKLLKISRKRDYYKILGVSRSANKQEIIKAYRKLAQ 421
Cdd:COG0457 144 ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELL 223
|
250 260
....*....|....*....|..
gi 2553878293 422 QWHPDNFQSEADKKEAEKKFID 443
Cdd:COG0457 224 LLALALLLALRLAALALYQYRA 245
|
|
| PRK14287 |
PRK14287 |
chaperone protein DnaJ; Provisional |
394-461 |
4.42e-13 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237659 [Multi-domain] Cd Length: 371 Bit Score: 70.81 E-value: 4.42e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2553878293 394 KRDYYKILGVSRSANKQEIIKAYRKLAQQWHPDNFQSEadkkEAEKKFIDIASAKEVLTDPEMRQKFD 461
Cdd:PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAP----DAEDKFKEVKEAYDTLSDPQKKAHYD 66
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
50-264 |
8.71e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 70.79 E-value: 8.71e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 50 RKLLAAGQLAEALSHYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAIQLKPDFLAARLQRGNILLKQGSTQEA 129
Cdd:COG3914 18 LAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 130 REDFQAVLNHSPDHEEAHDQLlkadkleslqeeAHEAHRRGDCRIAVQVLEHVIELSPWDPESRELRAECYIQLGEPRKA 209
Cdd:COG3914 98 LALYRRALALNPDNAEALFNL------------GNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEA 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2553878293 210 IMDLTPASRLRADNRAAFLKLSQLHYSLGEHHDSLNQVRECLKLDQDDKECFALY 264
Cdd:COG3914 166 IAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
31-143 |
3.36e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 64.06 E-value: 3.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 31 LDGVLGATPVEIEHHLEMGRKLLAAGQLAEALSHYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAIQLKPDFL 110
Cdd:COG4783 27 LEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHP 106
|
90 100 110
....*....|....*....|....*....|...
gi 2553878293 111 AARLQRGNILLKQGSTQEAREDFQAVLNHSPDH 143
Cdd:COG4783 107 EAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
60-198 |
3.55e-12 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 63.49 E-value: 3.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 60 EALSHYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAIQLKPDFLAARLQRGNILLKQGSTQEAREDFQAVLNH 139
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2553878293 140 SPDHEEAHDQLlkadkleslqeeAHEAHRRGDCRIAVQVLEHVIELSPWDPESRELRAE 198
Cdd:COG4235 81 DPDNPEALYLL------------GLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
31-210 |
4.11e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 66.68 E-value: 4.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 31 LDGVLGATPVEIEHHLEMGRKLLAAGQLAEALSHYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAIQLKPDFL 110
Cdd:COG2956 99 LEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCA 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 111 AARLQRGNILLKQGSTQEAREDFQAVLNHSPDHEEAHDQLLKAdkleslqeeaheAHRRGDCRIAVQVLEHVIELSPWDP 190
Cdd:COG2956 179 RALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAEL------------YEKLGDPEEALELLRKALELDPSDD 246
|
170 180
....*....|....*....|
gi 2553878293 191 ESRELrAECYIQLGEPRKAI 210
Cdd:COG2956 247 LLLAL-ADLLERKEGLEAAL 265
|
|
| PRK14292 |
PRK14292 |
chaperone protein DnaJ; Provisional |
396-461 |
4.95e-12 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237662 [Multi-domain] Cd Length: 371 Bit Score: 67.22 E-value: 4.95e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2553878293 396 DYYKILGVSRSANKQEIIKAYRKLAQQWHPDNFQSEAdkkeAEKKFIDIASAKEVLTDPEMRQKFD 461
Cdd:PRK14292 3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKG----AAEKFAQINEAYAVLSDAEKRAHYD 64
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
30-146 |
6.54e-12 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 62.72 E-value: 6.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 30 QLDGVLGATPVEIEHHLEMGRKLLAAGQLAEALSHYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAIQLKPDF 109
Cdd:COG4235 5 RLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDN 84
|
90 100 110
....*....|....*....|....*....|....*..
gi 2553878293 110 LAARLQRGNILLKQGSTQEAREDFQAVLNHSPDHEEA 146
Cdd:COG4235 85 PEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
|
|
| DjlA |
COG1076 |
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones]; |
393-454 |
1.72e-11 |
|
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440694 [Multi-domain] Cd Length: 75 Bit Score: 59.81 E-value: 1.72e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2553878293 393 RKRDYYKILGVSRSANKQEIIKAYRKLAQQWHPDNF---QSEADKKEAEKKFIDIASAKEVLTDP 454
Cdd:COG1076 2 QLDDAFELLGLPPDADDAELKRAYRKLQREHHPDRLaagLPEEEQRLALQKAAAINEAYETLKDP 66
|
|
| PRK10266 |
PRK10266 |
curved DNA-binding protein; |
395-461 |
3.03e-11 |
|
curved DNA-binding protein;
Pssm-ID: 182347 [Multi-domain] Cd Length: 306 Bit Score: 64.46 E-value: 3.03e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2553878293 395 RDYYKILGVSRSANKQEIIKAYRKLAQQWHPDnFQSEADkkeAEKKFIDIASAKEVLTDPEMRQKFD 461
Cdd:PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPD-VSKEPD---AEARFKEVAEAWEVLSDEQRRAEYD 66
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
110-257 |
3.19e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.98 E-value: 3.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 110 LAARLQRGNILLKQGSTQEAREDFQAVLNHSPDHEEAHDQLlkadkleslqeeAHEAHRRGDCRIAVQVLEHVIELSPWD 189
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALL------------GEILLQLGDLDEAIVLLHEALELDPDE 71
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2553878293 190 PESRELRAECYIQLGEPRKAIMDLTPASRLRADNRAAFLKLSQLHYSLGEHHDSLNQVRECLKLDQDD 257
Cdd:COG4783 72 PEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PTZ00037 |
PTZ00037 |
DnaJ_C chaperone protein; Provisional |
393-468 |
5.19e-11 |
|
DnaJ_C chaperone protein; Provisional
Pssm-ID: 240236 [Multi-domain] Cd Length: 421 Bit Score: 64.46 E-value: 5.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 393 RKRD-----YYKILGVSRSANKQEIIKAYRKLAQQWHPdnfqseaDKKEAEKKFIDIASAKEVLTDPEMRQKFDS-GEDP 466
Cdd:PTZ00037 21 RKREvdnekLYEVLNLSKDCTTSEIKKAYRKLAIKHHP-------DKGGDPEKFKEISRAYEVLSDPEKRKIYDEyGEEG 93
|
..
gi 2553878293 467 LD 468
Cdd:PTZ00037 94 LE 95
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
52-142 |
1.59e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 57.87 E-value: 1.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 52 LLAAGQLAEALSHYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALpDLTQAIQLKPDFLAARLQRGNILLKQGSTQEARE 131
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|.
gi 2553878293 132 DFQAVLNHSPD 142
Cdd:COG3063 81 YLERALELDPS 91
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
218-473 |
3.17e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 60.41 E-value: 3.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 218 RLRADNRAAFLKLSQLHYSLGEHHDSLNQVRECLKLDQDDKEcfALYKQvkklskqldsAEELISEQRFQEAIEKYESVM 297
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAE--ALYNL----------GLAYLRLGRYEEALADYEQAL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 298 RTEPNVA-FYTNKAkertcFCLVKMKSAEEAVDICSEAHQREPQNIHILRDRAEAYILMQEYEKAVEDYQEAREFDQENQ 376
Cdd:COG0457 70 ELDPDDAeALNNLG-----LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDA 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 377 ELREGLDRAHKLLKisrkrDYYKILGVSRSANKQEIIKAYRKLAQQWHPDNFQSEADKKEAEKKFIDIASAKEVLTDPEM 456
Cdd:COG0457 145 DALYNLGIALEKLG-----RYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAAL 219
|
250
....*....|....*..
gi 2553878293 457 RQKFDSGEDPLDPENQQ 473
Cdd:COG0457 220 AELLLLALALLLALRLA 236
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
195-451 |
4.71e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 60.51 E-value: 4.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 195 LRAECYIQLGEPRKAIMDLTPASRLRADNRAAFLKLSQLHYSLGEHHDSLNQVRECLKLDQDDKEcfALYKQvkklskql 274
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAE--ALLEL-------- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 275 dsAEELISEQRFQEAIEKYESVMRTEPNVAfytnKAKERTCFCLVKMKSAEEAVDICSEAHQREPQNIHILRDRAEAYIL 354
Cdd:COG2956 83 --AQDYLKAGLLDRAEELLEKLLELDPDDA----EALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLE 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 355 MQEYEKAVEDYQEAREFDQENQELREGLDRAHKLLKisrkrdyykilgvsrsaNKQEIIKAYRKLAQQwHPDNFQSEADK 434
Cdd:COG2956 157 QGDYDEAIEALEKALKLDPDCARALLLLAELYLEQG-----------------DYEEAIAALERALEQ-DPDYLPALPRL 218
|
250
....*....|....*..
gi 2553878293 435 KEAEKKFIDIASAKEVL 451
Cdd:COG2956 219 AELYEKLGDPEEALELL 235
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
153-293 |
8.50e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.12 E-value: 8.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 153 ADKLESLQEEAHEAHRRGDCRIAVQVLEHVIELSPWDPESRELRAECYIQLGEPRKAIMDLTPASRLRADNRAAFLKLSQ 232
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2553878293 233 LHYSLGEHHDSLNQVRECLKLDQDDKECFALYKQVKKLSKQLDSAEEliseqRFQEAIEKY 293
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA-----ALEKALELD 136
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
95-430 |
8.88e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 61.16 E-value: 8.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 95 ALPDLTQAIQLKPDFLAARLQRGNILLKQGSTQEARedfQAVLNHSPDHEEAHDQLLKADKLESLQEEAHEAHRRGDCRI 174
Cdd:COG3914 20 AAAAAELALAAELEAAALAAALGLALLLLAALAEAA---AAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 175 AVQVLEHVIELSPWDPESRELRAECYIQLGEPRKAIMDLTPASRLRADNRAAFLKLSQLHYSLGehhdslnqvreclkld 254
Cdd:COG3914 97 ALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG---------------- 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 255 qddkecfalykqvkklskqldsaeeliseqRFQEAIEKYESVMRTEPN-VAFYTNKAkertcFCLVKMKSAEEAVDICSE 333
Cdd:COG3914 161 ------------------------------RLEEAIAALRRALELDPDnAEALNNLG-----NALQDLGRLEEAIAAYRR 205
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 334 AHQREPQNIHILrdraeAYILMQEYEkaVEDYQEAREFDQENQELREGLDRAHKLLKISrkrdyykilgvSRSANKQEII 413
Cdd:COG3914 206 ALELDPDNADAH-----SNLLFALRQ--ACDWEVYDRFEELLAALARGPSELSPFALLY-----------LPDDDPAELL 267
|
330
....*....|....*..
gi 2553878293 414 KAYRKLAQQWHPDNFQS 430
Cdd:COG3914 268 ALARAWAQLVAAAAAPE 284
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
48-243 |
3.10e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 59.71 E-value: 3.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 48 MGRKLLAAGQLAEALSHYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAIQLKPDFLAARLQRGNILLKQGSTQ 127
Cdd:TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTE 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 128 EAREDFQAVLNHSPDH-----------------EEAHDQLLKADKLESLQEEA---HEAHRR-GDCRIAVQVLEHVIELS 186
Cdd:TIGR02917 687 SAKKIAKSLQKQHPKAalgfelegdlylrqkdyPAAIQAYRKALKRAPSSQNAiklHRALLAsGNTAEAVKTLEAWLKTH 766
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2553878293 187 PWDPESRELRAECYIQLGEPRKAIMDLTPASRLRADNRAAflkLSQLHYSLGEHHDS 243
Cdd:TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVV---LNNLAWLYLELKDP 820
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
159-379 |
4.28e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 58.85 E-value: 4.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 159 LQEEAHEAHRRGDCRIAVQVLEHVIELSPWDPESRELRAECYIQLGEPRKAIMDLTPASRLRADNRAAFLKLSQLHYSLG 238
Cdd:COG3914 13 AAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 239 EHHDSLNQVRECLKLDQDDKECFALYkqvkklskqldsAEELISEQRFQEAIEKYESVMRTEP-NVAFYTNKAKertcfC 317
Cdd:COG3914 93 RYEEALALYRRALALNPDNAEALFNL------------GNLLLALGRLEEALAALRRALALNPdFAEAYLNLGE-----A 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2553878293 318 LVKMKSAEEAVDICSEAHQREPQNIHILRDRAEAYILMQEYEKAVEDYQEAREFDQENQELR 379
Cdd:COG3914 156 LRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
52-141 |
1.41e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.81 E-value: 1.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 52 LLAAGQLAEALSHYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAIQLKPDFLAARLQRGNILLKQGSTQEARE 131
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143
|
90
....*....|
gi 2553878293 132 DFQAVLNHSP 141
Cdd:COG5010 144 ALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
128-270 |
4.43e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.93 E-value: 4.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 128 EAREDFQAVLNHSPDHEEAHDQLlkadkleslqeeAHEAHRRGDCRIAVQVLEHVIELSPWDPESRELRAECYIQLGEPR 207
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLL------------GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTE 68
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2553878293 208 KAIMDLTPASRLRADNRAAFLKLSQLHYSLGEHHDSLNQVRECLKLDQDDKECFALYKQVKKL 270
Cdd:COG4235 69 EAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
43-375 |
5.62e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 55.47 E-value: 5.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 43 EHHLEMGRKLLAAGQLAEALSHYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAIQLKPDFLAARLQRGNILLK 122
Cdd:TIGR02917 23 EELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 123 QGSTQEAREDFQAV-LNHSPDH-----------------EEAHDQLLKA-----DKLESLQEEAHEAHRRGDCRIAVQVL 179
Cdd:TIGR02917 103 QGKFQQVLDELPGKtLLDDEGAaellalrglaylglgqlELAQKSYEQAlaidpRSLYAKLGLAQLALAENRFDEARALI 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 180 EHVIELSPWDPESRELRAECYIQLGEPRKAIMDLTPASRLRADNRAAFLKLSQLHYSLGEhhdslnqvreclkLDQDDKE 259
Cdd:TIGR02917 183 DEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGE-------------FEEAEKH 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 260 CFALYKQVKKlSKQLDSAEELISEQR--FQEAIEKYESVMRTEPN----------VAFYTNK------------------ 309
Cdd:TIGR02917 250 ADALLKKAPN-SPLAHYLKALVDFQKknYEDARETLQDALKSAPEylpalllagaSEYQLGNleqayqylnqilkyapns 328
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2553878293 310 --AKERTCFCLVKMKSAEEAVDICSEAHQREPQNIHILRDRAEAYILMQEYEKAVEDYQEAREFDQEN 375
Cdd:TIGR02917 329 hqARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPEN 396
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
77-401 |
6.60e-08 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 54.99 E-value: 6.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 77 LTYYKRATVFLAMGKSKSALPDLTQAIQLKPDFLAARLQRGNILLKQGSTQEAREDFQAVLnhspdheeahdqllkadkl 156
Cdd:TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKAL------------------- 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 157 eslqeeaheahrrgdcriavqvlehviELSPWDPESRELRAECYIQLGEPRKAIMDLTPASRLRADNRAAFLKLSQLHYS 236
Cdd:TIGR00990 393 ---------------------------KLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 237 LGEHHDSLNQVRECLKLDQDDKECFALYkqvkklskqldsAEELISEQRFQEAIEKYESVMRTEP-------NVAFYTNK 309
Cdd:TIGR00990 446 EGSIASSMATFRRCKKNFPEAPDVYNYY------------GELLLDQNKFDEAIEKFDTAIELEKetkpmymNVLPLINK 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 310 AkertcFCLVKMKSA-EEAVDICSEAHQREPQNIHILRDRAEAYILMQEYEKAVEDYQEAREFDQENQELREGLDRAHKL 388
Cdd:TIGR00990 514 A-----LALFQWKQDfIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEAT 588
|
330
....*....|...
gi 2553878293 389 LKISRKRDYYKIL 401
Cdd:TIGR00990 589 RTQIQVQEDYPVL 601
|
|
| YfgM |
COG2976 |
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ... |
46-159 |
1.31e-07 |
|
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];
Pssm-ID: 442215 [Multi-domain] Cd Length: 207 Bit Score: 52.16 E-value: 1.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 46 LEMGRKLLAAGQLAEALSHYHSAVEGDSKNYLTYYKR---ATVFLAMGKSKSALPDLTQAiqlKPDFLAARLQ--RGNIL 120
Cdd:COG2976 94 LLLAKAAVDAGDLDKAAAQLQWVLDNAKDPALKALARlrlARVLLAQKKYDEALATLDAV---KPEAFAALYAelRGDIL 170
|
90 100 110
....*....|....*....|....*....|....*....
gi 2553878293 121 LKQGSTQEAREDFQAVLNHSPDHEEAHdQLLKAdKLESL 159
Cdd:COG2976 171 LAQGDKAEARAAYQKALAALPEDAPLR-QLLQM-KLDDL 207
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
175-302 |
2.33e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 49.62 E-value: 2.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 175 AVQVLEHVIELSPWDPESRELRAECYIQLGEPRKAIMDLTPASRLRADNRAAFLKLSQLHYSLGEHHDSLNQVRECLKLD 254
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2553878293 255 QDDKECFALYkqvkklskqldsAEELISEQRFQEAIEKYESVMRTEPN 302
Cdd:COG4235 82 PDNPEALYLL------------GLAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
53-375 |
2.33e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 53.55 E-value: 2.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 53 LAAGQLAEALSHYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAIQLKPDFLAARLQRGNILLKQGSTQEARED 132
Cdd:TIGR02917 510 IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAI 589
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 133 FQAVLNHSPDHEEAHDQLLkadkleSLQEEAheahrrGDCRIAVQVLEHVIELSPWDPESRELRAECYIQLGEPRKAIMD 212
Cdd:TIGR02917 590 LNEAADAAPDSPEAWLMLG------RAQLAA------GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITS 657
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 213 LTPASRLRADNRAAFLKLSQLHYSLGEHHDSLNQVRECLKLDQDDKECFALYKQVKKLSKQldsaeeliseqrFQEAIEK 292
Cdd:TIGR02917 658 LKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKD------------YPAAIQA 725
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 293 YESVMRTEPN--VAFYTNKAkertcfcLVKMKSAEEAVDICSEAHQREPQNIHILRDRAEAYILMQEYEKAVEDYQEARE 370
Cdd:TIGR02917 726 YRKALKRAPSsqNAIKLHRA-------LLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVK 798
|
....*
gi 2553878293 371 FDQEN 375
Cdd:TIGR02917 799 KAPDN 803
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
43-145 |
3.58e-07 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 51.42 E-value: 3.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 43 EHHLEMGRKLLAAGQLAEALSHYHSAVEGDSKNYLTY-YKRATVFLAMGKSKSALPDLTQAIQLKPDFLAARLQ--RGNI 119
Cdd:COG4700 90 QNRVRLADALLELGRYDEAIELYEEALTGIFADDPHIlLGLAQALFELGRYAEALETLEKLIAKNPDFKSSDAHllYARA 169
|
90 100
....*....|....*....|....*.
gi 2553878293 120 LLKQGSTQEAREDFQAVLNHSPDHEE 145
Cdd:COG4700 170 LEALGDLEAAEAELEALARRYSGPEA 195
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
50-156 |
6.94e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 48.06 E-value: 6.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 50 RKLLAAGQLAEALSHYHSAVEGDSKNYLT---YYKRATVFLAMGKSKSALPDLTQAIQLKPD---FLAARLQRGNILLKQ 123
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLEL 80
|
90 100 110
....*....|....*....|....*....|...
gi 2553878293 124 GSTQEAREDFQAVLNHSPDHEEAHDQLLKADKL 156
Cdd:COG1729 81 GDYDKARATLEELIKKYPDSEAAKEARARLARL 113
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
31-379 |
8.36e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 51.62 E-value: 8.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 31 LDGVLGATPVEIEHHLEMGRKLLAAGQLAEALSHYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAIQLKPDFL 110
Cdd:TIGR02917 522 FEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSP 601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 111 AARLQRGNILLKQGSTQEAREDFQAVLNHSPDHEEAHDQL----------------------LKADKLESLQEEAHEAHR 168
Cdd:TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLadayavmknyakaitslkraleLKPDNTEAQIGLAQLLLA 681
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 169 RGDCRIAVQVLEHVIELSPWDPESRELRAECYIQLGEPRKAIMDLTPASRlRADNRAAFLKLSQLHYSLGEHHDSLNQVR 248
Cdd:TIGR02917 682 AKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK-RAPSSQNAIKLHRALLASGNTAEAVKTLE 760
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 249 ECLKLDQDDKecFALYKQvkklskqldsAEELISEQRFQEAIEKYESVMRTEP-NVAFYTNKAkertcFCLVKMKSAeEA 327
Cdd:TIGR02917 761 AWLKTHPNDA--VLRTAL----------AELYLAQKDYDKAIKHYQTVVKKAPdNAVVLNNLA-----WLYLELKDP-RA 822
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 2553878293 328 VDICSEAHQREPQNIHILRDRAEAYILMQEYEKAVEDYQEAREFDQENQELR 379
Cdd:TIGR02917 823 LEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIR 874
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
28-169 |
9.89e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.42 E-value: 9.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 28 DLQLDGVLGATPVEIEHHLEMGRKLLAAGQLAEALSHYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAIQLKP 107
Cdd:COG5010 6 GFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP 85
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2553878293 108 DFLAARLQRGNILLKQGSTQEAREDFQAVLNHSPDHEEAHDQLLKADKLESLQEEAHEAHRR 169
Cdd:COG5010 86 NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
269-390 |
1.31e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.88 E-value: 1.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 269 KLSKQLDSAEELISEQRFQEAIEKYESVMRTEP-NVAFYTNKAKertcfCLVKMKSAEEAVDICSEAHQREPQNIHILRD 347
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPdNPEAFALLGE-----ILLQLGDLDEAIVLLHEALELDPDEPEARLN 77
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 2553878293 348 RAEAYILMQEYEKAVEDYQEAREFDQENQELREGLDRAHKLLK 390
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG 120
|
|
| PRK14288 |
PRK14288 |
molecular chaperone DnaJ; |
397-461 |
1.53e-06 |
|
molecular chaperone DnaJ;
Pssm-ID: 172776 [Multi-domain] Cd Length: 369 Bit Score: 50.46 E-value: 1.53e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2553878293 397 YYKILGVSRSANKQEIIKAYRKLAQQWHPDNfqsEADKKEAEKKFIDIASAKEVLTDPEMRQKFD 461
Cdd:PRK14288 5 YYEILEVEKHSNQETIKKSYRKLALKYHPDR---NAGDKEAEEKFKLINEAYGVLSDEKKRALYD 66
|
|
| Alkyl_sulf_dimr |
pfam14863 |
Alkyl sulfatase dimerization; This domain is found in alkyl sulfatases such as the Pseudomonas ... |
157-205 |
2.02e-06 |
|
Alkyl sulfatase dimerization; This domain is found in alkyl sulfatases such as the Pseudomonas aeruginosa SDS hydrolase, where it acts as a dimerization domain
Pssm-ID: 464351 Cd Length: 136 Bit Score: 47.09 E-value: 2.02e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 2553878293 157 ESLQEEAHEAHRRGDCRIAVQVLEHVIELSPWDPESRELRAECYIQLGE 205
Cdd:pfam14863 70 DAVLAKAREAFDAGDYRWAAELLNHLVFADPDNQEARELLADALEQLGY 118
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
277-385 |
2.60e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.92 E-value: 2.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 277 AEELISEQRFQEAIEKYESVMRTEP-NVAFYTNKAkertcFCLVKMKSAEEAVDICSEAHQREPQNIHILRDRAEAYILM 355
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPdNADALLDLA-----EALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQ 98
|
90 100 110
....*....|....*....|....*....|...
gi 2553878293 356 QEYEKAVEDYQEAREFDQENQE---LREGLDRA 385
Cdd:COG4235 99 GDYAEAIAAWQKLLALLPADAParlLEASIAEA 131
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
104-254 |
2.83e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 47.26 E-value: 2.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 104 QLKPDFLAARLQRGNILLKQGSTQEAREDFQAVLNHSPDHEEAHDQLLKADKLESLQEEAHEAH-RRGDCRIAVQVLEHV 182
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYnKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2553878293 183 IELSPWDPESRELRAECYIQLGEPRKAIMDLTPASRLRADNRAAFLKLSQLHYSLGEHHDSLNQVRECLKLD 254
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
85-187 |
3.21e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 45.55 E-value: 3.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 85 VFLAMGKSKSALPDLTQAIQLKPDFLAARLQRGNILLKQGSTQEAREdFQAVLNHSPDHEEAHDQLlkadkleslqeeAH 164
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNL------------AE 67
|
90 100
....*....|....*....|...
gi 2553878293 165 EAHRRGDCRIAVQVLEHVIELSP 187
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDP 90
|
|
| djlA |
PRK09430 |
co-chaperone DjlA; |
396-426 |
3.93e-06 |
|
co-chaperone DjlA;
Pssm-ID: 236512 [Multi-domain] Cd Length: 267 Bit Score: 48.27 E-value: 3.93e-06
10 20 30
....*....|....*....|....*....|.
gi 2553878293 396 DYYKILGVSRSANKQEIIKAYRKLAQQWHPD 426
Cdd:PRK09430 201 DAYKVLGVSESDDDQEIKRAYRKLMSEHHPD 231
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
57-213 |
1.07e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.72 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 57 QLAEALSHYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAIQLKPDFLAARLQRGNILLKQGSTQEAREDFQAV 136
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2553878293 137 LNHSPDHEEAHDQLlkadkleslqeeAHEAHRRGDCRIAVQVLEHVIELSPWDPESRELRAECYIQLGEPRKAIMDL 213
Cdd:COG5010 81 LQLDPNNPELYYNL------------ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAAL 145
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
239-461 |
2.14e-05 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 47.47 E-value: 2.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 239 EHHDSLNQVRECLKLDQDDKECFA---LYKQVKKLSKQLDSAEELISEQRFQEAIEkyESVMRTEPNVAFYTNKAKERTC 315
Cdd:PTZ00341 440 EEEHSGDANEEELSVDEHVEEHNAddsGEQQSDDESGEHQSVNEIVEEQSVNEHVE--EPTVADIVEQETVDEHVEEPAV 517
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 316 FCLVKMKSAEEAVD--ICSEAHQREPQNIhilrdrAEAYIlmqeyEKAVEDYQEAREFDqenqelregldrahKLLKISR 393
Cdd:PTZ00341 518 DENEEQQTADEHVEepTIAEEHVEEEIST------AEEHI-----EEPASDVQQDSEAA--------------PTIEIPD 572
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2553878293 394 KRdYYKILGVSRSANKQEIIKAYRKLAQQWHPDNFQSeadkKEAEKKFIDIASAKEVLTDPEMRQKFD 461
Cdd:PTZ00341 573 TL-FYDILGVGVNADMKEISERYFKLAENYYPPKRSG----NEGFHKFKKINEAYQILGDIDKKKMYN 635
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
49-259 |
4.89e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 44.52 E-value: 4.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 49 GRKLLAAGQLAEALSHYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAI------QLKPDFLAARLQRGNILLK 122
Cdd:COG4785 6 LALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAeridraLALPDLAQLYYERGVAYDS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 123 QGSTQEAREDFQAVLNHSPDHEEAHDQllkadkleslqeeaheahrrgdcriavqvlehvielspwdpesrelRAECYIQ 202
Cdd:COG4785 86 LGDYDLAIADFDQALELDPDLAEAYNN----------------------------------------------RGLAYLL 119
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2553878293 203 LGEPRKAIMDLTPASRLRADNRAAFLKLSQLHYSLGEHHDSLNQVRECLKLDQDDKE 259
Cdd:COG4785 120 LGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPE 176
|
|
| tol_pal_ybgF |
TIGR02795 |
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ... |
78-197 |
5.25e-05 |
|
tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Pssm-ID: 188247 [Multi-domain] Cd Length: 117 Bit Score: 42.65 E-value: 5.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 78 TYYKRATVFLAMGKSKSALPDLTQAIQLKPDF-LA--ARLQRGNILLKQGSTQEAREDFQAVLNHSPDHEEAHDQLLKAD 154
Cdd:TIGR02795 2 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKStYApnAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALLKLG 81
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 2553878293 155 klESLQEEAHEAHrrgdcriAVQVLEHVIELSPWDPESRELRA 197
Cdd:TIGR02795 82 --MSLQELGDKEK-------AKATLQQVIKRYPGSSAAKLAQK 115
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
317-389 |
5.51e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.41 E-value: 5.51e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2553878293 317 CLVKMKSAEEAVDICSEAHQREPQNIHILRDRAEAYILMQEYEKAVEDYQEAREFDQENQELREGLDRAHKLL 389
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
288-386 |
1.30e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.92 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 288 EAIEKYESVMRTEP-NVAFYTNKAKertcfCLVKMKSAEEAVDICSEAHQREPQNIHILRDRAEAYILMQEYEKAVEDYQ 366
Cdd:COG4235 1 EAIARLRQALAANPnDAEGWLLLGR-----AYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLE 75
|
90 100
....*....|....*....|
gi 2553878293 367 EAREFDQENQELREGLDRAH 386
Cdd:COG4235 76 RALALDPDNPEALYLLGLAA 95
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
166-256 |
1.74e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.54 E-value: 1.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 166 AHRRGDCRIAVQVLEHVIELSPWDPESRELRAECYIQLGEPRKAImDLTPASRLRADNRAAFLKLSQLHYSLGEHHDSLN 245
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|.
gi 2553878293 246 QVRECLKLDQD 256
Cdd:COG3063 81 YLERALELDPS 91
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
282-441 |
1.99e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 42.98 E-value: 1.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 282 SEQRFQEAIEKYESVMRTEP-NVAFYTNKAkertcFCLVKMKSAEEAVDICSEAHQREPQNIHILRDRAEAYILMQEYEK 360
Cdd:COG4785 85 SLGDYDLAIADFDQALELDPdLAEAYNNRG-----LAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 361 AVEDYQEAREFDQENQElregldRAHKLLKISRKRDYykilgvsrsankqeiIKAYRKLAQQWhPDNFQSEADKKEAEKK 440
Cdd:COG4785 160 AIADLEKALELDPNDPE------RALWLYLAERKLDP---------------EKALALLLEDW-ATAYLLQGDTEEAREL 217
|
.
gi 2553878293 441 F 441
Cdd:COG4785 218 F 218
|
|
| BDS1 |
COG2015 |
Alkyl sulfatase BDS1 and related hydrolases, metallo-beta-lactamase superfamily [Secondary ... |
157-205 |
2.14e-04 |
|
Alkyl sulfatase BDS1 and related hydrolases, metallo-beta-lactamase superfamily [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 441618 [Multi-domain] Cd Length: 629 Bit Score: 44.06 E-value: 2.14e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 2553878293 157 ESLQEEAHEAHRRGDCRIAVQVLEHVIELSPWDPESRELRAECYIQLGE 205
Cdd:COG2015 430 DAVLAKARAAFDAGDYRWAAELLNHLVFADPDNQEARELLADALEQLGY 478
|
|
| BamD |
COG4105 |
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ... |
123-210 |
4.29e-04 |
|
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443281 [Multi-domain] Cd Length: 254 Bit Score: 42.18 E-value: 4.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 123 QGSTQEAREDFQAVLNHSPDHEEAHDQLLKADKLESLQEEaHEAH------RRGDCRIAVQVLEHVIEL---SPWDPESR 193
Cdd:COG4105 127 QTSTRKAIEAFQELINRYPDSEYAEDAKKRIDELRDKLAR-KELEvaryylKRGAYVAAINRFQNVLEDypdTPAVEEAL 205
|
90
....*....|....*..
gi 2553878293 194 ELRAECYIQLGEPRKAI 210
Cdd:COG4105 206 YLLVEAYYALGRYDEAQ 222
|
|
| ZUO1 |
COG5269 |
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ... |
393-462 |
4.35e-04 |
|
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 227594 [Multi-domain] Cd Length: 379 Bit Score: 42.71 E-value: 4.35e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2553878293 393 RKRDYYKILGVSR---SANKQEIIKAYRKLAQQWHPDNfQSEADKKEAEKKFIDIASAKEVLTDPEMRQKFDS 462
Cdd:COG5269 41 KKVDLYALLGLSKyrtKAIPPQILKAHKKKVYKYHPDK-TAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDS 112
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
157-234 |
5.87e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 41.85 E-value: 5.87e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2553878293 157 ESLQEEAHEAHRRGDCRIAVQVLEHVIELSPWDPESRELRAECYIQLGEPRKAIMDLTPASRLRADNRAA-FLKLSQLH 234
Cdd:cd24142 1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEkYLYLGQLS 79
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
218-372 |
6.02e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 40.33 E-value: 6.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 218 RLRADNRAAFLKLSQLHYSLGEHHDSLNQVRECLKLDQDDKECFALYKQVKKLSKQLDSAEELISEQRFQEAIEKYESVM 297
Cdd:COG5010 2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2553878293 298 RTEPN-VAFYTNKAkertcFCLVKMKSAEEAVDICSEAHQREPQNIHILRDRAEAYILMQEYEKAVEDYQEAREFD 372
Cdd:COG5010 82 QLDPNnPELYYNLA-----LLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| TPR_21 |
pfam09976 |
Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat. |
46-159 |
7.63e-04 |
|
Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat.
Pssm-ID: 430959 [Multi-domain] Cd Length: 194 Bit Score: 40.65 E-value: 7.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 46 LEMGRKLLAAGQLAEALSHYHSAVE-GDSKNY--LTYYKRATVFLAMGKSKSALPDLTQAIQlkPDFLAARLQ-RGNILL 121
Cdd:pfam09976 80 LLLAKAAVEAGDLAAAKAQLEWVADnAKDEALkaLARLRLARVLLAQGKYDEALKTLDAVTP--AAFAALYAElRGDILV 157
|
90 100 110
....*....|....*....|....*....|....*...
gi 2553878293 122 KQGSTQEAREDFQAVLNHSPdhEEAHDQLLKAdKLESL 159
Cdd:pfam09976 158 AQGKTDEARAAYQAALDALD--AGAPRPLLQM-KLDDL 192
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
90-147 |
7.89e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.95 E-value: 7.89e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 2553878293 90 GKSKSALPDLTQAIQLKPDFLAARLQRGNILLKQGSTQEAREDFQAVLNHSPDHEEAH 147
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYA 59
|
|
| OM_YfiO |
TIGR03302 |
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ... |
123-209 |
9.26e-04 |
|
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274513 [Multi-domain] Cd Length: 235 Bit Score: 41.00 E-value: 9.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 123 QGSTQEAREDFQAVLNHSPDHEEAHDQLLKADKLESLQEEaHEAH------RRGDCRIAVQVLEHVIE---LSPWDPESR 193
Cdd:TIGR03302 128 QTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAG-KELYvarfylKRGAYVAAINRFQTVVEnypDTPATEEAL 206
|
90
....*....|....*.
gi 2553878293 194 ELRAECYIQLGEPRKA 209
Cdd:TIGR03302 207 ARLVEAYLKLGLTDLA 222
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
119-225 |
1.05e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.23 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 119 ILLKQGSTQEAREDFQAVLNHSPDHEEAHDQLlkadkleslqeeAHEAHRRGDCRIAVQvLEHVIELSPWDPESRELRAE 198
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNL------------GLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAE 67
|
90 100
....*....|....*....|....*..
gi 2553878293 199 CYIQLGEPRKAIMDLTPASRLRADNRA 225
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPSALR 94
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
86-198 |
1.13e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.82 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 86 FLAMGKSKSALPDLTQAIQLKPD---FLAARLQRGNILLKQGSTQEAREDFQAVLNHSPDHEEAHDQLLKADKLeslqee 162
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLS------ 76
|
90 100 110
....*....|....*....|....*....|....*.
gi 2553878293 163 aheAHRRGDCRIAVQVLEHVIELSPWDPESRELRAE 198
Cdd:COG1729 77 ---YLELGDYDKARATLEELIKKYPDSEAAKEARAR 109
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
80-144 |
1.85e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.93 E-value: 1.85e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2553878293 80 YKRATVFLAMGKSKSALPDLTQAI---QLKPDFLAARLQRGNILLKQGSTQEAREDFQAVLNHSPDHE 144
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALarfPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
46-209 |
1.86e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 41.22 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 46 LEMGRKLLAAGQLAEALSHYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAIQLKPDFLAArlQRGNILLKQgs 125
Cdd:PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNA--VRGLANLYR-- 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 126 tQEAREDFQAVLNH-SPDHEEAHDQLLKADKLESLQEEAHEAHRRGDCRIAVQVLEHVIELSPWDP-----ESRELRaec 199
Cdd:PRK11447 431 -QQSPEKALAFIASlSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVwltyrLAQDLR--- 506
|
170
....*....|
gi 2553878293 200 yiQLGEPRKA 209
Cdd:PRK11447 507 --QAGQRSQA 514
|
|
| PTZ00100 |
PTZ00100 |
DnaJ chaperone protein; Provisional |
394-442 |
2.61e-03 |
|
DnaJ chaperone protein; Provisional
Pssm-ID: 240265 Cd Length: 116 Bit Score: 37.91 E-value: 2.61e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 2553878293 394 KRDYYKILGVSRSANKQEIIKAYRKLAQQWHPDNFQSE--ADKKEAEKKFI 442
Cdd:PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTyiASKVNEAKDLL 114
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
39-111 |
4.02e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 36.69 E-value: 4.02e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2553878293 39 PVEIEHHLEMGRKLLAAGQLAEALShYHSAVEGDSKNYLTYYKRATVFLAMGKSKSALPDLTQAIQLKPDFLA 111
Cdd:COG3063 23 PDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSALR 94
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
280-377 |
5.55e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 36.30 E-value: 5.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 280 LISEQRFQEAIEKYESVMRTEPNVA-FYTNKAkertcFCLVKMKSAEEAVDIcSEAHQREPQNIHILRDRAEAYILMQEY 358
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNAdALNNLG-----LLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDY 75
|
90
....*....|....*....
gi 2553878293 359 EKAVEDYQEAREFDQENQE 377
Cdd:COG3063 76 DEALAYLERALELDPSALR 94
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
132-244 |
6.68e-03 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 39.20 E-value: 6.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553878293 132 DFQAVLNHSPDHEEAHDQLLKadkleslqEEAHEAHRRGDCRIAVQVLEHVIELSPwDPESRELRAECYIQLGEPRKAIM 211
Cdd:TIGR00990 111 DESSVANLSEEERKKYAAKLK--------EKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVE 181
|
90 100 110
....*....|....*....|....*....|...
gi 2553878293 212 DLTPASRLRADNRAAFLKLSQLHYSLGEHHDSL 244
Cdd:TIGR00990 182 DTTAALELDPDYSKALNRRANAYDGLGKYADAL 214
|
|
| PRK10747 |
PRK10747 |
putative protoheme IX biogenesis protein; Provisional |
117-170 |
7.59e-03 |
|
putative protoheme IX biogenesis protein; Provisional
Pssm-ID: 182695 [Multi-domain] Cd Length: 398 Bit Score: 38.53 E-value: 7.59e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 2553878293 117 GNILLKQGSTQEAREDFQAVLNHSPDheeAHDQLLKADKLESLQ--EEAHEAHRRG 170
Cdd:PRK10747 335 GQLLMKHGEWQEASLAFRAALKQRPD---AYDYAWLADALDRLHkpEEAAAMRRDG 387
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
348-375 |
8.22e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 33.93 E-value: 8.22e-03
10 20
....*....|....*....|....*...
gi 2553878293 348 RAEAYILMQEYEKAVEDYQEAREFDQEN 375
Cdd:pfam00515 7 LGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
348-375 |
8.49e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 33.96 E-value: 8.49e-03
|
| |
