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Conserved domains on  [gi|18415051|ref|NP_568160|]
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Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Arabidopsis thaliana]

Protein Classification

protease inhibitor/seed storage/LTP family protein( domain architecture ID 10028580)

Protease inhibitor/seed storage/LTP family protein belongs to a protein family that is unique to higher plants and includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, among others

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AAI_LTSS cd00010
AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein ...
 41-101 2.03e-09

AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.


:

Pssm-ID: 237980  Cd Length: 63  Bit Score: 49.73  E-value: 2.03e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 18415051  41 LAPCAMAAQDTSAKVSAICCARVKQMGQ-NPKCLCAVMLSSTARSSGAK-PEISMTIPKRCNI 101
Cdd:cd00010   1 LAPCLSYLTGGATAPPSDCCSGLKSVVKsDPKCLCAALNGPGASLLGLKnATRALALPAACGL 63
 
Name Accession Description Interval E-value
AAI_LTSS cd00010
AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein ...
 41-101 2.03e-09

AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.


Pssm-ID: 237980  Cd Length: 63  Bit Score: 49.73  E-value: 2.03e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 18415051  41 LAPCAMAAQDTSAKVSAICCARVKQMGQ-NPKCLCAVMLSSTARSSGAK-PEISMTIPKRCNI 101
Cdd:cd00010   1 LAPCLSYLTGGATAPPSDCCSGLKSVVKsDPKCLCAALNGPGASLLGLKnATRALALPAACGL 63
Tryp_alpha_amyl pfam00234
Protease inhibitor/seed storage/LTP family; This family is composed of trypsin-alpha amylase ...
 40-110 4.23e-04

Protease inhibitor/seed storage/LTP family; This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants.


Pssm-ID: 425543  Cd Length: 74  Bit Score: 36.39  E-value: 4.23e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18415051    40 KLAPCAMAAQDTSAKVSAICCARVKQMgqNPKCLCAVMLSSTARSSGAKPEISMTIPKRCNIaNRPVGYKC 110
Cdd:pfam00234   7 CLAPCLGYLQGGCQVPSQQCCSQLRQL--QAQCRCTAIRAIVLGIEGINPQAAASLPSMCGV-NVPYGIDC 74
 
Name Accession Description Interval E-value
AAI_LTSS cd00010
AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein ...
 41-101 2.03e-09

AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.


Pssm-ID: 237980  Cd Length: 63  Bit Score: 49.73  E-value: 2.03e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 18415051  41 LAPCAMAAQDTSAKVSAICCARVKQMGQ-NPKCLCAVMLSSTARSSGAK-PEISMTIPKRCNI 101
Cdd:cd00010   1 LAPCLSYLTGGATAPPSDCCSGLKSVVKsDPKCLCAALNGPGASLLGLKnATRALALPAACGL 63
Tryp_alpha_amyl pfam00234
Protease inhibitor/seed storage/LTP family; This family is composed of trypsin-alpha amylase ...
 40-110 4.23e-04

Protease inhibitor/seed storage/LTP family; This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants.


Pssm-ID: 425543  Cd Length: 74  Bit Score: 36.39  E-value: 4.23e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18415051    40 KLAPCAMAAQDTSAKVSAICCARVKQMgqNPKCLCAVMLSSTARSSGAKPEISMTIPKRCNIaNRPVGYKC 110
Cdd:pfam00234   7 CLAPCLGYLQGGCQVPSQQCCSQLRQL--QAQCRCTAIRAIVLGIEGINPQAAASLPSMCGV-NVPYGIDC 74
LTP_2 pfam14368
Probable lipid transfer; The members of this family are probably involved in lipid transfer. ...
 40-110 3.27e-03

Probable lipid transfer; The members of this family are probably involved in lipid transfer. The family has several highly conserved cysteines, paired in various ways.


Pssm-ID: 433909  Cd Length: 100  Bit Score: 34.38  E-value: 3.27e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 18415051    40 KLAPCA--MAAQDTSAKVSAICCARVKQ-MGQNPKCLCAVMLSSTARSSGAKPEISMTIPKRCNIANRPVGyKC 110
Cdd:pfam14368  28 GLSPCLpyLTGTPAATAPSPACCGALKSaVSTDVTCLCALVTAPLPIGFPINVTRALALPRACGVKTPPSS-KC 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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