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Conserved domains on  [gi|18858793|ref|NP_571155|]
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hairy-related 3 [Danio rerio]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
bHLH_SF super family cl00081
basic Helix Loop Helix (bHLH) domain superfamily; bHLH proteins are transcriptional regulators ...
24-78 4.10e-27

basic Helix Loop Helix (bHLH) domain superfamily; bHLH proteins are transcriptional regulators that are found in organisms from yeast to humans. Members of the bHLH superfamily have two highly conserved and functionally distinct regions. The basic part is at the amino end of the bHLH that may bind DNA to a consensus hexanucleotide sequence known as the E box (CANNTG). Different families of bHLH proteins recognize different E-box consensus sequences. At the carboxyl-terminal end of the region is the HLH region that interacts with other proteins to form homo- and heterodimers. bHLH proteins function as a diverse set of regulatory factors because they recognize different DNA sequences and dimerize with different proteins. The bHLH proteins can be divided to cell-type specific and widely expressed proteins. The cell-type specific members of bHLH superfamily are involved in cell-fate determination and act in neurogenesis, cardiogenesis, myogenesis, and hematopoiesis.


The actual alignment was detected with superfamily member cd18933:

Pssm-ID: 469605 [Multi-domain]  Cd Length: 55  Bit Score: 98.50  E-value: 4.10e-27
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 18858793  24 MEKKRRARINKCLNQLKSLLESACSNNIRKRKLEKADILELTVKHLRHLQNTKRG 78
Cdd:cd18933   1 MEKKRRARINVSLEQLKSLLEKHYSNNIRKRKLEKADILELTVKYLRSLQNSIQG 55
ORANGE smart00511
Orange domain; This domain confers specificity among members of the Hairy/E(SPL) family.
88-129 2.18e-08

Orange domain; This domain confers specificity among members of the Hairy/E(SPL) family.


:

Pssm-ID: 128787  Cd Length: 45  Bit Score: 48.71  E-value: 2.18e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 18858793     88 YHAGYRSCLNTVSHYLRA-SDTDRDSRSIMLTNLTSGLNHNRV 129
Cdd:smart00511   3 FRSGYRECANEVSRFLSQlPGTDPDVRARLLSHLQTHLNQLLQ 45
 
Name Accession Description Interval E-value
bHLH-O_HES3 cd18933
basic helix-loop-helix-orange (bHLH-O) domain found in transcription factor HES-3 and similar ...
24-78 4.10e-27

basic helix-loop-helix-orange (bHLH-O) domain found in transcription factor HES-3 and similar proteins; HES-3, also termed Class B basic helix-loop-helix protein 43 (bHLHb43), or hairy and enhancer of split 3, is a bHLH-O transcription factor expressed in neural stem and progenitor cells that is involved in tissue regeneration. It regulates gene expression, cell growth, and insulin release. HES-3 is one mammalian counterpart of the Hairy and Enhancer of split proteins that play a critical role in many physiological processes including cellular differentiation, cell cycle arrest, apoptosis and self-renewal ability.


Pssm-ID: 381503 [Multi-domain]  Cd Length: 55  Bit Score: 98.50  E-value: 4.10e-27
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 18858793  24 MEKKRRARINKCLNQLKSLLESACSNNIRKRKLEKADILELTVKHLRHLQNTKRG 78
Cdd:cd18933   1 MEKKRRARINVSLEQLKSLLEKHYSNNIRKRKLEKADILELTVKYLRSLQNSIQG 55
HLH pfam00010
Helix-loop-helix DNA-binding domain;
17-73 4.69e-13

Helix-loop-helix DNA-binding domain;


Pssm-ID: 459628 [Multi-domain]  Cd Length: 53  Bit Score: 61.71  E-value: 4.69e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 18858793    17 KKVSKPLMEKKRRARINKCLNQLKSLLESACSNnirkRKLEKADILELTVKHLRHLQ 73
Cdd:pfam00010   1 RREAHNERERRRRDRINDAFDELRELLPTLPPD----KKLSKAEILRLAIEYIKHLQ 53
HLH smart00353
helix loop helix domain;
22-74 1.13e-10

helix loop helix domain;


Pssm-ID: 197674 [Multi-domain]  Cd Length: 53  Bit Score: 55.30  E-value: 1.13e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 18858793     22 PLMEKKRRARINKCLNQLKSLLESACSNnirkRKLEKADILELTVKHLRHLQN 74
Cdd:smart00353   1 NARERRRRRKINEAFDELRSLLPTLPKN----KKLSKAEILRLAIEYIKSLQE 49
ORANGE smart00511
Orange domain; This domain confers specificity among members of the Hairy/E(SPL) family.
88-129 2.18e-08

Orange domain; This domain confers specificity among members of the Hairy/E(SPL) family.


Pssm-ID: 128787  Cd Length: 45  Bit Score: 48.71  E-value: 2.18e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 18858793     88 YHAGYRSCLNTVSHYLRA-SDTDRDSRSIMLTNLTSGLNHNRV 129
Cdd:smart00511   3 FRSGYRECANEVSRFLSQlPGTDPDVRARLLSHLQTHLNQLLQ 45
 
Name Accession Description Interval E-value
bHLH-O_HES3 cd18933
basic helix-loop-helix-orange (bHLH-O) domain found in transcription factor HES-3 and similar ...
24-78 4.10e-27

basic helix-loop-helix-orange (bHLH-O) domain found in transcription factor HES-3 and similar proteins; HES-3, also termed Class B basic helix-loop-helix protein 43 (bHLHb43), or hairy and enhancer of split 3, is a bHLH-O transcription factor expressed in neural stem and progenitor cells that is involved in tissue regeneration. It regulates gene expression, cell growth, and insulin release. HES-3 is one mammalian counterpart of the Hairy and Enhancer of split proteins that play a critical role in many physiological processes including cellular differentiation, cell cycle arrest, apoptosis and self-renewal ability.


Pssm-ID: 381503 [Multi-domain]  Cd Length: 55  Bit Score: 98.50  E-value: 4.10e-27
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 18858793  24 MEKKRRARINKCLNQLKSLLESACSNNIRKRKLEKADILELTVKHLRHLQNTKRG 78
Cdd:cd18933   1 MEKKRRARINVSLEQLKSLLEKHYSNNIRKRKLEKADILELTVKYLRSLQNSIQG 55
bHLH_O_HES cd11410
basic helix-loop-helix-orange (bHLH-O) domain found in hairy and enhancer of split (HES) ...
24-76 1.25e-21

basic helix-loop-helix-orange (bHLH-O) domain found in hairy and enhancer of split (HES) family; The HES family includes bHLH-O transcriptional regulators that are related to the Drosophila hairy and Enhancer-of-split (HES) proteins. They contain a basic helix-loop-helix (bHLH) domain with an invariant proline residue in its basic region, an orange domain in the central region and a conserved tetrapeptide motif, WRPW, at its C-terminal region. HES family proteins form heterodimers or homodimers via their HLH domain and bind DNA to repress gene transcription that play an essential role in development of both compartment and boundary cells of the central nervous system.


Pssm-ID: 381416 [Multi-domain]  Cd Length: 54  Bit Score: 84.06  E-value: 1.25e-21
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 18858793  24 MEKKRRARINKCLNQLKSL-LESACSNNIRKRKLEKADILELTVKHLRHLQNTK 76
Cdd:cd11410   1 MEKKRRARINKSLEQLKTLvLEALNKDNTRYSKLEKADILEMTVKYLKQLQRSK 54
bHLH-O_hairy_like cd18913
basic helix-loop-helix-orange (bHLH-O) domain found in Drosophila melanogaster protein hairy, ...
17-73 1.75e-18

basic helix-loop-helix-orange (bHLH-O) domain found in Drosophila melanogaster protein hairy, protein deadpan and similar proteins; Protein hairy is a bHLH transcriptional repressor of genes that require a bHLH-O protein for their transcription. It acts as a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. Protein deadpan is closely related to the product of the segmentation gene hairy. It is a direct target of Notch signaling and regulates neuroblast self-renewal in Drosophila.


Pssm-ID: 381483 [Multi-domain]  Cd Length: 67  Bit Score: 76.43  E-value: 1.75e-18
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 18858793  17 KKVSKPLMEKKRRARINKCLNQLKSL-LESACSNNIRKRKLEKADILELTVKHLRHLQ 73
Cdd:cd18913   3 RKSSKPIMEKRRRARINASLNELKSLlLDALKKDGTRHSKLEKADILEMTVKHLRQVQ 60
bHLH-O_ESMB_like cd19741
basic helix-loop-helix-orange (bHLH-O) domain found in Drosophila melanogaster enhancer of ...
12-77 4.14e-18

basic helix-loop-helix-orange (bHLH-O) domain found in Drosophila melanogaster enhancer of split mbeta protein (ESMB) and similar proteins; ESMB, also termed E(spl)mbeta, or HLH-mbeta, or split locus enhancer protein mA, is a bHLH-O transcriptional repressor of genes that require a bHLH protein for their transcription. It is involved in the neural-epidermal lineage decision during early neurogenesis. The family also includes Enhancer of split m7 protein (also known as E(spl)m7), which acts as a transcriptional repressor that participates in the control of cell fate choice by uncommitted neuroectodermal cells in the embryo.


Pssm-ID: 381584 [Multi-domain]  Cd Length: 69  Bit Score: 75.50  E-value: 4.14e-18
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 18858793  12 KPQNVKKVSKPLMEKKRRARINKCLNQLKSLLESACSNNIRKR-KLEKADILELTVKHLRHLQNTKR 77
Cdd:cd19741   3 KTYQYRKVTKPLLERKRRARINKCLDELKDLMVEALATEAENVsKLEKADILELTVRHLKKLRRQKS 69
bHLH-O_HES1_4 cd11459
basic helix-loop-helix-orange (bHLH-O) domain found in hairy and enhancer of split HES-1, ...
17-73 2.71e-17

basic helix-loop-helix-orange (bHLH-O) domain found in hairy and enhancer of split HES-1, HES-4 and similar proteins; The family includes two bHLH-O transcriptional repressors, HES-1 and HES-4. HES-1, also termed Class B basic helix-loop-helix protein 39 (bHLHb39), or hairy homolog, or hairy-like protein (HL), plays an essential role in development of both compartment and boundary cells of the central nervous system. It regulates the maintenance of neural stem/progenitor cells by inhibiting proneural gene expression via Notch signaling. HES-4, also termed Class B basic helix-loop-helix protein 42 (bHLHb42), or bHLH factor Hes4, antagonizes the function of Twist-1 to regulate lineage commitment of bone marrow stromal/stem cells (BMSC). Epigenetic dysregulation of HES-4 is associated with striatal degeneration in postmortem Huntington brains. Both HES-1 and HES-4 are mammalian counterparts of the Hairy and Enhancer of split proteins that play a critical role in many physiological processes including cellular differentiation, cell cycle arrest, apoptosis and self-renewal ability.


Pssm-ID: 381465 [Multi-domain]  Cd Length: 63  Bit Score: 73.25  E-value: 2.71e-17
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 18858793  17 KKVSKPLMEKKRRARINKCLNQLKSL-LESACSNNIRKRKLEKADILELTVKHLRHLQ 73
Cdd:cd11459   3 RKSSKPIMEKRRRARINESLSQLKTLiLDALKKDSSRHSKLEKADILEMTVKHLRNLQ 60
bHLH-O_HERP_like cd11389
basic helix-loop-helix-orange (bHLH-O) domain found in hairy and enhancer of split (HES) ...
23-73 3.84e-14

basic helix-loop-helix-orange (bHLH-O) domain found in hairy and enhancer of split (HES)-related repressor protein (HERP)-like family; The HERP-like family includes bHLH-O transcriptional regulators that are related to the Drosophila hairy and Enhancer-of-split proteins. They contain a basic helix-loop-helix (bHLH) domain with an invariant glycine residue in its basic region, an orange domain in the central region and YXXW sequence motif at its C-terminal region. HERP proteins (HEY1, HEY2 and HEYL) act as downstream effectors of Notch signaling. They are involved in cardiovascular development and have roles in somitogenesis, myogenesis and gliogenesis. Hairy and enhancer of split-related protein HELT is a transcriptional repressor expressed in the developing central nervous system. It binds preferentially to the canonical E box sequence 5'-CACGCG-3' and regulates neuronal differentiation and/or identity. Differentially expressed in chondrocytes proteins, DEC1 and DEC2, are widely expressed in both embryonic and adult tissues and have been implicated in apoptosis, cell proliferation, and circadian rhythms, as well as malignancy in various cancers. Drosophila melanogaster protein clockwork orange (Cwo) is also included in this family. It is involved in the regulation of Drosophila circadian rhythms. It functions as both an activator and a repressor of clock gene expression.


Pssm-ID: 381395 [Multi-domain]  Cd Length: 55  Bit Score: 64.65  E-value: 3.84e-14
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 18858793  23 LMEKKRRARINKCLNQLKSLLeSACSNNIRKRKLEKADILELTVKHLRHLQ 73
Cdd:cd11389   3 VIEKRRRDRINESLAELRRLV-PEARKSKGSGKLEKAEILEMTLQHLKALQ 52
bHLH-O_HES2 cd11463
basic helix-loop-helix-orange (bHLH-O) domain found in hairy and enhancer of split 2 (HES-2) ...
16-72 9.80e-14

basic helix-loop-helix-orange (bHLH-O) domain found in hairy and enhancer of split 2 (HES-2) and similar proteins; HES-2, also termed Class B basic helix-loop-helix protein 40 (bHLHb40), is a bHLH-O transcriptional repressor of genes that require a bHLH protein for their transcription. It acts as a negative regulator through interaction with both E-box and N-box sequences. HES-2 is one mammalian counterpart of the Hairy and Enhancer of split proteins that play a critical role in many physiological processes including cellular differentiation, cell cycle arrest, apoptosis and self-renewal ability.


Pssm-ID: 381469 [Multi-domain]  Cd Length: 65  Bit Score: 63.77  E-value: 9.80e-14
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 18858793  16 VKKVSKPLMEKKRRARINKCLNQLKSL-LESACSNNIRKRKLEKADILELTVKHLRHL 72
Cdd:cd11463   4 LRKTLKPLMEKRRRARINESLNQLKTLiLPLVGKDSSRYSKLEKADILEMTVRFLQDL 61
bHLH-O_HES5 cd11461
basic helix-loop-helix-orange (bHLH-O) domain found in transcription factor HES-5 and similar ...
18-71 2.99e-13

basic helix-loop-helix-orange (bHLH-O) domain found in transcription factor HES-5 and similar proteins; HES-5, also termed Class B basic helix-loop-helix protein 38 (bHLHb38), or hairy and enhancer of split 5, is a bHLH-O transcription factor that is involved in cell differentiation and proliferation in a variety of tissues. HES-5 is an essential effector for Notch signaling. It acts as a transducer of Notch signals in brain vascular development. It also acts as a key mediator of Wnt-3a-induced neuronal differentiation and plays a crucial role in normal inner ear hair cell development. HES-5 is one mammalian counterpart of the Hairy and Enhancer of split proteins that play a critical role in many physiological processes including cellular differentiation, cell cycle arrest, apoptosis and self-renewal ability.


Pssm-ID: 381467 [Multi-domain]  Cd Length: 59  Bit Score: 62.36  E-value: 2.99e-13
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 18858793  18 KVSKPLMEKKRRARINKCLNQLKSLLESACSNNIRKRKLEKADILELTVKHLRH 71
Cdd:cd11461   1 KLRKPVVEKTRRDRINSSIEQLKTLLEKEFQRHQPNSKLEKADILEMTVSFLKQ 54
bHLH-O_HES7 cd11462
basic helix-loop-helix-orange (bHLH-O) domain found in hairy and enhancer of split 7 (HES-7) ...
17-70 4.11e-13

basic helix-loop-helix-orange (bHLH-O) domain found in hairy and enhancer of split 7 (HES-7) and similar proteins; HES-7, also termed Class B basic helix-loop-helix protein 37 (bHLHb37), or bHLH factor Hes7, is a bHLH-O transcriptional repressor that is expressed in an oscillatory manner and acts as a key regulator of the pace of the segmentation clock. It is regulated by the Notch and Fgf/Mapk pathways. HES-7 is one mammalian counterpart of the Hairy and Enhancer of split proteins that play a critical role in many physiological processes including cellular differentiation, cell cycle arrest, apoptosis and self-renewal ability.


Pssm-ID: 381468 [Multi-domain]  Cd Length: 61  Bit Score: 61.98  E-value: 4.11e-13
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 18858793  17 KKVSKPLMEKKRRARINKCLNQLKS-LLESACSNNIRKRKLEKADILELTVKHLR 70
Cdd:cd11462   1 RKLLKPLVEKRRRDRINRSLEELRVlLLQNTQDEKLKNPKVEKAEILELTVQFLR 55
HLH pfam00010
Helix-loop-helix DNA-binding domain;
17-73 4.69e-13

Helix-loop-helix DNA-binding domain;


Pssm-ID: 459628 [Multi-domain]  Cd Length: 53  Bit Score: 61.71  E-value: 4.69e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 18858793    17 KKVSKPLMEKKRRARINKCLNQLKSLLESACSNnirkRKLEKADILELTVKHLRHLQ 73
Cdd:pfam00010   1 RREAHNERERRRRDRINDAFDELRELLPTLPPD----KKLSKAEILRLAIEYIKHLQ 53
bHLH-O_HERP_HES cd19685
basic helix-loop-helix-orange (bHLH-O) domain found in HERP/HES-like family; The HERP/HES-like ...
24-73 7.52e-12

basic helix-loop-helix-orange (bHLH-O) domain found in HERP/HES-like family; The HERP/HES-like family includes bHLH-O transcriptional regulators that are related to the Drosophila hairy and Enhancer-of-split (HES) proteins. The HERP (HES-related repressor protein) subfamily proteins contain a basic helix-loop-helix (bHLH) domain with an invariant glycine residue in its basic region, an orange domain in the central region and YXXW sequence motif at its C-terminal region. Hairy and enhancer of split (HES)-related repressor protein (HERP) proteins (HEY1, HEY2 and HEYL) act as downstream effectors of Notch signaling. They are involved in cardiovascular development and have roles in somitogenesis, myogenesis and gliogenesis. Hairy and enhancer of split-related protein HELT is a transcriptional repressor expressed in the developing central nervous system. It binds preferentially to the canonical E box sequence 5'-CACGCG-3' and regulates neuronal differentiation and/or identity. Differentially expressed in chondrocytes proteins, DEC1 and DEC2, are widely expressed in both embryonic and adult tissues and have been implicated in apoptosis, cell proliferation, and circadian rhythms, as well as malignancy in various cancers. Drosophila melanogaster protein clockwork orange (Cwo) is also included in this subfamily. It is involved in the regulation of Drosophila circadian rhythms. It functions as both an activator and a repressor of clock gene expression. The HES subfamily proteins contain a basic helix-loop-helix (bHLH) domain with an invariant proline residue in its basic region, an orange domain in the central region and a conserved tetrapeptide motif, WRPW, at its C-terminal region. They form heterodimers or homodimers via their HLH domain and bind DNA to repress gene transcription that play an essential role in development of both compartment and boundary cells of the central nervous system.


Pssm-ID: 381528 [Multi-domain]  Cd Length: 52  Bit Score: 58.59  E-value: 7.52e-12
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 18858793  24 MEKKRRARINKCLNQLKSLLESACSNNiRKRKLEKADILELTVKHLRHLQ 73
Cdd:cd19685   1 SEKRRRQRINDKLNQLKELLPPNLSKQ-SRSKLSKAEILEMAITELRRLQ 49
bHLH-O_HERP cd11407
basic helix-loop-helix-orange (bHLH-O) domain found in hairy and enhancer of split (HES) ...
17-75 9.52e-11

basic helix-loop-helix-orange (bHLH-O) domain found in hairy and enhancer of split (HES)-related repressor protein (HERP) family; HERP (also called Hey/Hesr/HRT/CHF/gridlock) proteins corresponds to a family of bHLH-O transcriptional repressors that are related to the Drosophila hairy and Enhancer-of-split proteins and act as downstream effectors of Notch signaling. They contain a basic helix-loop-helix (bHLH) domain with an invariant glycine residue in its basic region, an orange domain in the central region and YXXW sequence motif at its C-terminal region. HERP proteins are involved in cardiovascular development and have roles in somitogenesis, myogenesis and gliogenesis.


Pssm-ID: 381413 [Multi-domain]  Cd Length: 59  Bit Score: 55.51  E-value: 9.52e-11
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 18858793  17 KKVSKPLMEKKRRARINKCLNQLKSLLESAcsnnIRKR---KLEKADILELTVKHLRHLQNT 75
Cdd:cd11407   1 RKKRRGIIEKRRRDRINNSLAELRRLVPTA----FEKQgsaKLEKAEILQMTVDHLKMLHSK 58
HLH smart00353
helix loop helix domain;
22-74 1.13e-10

helix loop helix domain;


Pssm-ID: 197674 [Multi-domain]  Cd Length: 53  Bit Score: 55.30  E-value: 1.13e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 18858793     22 PLMEKKRRARINKCLNQLKSLLESACSNnirkRKLEKADILELTVKHLRHLQN 74
Cdd:smart00353   1 NARERRRRRKINEAFDELRSLLPTLPKN----KKLSKAEILRLAIEYIKSLQE 49
bHLH-O_ESM5_like cd18916
basic helix-loop-helix-orange (bHLH-O) domain found in Drosophila melanogaster Enhancer of ...
18-77 1.22e-10

basic helix-loop-helix-orange (bHLH-O) domain found in Drosophila melanogaster Enhancer of split proteins, E(spl)m5, E(spl)m8 and similar proteins; The family includes two bHLH-O transcriptional repressors, E(spl)m5 and E(spl)m8, which participate in the control of cell fate choice by uncommitted neuroectodermal cells in the embryo. They bind DNA on N-box motifs, 5'-CACNAG-3'.


Pssm-ID: 381486 [Multi-domain]  Cd Length: 59  Bit Score: 55.23  E-value: 1.22e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858793  18 KVSKPLMEKKRRARINKCLNQLKSLLESACSNNIRKRkLEKADILELTVKHLRHlQNTKR 77
Cdd:cd18916   1 KSKKPMLERQRRARINKCLSELKTLVAECSGDDGCLR-MDKAEMLETAVAFMRQ-QQTAK 58
bHLH-O_HELT cd11408
basic helix-loop-helix-orange (bHLH-O) domain found in hairy and enhancer of split-related ...
20-75 9.46e-10

basic helix-loop-helix-orange (bHLH-O) domain found in hairy and enhancer of split-related protein HELT and similar proteins; HELT, also termed HES/HEY-like transcription factor, is a bHLH-O transcriptional repressor expressed in the developing central nervous system. It binds preferentially to the canonical E box sequence 5'-CACGCG-3' and regulates neuronal differentiation and/or identity. HELT could homodimerize and heterodimerize with other bHLH-O protein such as HES-5 or HEY-2 and bound to E box to repress gene transcription.


Pssm-ID: 381414 [Multi-domain]  Cd Length: 56  Bit Score: 53.07  E-value: 9.46e-10
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 18858793  20 SKPLMEKKRRARINKCLNQLKSLLESACSNNiRKRKLEKADILELTVKHLRHLQNT 75
Cdd:cd11408   1 SHKVIEKRRRDRINRCLNELGKTVPMALAKQ-TSGKLEKAEILEMTVQYLRALHSA 55
ORANGE smart00511
Orange domain; This domain confers specificity among members of the Hairy/E(SPL) family.
88-129 2.18e-08

Orange domain; This domain confers specificity among members of the Hairy/E(SPL) family.


Pssm-ID: 128787  Cd Length: 45  Bit Score: 48.71  E-value: 2.18e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 18858793     88 YHAGYRSCLNTVSHYLRA-SDTDRDSRSIMLTNLTSGLNHNRV 129
Cdd:smart00511   3 FRSGYRECANEVSRFLSQlPGTDPDVRARLLSHLQTHLNQLLQ 45
bHLH-O_DEC cd11409
basic helix-loop-helix-orange (bHLH-O) domain found in differentially expressed in ...
18-74 3.30e-08

basic helix-loop-helix-orange (bHLH-O) domain found in differentially expressed in chondrocytes protein (DEC) family; The DEC family includes two bHLH-O transcriptional repressors, DEC1 and DEC2, which are widely expressed in both embryonic and adult tissues and have been implicated in apoptosis, cell proliferation, and circadian rhythms, as well as malignancy in various cancers. They mediate the circadian rhythm by negatively regulating the activity of the clock genes and clock-controlled genes. They are induced by CLOCK:BMAL1 heterodimer via the CACGTG E-box in the promoter.


Pssm-ID: 381415 [Multi-domain]  Cd Length: 75  Bit Score: 49.27  E-value: 3.30e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 18858793  18 KVSKPLMEKKRRARINKCLNQLKSLLESACSNNIRKRkLEKADILELTVKHLRHLQN 74
Cdd:cd11409   5 KLPHRLIEKKRRDRINECIAQLKDLLPEHLKLTTLGH-LEKAVVLELTLKHLKALTA 60
bHLH-O_HES6 cd11460
basic helix-loop-helix-orange (bHLH-O) domain found in transcription factor HES-6 and similar ...
17-70 1.11e-07

basic helix-loop-helix-orange (bHLH-O) domain found in transcription factor HES-6 and similar proteins; HES-6, also termed Class B basic helix-loop-helix protein 41 (bHLHb41), or hairy and enhancer of split 6, or C-HAIRY1, is a bHLH-O transcription factor that is expressed in developing muscle and involved in angiogenesis, myogenesis, neural differentiation and neurogenesis. HES-6 antagonizes Notch signaling but is not regulated by Notch signaling. It is a transcription co-factor associated with stem cell characteristics in neural tissue. It may act as an inhibitor of Hes-1 during neuronal development and forms a heterodimer with HES-1 to prevent its association with transcriptional co-repressors. The overexpression of HES-6 has been reported in metastatic cancers of different origins. HES-6 is one mammalian counterpart of the Hairy and Enhancer of split proteins that play a critical role in many physiological processes including cellular differentiation, cell cycle arrest, apoptosis and self-renewal ability.


Pssm-ID: 381466 [Multi-domain]  Cd Length: 58  Bit Score: 47.22  E-value: 1.11e-07
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 18858793  17 KKVSKPLMEKKRRARINKCLNQLKSLLESACSnnirKRKLEKADILELTVKHLR 70
Cdd:cd11460   3 RKARKPLVEKKRRARINESLQELRLILADAEL----QSKMENAEVLELTVKRVQ 52
bHLH_SOHLH1_2 cd18908
basic helix-loop-helix (bHLH) domain found in the spermatogenesis- and oogenesis-specific ...
25-73 1.43e-07

basic helix-loop-helix (bHLH) domain found in the spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein (SOHLH) family; The SOHLH family includes two bHLH transcription factors, SOHLH1 and SOHLH2. They are specifically in spermatogonia and oocytes and essential for early spermatogonial and oocyte differentiation.


Pssm-ID: 381478 [Multi-domain]  Cd Length: 59  Bit Score: 46.95  E-value: 1.43e-07
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 18858793  25 EKKRRARINKCLNQLKSLLEsacsnNIRKRKLEKADILELTVKHLRHLQ 73
Cdd:cd18908  10 ERLRRERIKSSCDQLRDLLP-----YIKGRKLDMASVLEMTVKYIRYIQ 53
bHLH-O_HEYL cd11447
basic helix-loop-helix-orange (bHLH-O) domain found in hairy/enhancer-of-split related with ...
17-75 1.46e-07

basic helix-loop-helix-orange (bHLH-O) domain found in hairy/enhancer-of-split related with YRPW motif-like protein (HEYL) and similar proteins; HEYL, also termed Class B basic helix-loop-helix protein 33 (bHLHb33), or hairy-related transcription factor 3 (HRT-3), is a bHLH-O transcriptional repressor that is strongly expressed in the presomitic mesoderm, the somites, the peripheral nervous system and smooth muscle of all arteries and is a downstream effector of the Notch and transforming growth factor-beta pathways. It promotes neuronal differentiation by activating proneural genes and inhibiting other hairy and enhancer of split (HES) and hairy/enhancer-of-split related with YRPW motif protein (HEY) proteins. HEYL also functions as a tumor suppressor involved in the progression of human cancers.


Pssm-ID: 381453 [Multi-domain]  Cd Length: 74  Bit Score: 47.40  E-value: 1.46e-07
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 18858793  17 KKVSKPLMEKKRRARINKCLNQLKSLLESACSNNiRKRKLEKADILELTVKHLRHLQNT 75
Cdd:cd11447   9 RKKRRGIIEKRRRDRINSSLSELRRLVPTAFEKQ-GSSKLEKAEILQMTVDHLKMLHAT 66
bHLH-O_DEC2 cd19750
basic helix-loop-helix-orange (bHLH-O) domain found in differentially expressed in ...
18-72 1.67e-07

basic helix-loop-helix-orange (bHLH-O) domain found in differentially expressed in chondrocytes protein 2 (DEC2) and similar proteins; DEC2, also termed Class E basic helix-loop-helix protein 41 (bHLHe41), or Class B basic helix-loop-helix protein 3 (bHLHb3), or enhancer-of-split and hairy-related protein 1 (SHARP-1), is a bHLH-O transcriptional repressor involved in the regulation of the circadian rhythm by negatively regulating the activity of the clock genes and clock-controlled genes.


Pssm-ID: 381593  Cd Length: 92  Bit Score: 47.68  E-value: 1.67e-07
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 18858793  18 KVSKPLMEKKRRARINKCLNQLKSLLESACSNNIRKRkLEKADILELTVKHLRHL 72
Cdd:cd19750  16 KLPHRLIEKKRRDRINECIAQLKDLLPEHLKLTTLGH-LEKAVVLELTLKHLKAL 69
bHLH-O_DEC1 cd19749
basic helix-loop-helix-orange (bHLH-O) domain found in differentially expressed in ...
18-74 2.11e-07

basic helix-loop-helix-orange (bHLH-O) domain found in differentially expressed in chondrocytes protein 1 (DEC1) and similar proteins; DEC1, also termed Class E basic helix-loop-helix protein 40 (bHLHe40), or Class B basic helix-loop-helix protein 2 (bHLHb2), or enhancer-of-split and hairy-related protein 2 (SHARP-2), or stimulated by retinoic acid gene 13 protein (STRA13), is a bHLH-O transcriptional repressor involved in the regulation of the circadian rhythm by negatively regulating the activity of the clock genes and clock-controlled genes.


Pssm-ID: 381592  Cd Length: 90  Bit Score: 47.28  E-value: 2.11e-07
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 18858793  18 KVSKPLMEKKRRARINKCLNQLKSLLESACSNNIRKRkLEKADILELTVKHLRHLQN 74
Cdd:cd19749  15 KLPHRLIEKKRRDRINECIAQLKDLLPEHLKLTTLGH-LEKAVVLELTLKHVKALTS 70
bHLH-O_HEY2 cd18920
basic helix-loop-helix-orange (bHLH-O) domain found in hairy/enhancer-of-split related with ...
17-75 3.76e-07

basic helix-loop-helix-orange (bHLH-O) domain found in hairy/enhancer-of-split related with YRPW motif protein 2 (HEY2) and similar proteins; HEY2, also termed cardiovascular helix-loop-helix factor 1 (CHF-1), or Class B basic helix-loop-helix protein 32 (bHLHb32), or HES-related repressor protein 2, or hairy and enhancer of split-related protein 2 (HESR-2), or hairy-related transcription factor 2 (HRT-2), or protein gridlock homolog, is a bHLH-O transcriptional repressor expressed preferentially in the developing and adult cardiovascular system. As a downstream effector of Notch signaling, HEY2 may be required for cardiovascular development. It also plays an important role in neurologic development, as well as in the progression of human cancers.


Pssm-ID: 381490 [Multi-domain]  Cd Length: 82  Bit Score: 46.67  E-value: 3.76e-07
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 18858793  17 KKVSKPLMEKKRRARINKCLNQLKSLLESACSNNiRKRKLEKADILELTVKHLRHLQNT 75
Cdd:cd18920  10 RKKRRGIIEKRRRDRINNSLSELRRLVPTAFEKQ-GSAKLEKAEILQMTVDHLKMLQAT 67
bHLH-O_HEY1 cd19748
basic helix-loop-helix-orange (bHLH-O) domain found in hairy/enhancer-of-split related with ...
17-73 4.40e-07

basic helix-loop-helix-orange (bHLH-O) domain found in hairy/enhancer-of-split related with YRPW motif protein 1 (HEY1) and similar proteins; HEY1, also termed cardiovascular helix-loop-helix factor 2 (CHF-2), or Class B basic helix-loop-helix protein 31 (bHLHb31), or HES-related repressor protein 1, or hairy and enhancer of split-related protein 1 (HESR-1), or hairy-related transcription factor 1 (HRT-1), is a bHLH-O transcriptional repressor that acts as an essential downstream effector of the Notch signaling pathway and may play a fundamental role in vascular development. HEY1 also participates several cancer-related pathways. It acts as a positive regulator of the tumor suppressor p53.


Pssm-ID: 381591 [Multi-domain]  Cd Length: 71  Bit Score: 46.10  E-value: 4.40e-07
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 18858793  17 KKVSKPLMEKKRRARINKCLNQLKSLLESACSNNiRKRKLEKADILELTVKHLRHLQ 73
Cdd:cd19748   9 RKRRRGIIEKRRRDRINNSLSELRRLVPSAFEKQ-GSAKLEKAEILQMTVDHLKMLH 64
bHLH_SF cd00083
basic Helix Loop Helix (bHLH) domain superfamily; bHLH proteins are transcriptional regulators ...
25-73 5.80e-07

basic Helix Loop Helix (bHLH) domain superfamily; bHLH proteins are transcriptional regulators that are found in organisms from yeast to humans. Members of the bHLH superfamily have two highly conserved and functionally distinct regions. The basic part is at the amino end of the bHLH that may bind DNA to a consensus hexanucleotide sequence known as the E box (CANNTG). Different families of bHLH proteins recognize different E-box consensus sequences. At the carboxyl-terminal end of the region is the HLH region that interacts with other proteins to form homo- and heterodimers. bHLH proteins function as a diverse set of regulatory factors because they recognize different DNA sequences and dimerize with different proteins. The bHLH proteins can be divided to cell-type specific and widely expressed proteins. The cell-type specific members of bHLH superfamily are involved in cell-fate determination and act in neurogenesis, cardiogenesis, myogenesis, and hematopoiesis.


Pssm-ID: 381392 [Multi-domain]  Cd Length: 46  Bit Score: 44.82  E-value: 5.80e-07
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 18858793  25 EKKRRARINKCLNQLKSLLeSACSNnirKRKLEKADILELTVKHLRHLQ 73
Cdd:cd00083   1 ERRRRDKINDAFEELKRLL-PELPD---SKKLSKASILQKAVEYIRELQ 45
bHLH-O_Cwo_like cd11440
basic helix-loop-helix-orange (bHLH-O) domain found in Drosophila melanogaster protein ...
20-74 8.52e-07

basic helix-loop-helix-orange (bHLH-O) domain found in Drosophila melanogaster protein clockwork orange (Cwo) and similar proteins; Cwo is a bHLH-O transcriptional regulator involved in the regulation of Drosophila circadian rhythms. It functions as both an activator and a repressor of clock gene expression.


Pssm-ID: 381446 [Multi-domain]  Cd Length: 60  Bit Score: 44.78  E-value: 8.52e-07
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 18858793  20 SKPLMEKKRRARINKCLNQLKSLLESACSNNIRKRkLEKADILELTVKHLRHLQN 74
Cdd:cd11440   5 SHRIIEKRRRDRMNNCLADLSRLIPPTYLKKGRGR-IEKTEIIEMAIKHIKHLQQ 58
bHLHzip_MLXIP_like cd11405
basic Helix-Loop-Helix-zipper (bHLHzip) domain found in MLX-interacting protein (MLXIP), ...
25-74 1.42e-04

basic Helix-Loop-Helix-zipper (bHLHzip) domain found in MLX-interacting protein (MLXIP), MLX-interacting protein-like (MLXIPL) and similar proteins; The family includes MLXIP and MLXIPL. MLXIP, also termed Class E basic helix-loop-helix protein 36 (bHLHe36), or transcriptional activator MondoA, is a bHLHZip transcriptional activator that binds DNA as a heterodimer with Mlx. It binds to the canonical E box sequence 5'-CACGTG-3' and plays a role in transcriptional activation of glycolytic target genes. MLXIP is most highly expressed in skeletal muscle and functions as an indirect glucose sensor, by sensing glucose 6-phosphate and shuttling between the nucleus and the cytoplasm. MLXIPL, also termed carbohydrate-responsive element-binding protein (ChREBP), or Class D basic helix-loop-helix protein 14 (bHLHd14), or MLX interactor, or WS basic-helix-loop-helix leucine zipper protein (WS-bHLH), or Williams-Beuren syndrome chromosomal region 14 protein (WBSCR14), is a bHLHZip transcriptional factor integral to the regulation of glycolysis and lipogenesis in the liver. It forms heterodimers with the bHLHZip protein Mlx to bind the DNA sequence 5'-CACGTG-3'.


Pssm-ID: 381411 [Multi-domain]  Cd Length: 74  Bit Score: 39.18  E-value: 1.42e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 18858793  25 EKKRRARINKCLNQLKSLLESacSNNIRKRKLEKADILELTVKHLRHLQN 74
Cdd:cd11405  11 EQKRRFNIKSGFDTLQSLIPS--LGQNPNQKVSKAAMLQKAAEYIKSLKR 58
bHLHzip_USF_MITF cd11387
basic Helix-Loop-Helix-zipper (bHLHzip) domain found in USF/MITF family; The USF (upstream ...
25-75 1.53e-04

basic Helix-Loop-Helix-zipper (bHLHzip) domain found in USF/MITF family; The USF (upstream stimulatory factor)/MITF (microphthalmia-associated transcription factor) family includes two bHLHzip transcription factor subfamilies. USFs are ubiquitously expressed and key regulators of a wide number of gene regulation networks, including the stress and immune responses, cell cycle and proliferation, lipid and glucid metabolism. USFs recruit chromatin remodeling enzymes and interact with co-activators and the members of the transcription pre-initiation complex. USFs interact with high affinity to E-box regulatory elements. The MITF (also known as microphthalmia-TFE, or MiT) subfamily comprises four genes in mammals (MITF, TFE3, TFEB, and TFEC); each gene has different functions. MITF is involved in neural crest melanocytes development as well as the pigmented retinal epithelium. TFEB is required for vascularization of the mouse placenta. TFE3 is involved in B cell function. TFEC regulates gene expression in macrophages. The MITF subfamily proteins can form homodimers or heterodimers with each other but not with other bHLH or bHLHzip proteins.


Pssm-ID: 381393 [Multi-domain]  Cd Length: 58  Bit Score: 38.77  E-value: 1.53e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 18858793  25 EKKRRARINKCLNQLKSLLeSACSNNIRKRKLEKADILELTVKHLRHLQNT 75
Cdd:cd11387   6 ERRRRDNINEKIQELGSLV-PPSRLETKDLKPNKGSILSKAVEYIRELQNQ 55
bHLH_SOHLH_like cd19683
basic helix-loop-helix (bHLH) domain found in the spermatogenesis- and oogenesis-specific ...
24-73 2.92e-04

basic helix-loop-helix (bHLH) domain found in the spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein (SOHLH) family and similar proteins; The SOHLH family includes two bHLH transcription factors, SOHLH1 and SOHLH2. They are specifically in spermatogonia and oocytes and essential for early spermatogonial and oocyte differentiation. The family also includes transcription factor-like 5 protein (TCFL5) and similar proteins. TCFL5, also termed Cha transcription factor, or HPV-16 E2-binding protein 1 (E2BP-1), is a bHLH transcription factor that plays a crucial role in spermatogenesis. It regulates cell proliferation or differentiation of cells through binding to a specific DNA sequence like other bHLH molecules.


Pssm-ID: 381526  Cd Length: 58  Bit Score: 37.72  E-value: 2.92e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 18858793  24 MEKKRRARINKCLNQLKSLLeSACSnnirkRKLEKADILELTVKHLRHLQ 73
Cdd:cd19683   9 KERQRRERIKIACDQLRKLV-PGCS-----RKTDKATVFEFTVAYIKFLR 52
bHLH_AtAIG1_like cd11455
basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein AIG1 and similar ...
25-75 4.31e-04

basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein AIG1 and similar proteins; AIG1, also termed AtbHLH32, or EN 54, or protein target of MOOPTEROS 5, is a transcription factor required for MONOPTEROS-dependent root initiation in embryo.


Pssm-ID: 381461  Cd Length: 80  Bit Score: 38.04  E-value: 4.31e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 18858793  25 EKKRRARINKCLNQLKSLLESACsnnirkrKLEKADILELTVKHLRHLQNT 75
Cdd:cd11455  15 ERRRRERINSHLATLRTLLPNLS-------KTDKASLLAEVVQHVKELKRQ 58
bHLH-PAS_CLOCK_like cd11441
basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output ...
18-71 9.37e-04

basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins; The family includes CLOCK, neuronal PAS domain-containing protein 2 (NPAS2) and non-mammalian circadian clock protein PASD1. CLOCK, also termed Class E basic helix-loop-helix protein 8 (bHLHe8), is a transcriptional activator which forms a core component of the circadian clock. NPAS2, also termed neuronal PAS2, or basic-helix-loop-helix-PAS protein MOP4, or Class E basic helix-loop-helix protein 9 (bHLHe9), or member of PAS protein 4, or PAS domain-containing protein 4, is a transcriptional activator which forms a core component of the circadian clock. PASD1 is evolutionarily related to Circadian locomotor output cycles protein kaput (CLOCK)and functions as a suppressor of the biological clock that drives the daily circadian rhythms of cells throughout the body.


Pssm-ID: 381447  Cd Length: 54  Bit Score: 36.18  E-value: 9.37e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 18858793  18 KVSKPLMEKKRRARINKCLNQLKSLLESacsnniRKRKLEKADILELTVKHLRH 71
Cdd:cd11441   1 RKSRNLSEKKRRDQFNVLINELASMLPG------RGRKMDKSTVLKKTIAFLRK 48
bHLH-PAS_ARNT_like cd11437
basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor ...
25-75 2.32e-03

basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) family; The ARNT family of bHLH-PAS transcription regulators includes ARNT, ARNT-like proteins (ARNTL and ARNTL2), and Drosophila melanogaster protein cycle. They act as the heterodimeric partner for bHLH-PAS proteins such as aryl hydrocarbon receptor (AhR), hypoxia-inducible factor (HIF), and single-minded (SIM). These bHLH-PAS transcription complexes are involved in transcriptional responses to xenobiotic, hypoxia, and developmental pathways. Heterodimerization of bHLH-PAS proteins with ARNT is mediated by contacts between both the bHLH and the tandem PAS domains. ARNT use bHLH and/or PAS domains to interact with several transcriptional coactivators. It is required for activity of the aryl hydrocarbon (dioxin) receptor. ARNTL, also termed Basic-helix-loop-helix-PAS protein MOP3, or brain and muscle ARNT-like 1 (BMAL1), or Class E basic helix-loop-helix protein 5 (bHLHe5), or member of PAS protein 3, or PAS domain-containing protein 3 (PASD3), or bHLH-PAS protein JAP3, is a member of the bHLH-PAS transcription factor family that forms heterodimers with another bHLH-PAS protein, CLOCK (circadian locomotor output cycle kaput), which regulates circadian rhythm. ARNTL-CLOCK heterodimer complex activates transcription from E-box (CANNTG) elements found in the promoter of circadian responsive genes. ARNTL is highly homologous to ARNT. ARNTL2, also termed Basic-helix-loop-helix-PAS protein MOP9, or brain and muscle ARNT-like 2 (BMAL2), or CYCLE-like factor (CLIF), or Class E basic helix-loop-helix protein 6 (bHLHe6), or member of PAS protein 9, or PAS domain-containing protein 9 (PASD9), is a neuronal bHLH-PAS transcriptional factor, regulating cell cycle progression and preventing cell death, whose sustained expression might ensure brain neuron survival. It also plays important roles in tumor angiogenesis. Protein cycle, also termed brain and muscle ARNT-like 1 (BMAL1), or MOP3, is a putative bHLH-PAS transcription factor involved in the generation of biological rhythms in Drosophila. It activates cycling transcription of Period (PER) and Timeless (TIM) by binding to the E-box (5'-CACGTG-3') present in their promoters.


Pssm-ID: 381443  Cd Length: 58  Bit Score: 35.47  E-value: 2.32e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 18858793  25 EKKRRARINKCLNQLKSLLeSACsnNIRKRKLEKADILELTVKHLRHLQNT 75
Cdd:cd11437   9 EKRRRDKMNAYIQELSALV-PAC--NAMSRKLDKLTVLRMAVQHLKSLRGT 56
bHLHzip_SREBP_like cd11395
basic Helix-Loop-Helix-zipper (bHLHzip) domain found in sterol regulatory element-binding ...
16-86 3.48e-03

basic Helix-Loop-Helix-zipper (bHLHzip) domain found in sterol regulatory element-binding protein (SREBP) family and similar proteins; The SREBP family includes SREBP1 and SREBP2, which are bHLHzip transcriptional activator of genes encoding proteins essential for cholesterol biosynthesis/uptake and fatty acid biosynthesis. SREBP1 and SREBP2 are principally found in the liver and in adipocytes and made up of an N-terminal transcription factor portion (composed of an activation domain, a bHLHzip domain, and a nuclear localization signal), a hydrophobic region containing two membrane spanning regions, and a C-terminal regulatory segment. They recognize a symmetric sterol regulatory element (TCACNCCAC) instead of E-box. The family also includes Saccharomyces cerevisiae transcription factor HMS1 (also termed high-copy MEP suppressor protein 1) and serine-rich protein TYE7. HMS1 is a putative bHLHzip transcription factor involved in exit from mitosis and pseudohyphal differentiation. TYE7, also termed basic-helix-loop-helix protein SGC1, is a putative bHLHzip transcription activator required for Ty1-mediated glycolytic gene expression. TYE7 N-terminal is extremely rich in serine residues. It binds DNA on E-box motifs, 5'-CANNTG-3'. TYE7 is not essential for growth.


Pssm-ID: 381401 [Multi-domain]  Cd Length: 87  Bit Score: 35.39  E-value: 3.48e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858793  16 VKKVSKPLMEKKRRARINKCLNQLKSLLESACS-----------NNIRKRKLEKADILELTVKHLRHLQNTKRGLSKACD 84
Cdd:cd11395   2 RKRLPHNAIEKRYRSNLNTKIERLRDAIPSLRSpegksddgglgGLAPTTKLSKATILTKAIEYIRHLEQENERLEEENE 81

                ..
gi 18858793  85 SA 86
Cdd:cd11395  82 EL 83
bHLH-PAS_dCLOCK cd19735
basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Drosophila melanogaster ...
15-71 4.15e-03

basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Drosophila melanogaster Circadian locomotor output cycles protein kaput (dCLOCK) and similar proteins; dCLOCK, also termed dPAS1, is a bHLH-PAS Circadian regulator that acts as a transcription factor and generates a rhythmic output with a period of about 24 hours.


Pssm-ID: 381578  Cd Length: 80  Bit Score: 35.16  E-value: 4.15e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 18858793  15 NVKKVSKPLMEKKRRARINKCLNQLKSLLesaCSNNirkRKLEKADILELTVKHLRH 71
Cdd:cd19735   8 TIKRKSRNLSEKKRRDQFNVLINELCSMV---STSN---RKMDKSTVLKSTIAFLKN 58
bHLH_PAS cd11391
basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain family; bHLH-PAS domain has been found ...
25-70 4.21e-03

basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain family; bHLH-PAS domain has been found in a large group of bHLH transcription regulators that are involved in gene expression responding to environmental change and controlling aspects of neural development, including proteins from aryl hydrocarbon receptor nuclear translocator (ARNT) family, hypoxia-inducible factor (HIF) family, aryl hydrocarbon receptor (AhR) family, neuronal PAS domain-containing protein (NPAS) family, Circadian locomotor output cycles protein kaput (CLOCK)-like family, and single-minded (SIM) family. bHLH-PAS transcriptional regulatory factors have a bHLH DNA-binding domain followed by two PAS domains and a C-terminal activation or repression domain. bHLH-PAS family members can be divided into class I and class II based on their dimerization partner. bHLH-PAS class I factors include AhR, HIF and SIM. The best characterized bHLH-PAS Class II protein is the ubiquitous ARNT. Some members of bHLH-PAS family act as transcriptional coactivators (such as NCoA) that lack the ability to dimerize and bind DNA.


Pssm-ID: 381397 [Multi-domain]  Cd Length: 55  Bit Score: 34.48  E-value: 4.21e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 18858793  25 EKKRRARINKCLNQLKSLLESACSnniRKRKLEKADILELTVKHLR 70
Cdd:cd11391   8 AKKRRDKENAEISELASLLPLPPA---VGSKLDKLSVLRLAVAYLR 50
bHLH-PAS_ARNTL_PASD3 cd11438
basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor ...
24-73 4.28e-03

basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins; ARNTL, also termed Basic-helix-loop-helix-PAS protein MOP3, or brain and muscle ARNT-like 1 (BMAL1), or Class E basic helix-loop-helix protein 5 (bHLHe5), or member of PAS protein 3, or PAS domain-containing protein 3 (PASD3), or bHLH-PAS protein JAP3, is a member of the bHLH-PAS transcription factor family that forms heterodimers with another bHLH-PAS protein, CLOCK (circadian locomotor output cycle kaput), which regulates circadian rhythm. ARNTL-CLOCK heterodimer complex activates transcription from E-box (CANNTG) elements found in the promoter of circadian responsive genes. ARNTL is highly homologous to ARNT.


Pssm-ID: 381444  Cd Length: 64  Bit Score: 34.70  E-value: 4.28e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 18858793  24 MEKKRRARINKCLNQLKSLLESAcsnNIRKRKLEKADILELTVKHLRHLQ 73
Cdd:cd11438  14 IEKRRRDKMNSFIDELASLVPTC---NAMSRKLDKLTVLRMAVQHMKTLR 60
bHLHzip_MITF_like cd11397
basic Helix-Loop-Helix-zipper (bHLHzip) domain found in the microphthalmia-associated ...
17-74 4.85e-03

basic Helix-Loop-Helix-zipper (bHLHzip) domain found in the microphthalmia-associated transcription factor family (MITF) family; The MITF (also known as microphthalmia-TFE, or MiT) family is a small family that contain a basic helix loop helix domain associated with a leucine zipper (bHLHZip). The MITF family comprises four genes in mammals (MITF, TFE3, TFEB, and TFEC); each gene has different functions. MITF is involved in neural crest melanocytes development as well as the pigmented retinal epithelium. TFEB is required for vascularization of the mouse placenta. TFE3 is involved in B cell function. TFEC regulates gene expression in macrophages. The MITF family can form homodimers or heterodimers with each other but not with other bHLH or bHLHzip proteins.


Pssm-ID: 381403  Cd Length: 69  Bit Score: 34.58  E-value: 4.85e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 18858793  17 KKVSKPLMEKKRRARINKCLNQLKSLLESACSNNIRkrkLEKADILELTVKHLRHLQN 74
Cdd:cd11397   5 KKDNHNMIERRRRFNINDRIKELGTLLPKSNDPDMR---WNKGTILKASVDYIRKLQK 59
bHLH_AtbHLH_like cd11393
basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription ...
25-74 5.10e-03

basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins; bHLH proteins are the second largest class of plant transcription factors that regulate transcription of genes that are involve in many essential physiological and developmental process. bHLH proteins are transcriptional regulators that are found in organisms from yeast to humans. The Arabidopsis bHLH proteins that have been characterized so far have roles in regulation of fruit dehiscence, cell development (carpel, anther and epidermal), phytochrome signaling, flavonoid biosynthesis, hormone signaling and stress responses.


Pssm-ID: 381399 [Multi-domain]  Cd Length: 53  Bit Score: 34.08  E-value: 5.10e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 18858793  25 EKKRRARINKCLNQLKSLLESAcsnnirkRKLEKADILELTVKHLRHLQN 74
Cdd:cd11393   5 ERKRREKINERIRALRSLVPNG-------GKTDKASILDEAIEYIKFLQE 47
bHLHzip_USF cd11396
basic Helix-Loop-Helix-zipper (bHLHzip) domain found in upstream stimulatory factors, USF1, ...
25-74 5.21e-03

basic Helix-Loop-Helix-zipper (bHLHzip) domain found in upstream stimulatory factors, USF1, USF2 and similar proteins; Upstream stimulatory factor 1 and 2 (USF-1 and USF-2) are members of bHLHzip transcription factor family. USFs are ubiquitously expressed and key regulators of a wide number of gene regulation networks, including the stress and immune responses, cell cycle and proliferation, lipid and glucid metabolism. USFs recruit chromatin remodeling enzymes and interact with co-activators and the members of the transcription pre-initiation complex. USFs interact with high affinity to E-box regulatory elements.


Pssm-ID: 381402  Cd Length: 58  Bit Score: 34.19  E-value: 5.21e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 18858793  25 EKKRRARINKCLNQLKSLLESaCSNNIRKRKLEKADILELTVKHLRHLQN 74
Cdd:cd11396   6 ERRRRDKINNWIVKLAKIVPD-CEKDNSKQGQSKGGILSKACDYIQELRS 54
bHLH_ScPHO4_like cd11392
basic helix-loop-helix (bHLH) domain found in Saccharomyces cerevisiae phosphate system ...
17-75 7.99e-03

basic helix-loop-helix (bHLH) domain found in Saccharomyces cerevisiae phosphate system positive regulatory protein PHO4 and similar proteins; PHO4 is a transcriptional activator that regulates the expression of repressible phosphatase under phosphate starvation conditions in Saccharomyces cerevisiae. The PHO4 protein has four functional domains with the bHLH domain at its carboxyl-terminal region. It regulates transcription by binding to promoter of the genes as a homodimer.


Pssm-ID: 381398  Cd Length: 80  Bit Score: 34.35  E-value: 7.99e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18858793  17 KKVSKPLMEKKRRARINKCLNQLKSLLESAC-------------SNNIRKRKLE----KADILELTVKHLRHLQNT 75
Cdd:cd11392   2 KRTAHKVAERGRRDRLNAALKELASLMPAEFvegkmgadgsasdSNDKEKAAASaagsKAATVEMAIDYIKHLQKE 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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