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Conserved domains on  [gi|56118498|ref|NP_571397|]
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homeobox protein Dlx3b [Danio rerio]

Protein Classification

DLL_N and homeodomain domain-containing protein( domain architecture ID 11193609)

DLL_N and homeodomain domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
126-182 1.36e-27

Homeodomain;


:

Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 100.65  E-value: 1.36e-27
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 56118498   126 RKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKK 182
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
DLL_N pfam12413
Homeobox protein distal-less-like N terminal; This domain family is found in eukaryotes, and ...
 28-104 2.45e-19

Homeobox protein distal-less-like N terminal; This domain family is found in eukaryotes, and is approximately 80 amino acids in length. The family is found in association with pfam00046. This family is the N terminal of a homeobox protein involved in embryonic development and adult neural regeneration.


:

Pssm-ID: 463567  Cd Length: 83  Bit Score: 80.17  E-value: 2.45e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56118498    28 KDSPTLPESSATDMGYYSS-HHEYYQSP---PYPQQMNSYHQFNLSGMGATpGAYPTKT-EYPYNT-YRQYGHYNRDLQT 101
Cdd:pfam12413   1 QDSPTLPESSATDSGYYSPqQQHYYGSCagqPYGQPLNSYQYFNLNGMNGT-GAYSTKAyEYGYNTsYRQYGAYGRSQSP 79


                  ...
gi 56118498   102 PPQ 104
Cdd:pfam12413  80 PPQ 82
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
126-182 1.36e-27

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 100.65  E-value: 1.36e-27
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 56118498   126 RKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKK 182
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 126-181 1.58e-23

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 90.00  E-value: 1.58e-23
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 56118498    126 RKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFK 181
Cdd:smart00389   2 RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 126-182 3.74e-22

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 86.53  E-value: 3.74e-22
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 56118498 126 RKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKK 182
Cdd:cd00086   1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKR 57
DLL_N pfam12413
Homeobox protein distal-less-like N terminal; This domain family is found in eukaryotes, and ...
 28-104 2.45e-19

Homeobox protein distal-less-like N terminal; This domain family is found in eukaryotes, and is approximately 80 amino acids in length. The family is found in association with pfam00046. This family is the N terminal of a homeobox protein involved in embryonic development and adult neural regeneration.


Pssm-ID: 463567  Cd Length: 83  Bit Score: 80.17  E-value: 2.45e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56118498    28 KDSPTLPESSATDMGYYSS-HHEYYQSP---PYPQQMNSYHQFNLSGMGATpGAYPTKT-EYPYNT-YRQYGHYNRDLQT 101
Cdd:pfam12413   1 QDSPTLPESSATDSGYYSPqQQHYYGSCagqPYGQPLNSYQYFNLNGMNGT-GAYSTKAyEYGYNTsYRQYGAYGRSQSP 79


                  ...
gi 56118498   102 PPQ 104
Cdd:pfam12413  80 PPQ 82
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
121-185 2.03e-10

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 57.83  E-value: 2.03e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 56118498 121 KPKKIRKprtiySSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYK 185
Cdd:COG5576  52 KSKRRRT-----TDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRS 111
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
126-182 1.36e-27

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 100.65  E-value: 1.36e-27
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 56118498   126 RKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKK 182
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 126-181 1.58e-23

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 90.00  E-value: 1.58e-23
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 56118498    126 RKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFK 181
Cdd:smart00389   2 RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 126-182 3.74e-22

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 86.53  E-value: 3.74e-22
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 56118498 126 RKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKK 182
Cdd:cd00086   1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKR 57
DLL_N pfam12413
Homeobox protein distal-less-like N terminal; This domain family is found in eukaryotes, and ...
 28-104 2.45e-19

Homeobox protein distal-less-like N terminal; This domain family is found in eukaryotes, and is approximately 80 amino acids in length. The family is found in association with pfam00046. This family is the N terminal of a homeobox protein involved in embryonic development and adult neural regeneration.


Pssm-ID: 463567  Cd Length: 83  Bit Score: 80.17  E-value: 2.45e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56118498    28 KDSPTLPESSATDMGYYSS-HHEYYQSP---PYPQQMNSYHQFNLSGMGATpGAYPTKT-EYPYNT-YRQYGHYNRDLQT 101
Cdd:pfam12413   1 QDSPTLPESSATDSGYYSPqQQHYYGSCagqPYGQPLNSYQYFNLNGMNGT-GAYSTKAyEYGYNTsYRQYGAYGRSQSP 79


                  ...
gi 56118498   102 PPQ 104
Cdd:pfam12413  80 PPQ 82
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
121-185 2.03e-10

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 57.83  E-value: 2.03e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 56118498 121 KPKKIRKprtiySSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYK 185
Cdd:COG5576  52 KSKRRRT-----TDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRS 111
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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