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Conserved domains on  [gi|18417181|ref|NP_567806|]
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early nodulin-like protein 3 [Arabidopsis thaliana]

Protein Classification

early nodulin-like family protein( domain architecture ID 10181143)

early nodulin-like family protein belongs to the phytocyanin-like group of blue copper proteins from the cupredoxin superfamily, and may be involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OsENODL1_like cd11019
Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early ...
 27-127 2.29e-52

Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early nodulin-like protein (OsENODL1) from Oryza sativa and similar proteins. It belongs to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Phytocyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. OsENODL1 expression occurs specifically at the late developmental stage of the seeds. Members of this subgroup appear to have lost the T1 copper binding site.


:

Pssm-ID: 259905  Cd Length: 103  Bit Score: 163.21  E-value: 2.29e-52
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18417181  27 YKFYVGGKDGWV--PTPSEDYSHWSHRNRFQVNDTLHFKYAKGKDSVLEVTEQEYNTCNTTHPLTSLSDGDSLFLLSHSG 104
Cdd:cd11019   1 REFKVGGKDGWKvpPSASESYNQWAERNRFQVGDSLVFKYDKGNDSVLEVTKEDYDSCNTSSPIARFNDGNTKFTLDRSG 80

                        90       100
                ....*....|....*....|...
gi 18417181 105 SYFFISGNSQNCLKGQKLAVKVL 127
Cdd:cd11019  81 PFYFISGAPGHCEKGQKLIVVVM 103
 
Name Accession Description Interval E-value
OsENODL1_like cd11019
Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early ...
 27-127 2.29e-52

Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early nodulin-like protein (OsENODL1) from Oryza sativa and similar proteins. It belongs to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Phytocyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. OsENODL1 expression occurs specifically at the late developmental stage of the seeds. Members of this subgroup appear to have lost the T1 copper binding site.


Pssm-ID: 259905  Cd Length: 103  Bit Score: 163.21  E-value: 2.29e-52
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18417181  27 YKFYVGGKDGWV--PTPSEDYSHWSHRNRFQVNDTLHFKYAKGKDSVLEVTEQEYNTCNTTHPLTSLSDGDSLFLLSHSG 104
Cdd:cd11019   1 REFKVGGKDGWKvpPSASESYNQWAERNRFQVGDSLVFKYDKGNDSVLEVTKEDYDSCNTSSPIARFNDGNTKFTLDRSG 80

                        90       100
                ....*....|....*....|...
gi 18417181 105 SYFFISGNSQNCLKGQKLAVKVL 127
Cdd:cd11019  81 PFYFISGAPGHCEKGQKLIVVVM 103
Cu_bind_like pfam02298
Plastocyanin-like domain; This family represents a domain found in flowering plants related to ...
 37-120 2.08e-22

Plastocyanin-like domain; This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues.


Pssm-ID: 280462  Cd Length: 84  Bit Score: 86.25  E-value: 2.08e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18417181    37 WVPTPSEDYSHWSHRNRFQVNDTLHFKYAKGKDSVLEVTEQEYNTCNTTHPLTSLSDGDSLFLLSHSGSYFFISGNSQNC 116
Cdd:pfam02298   1 WTVNAESDYTTWAQGKTFRVGDTLVFKYDSDFHNVVEVTKADYESCDTSKPIRNYTTGSDKVTLTKPGPNYFICGVPGHC 80


                  ....
gi 18417181   117 LKGQ 120
Cdd:pfam02298  81 KFGM 84
PLN03148 PLN03148
Blue copper-like protein; Provisional
 11-198 2.50e-17

Blue copper-like protein; Provisional


Pssm-ID: 178693  Cd Length: 167  Bit Score: 75.30  E-value: 2.50e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18417181   11 LMFVMLMGLGFTISNGYKFYVGGKDGWvpTPSEDYSHWSHRNRFQVNDTLHFKYAKGKDSVLEVTEQEYNTCNTTHPLTS 90
Cdd:PLN03148   5 LLFCFFALFSASATTATDHIVGANKGW--NPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGN 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18417181   91 LSDGDSLFLLSHSGSYFFISGNSQnCLKGQKLAVkvlsTVHhshsprhtsPSPSPVHQELSSPGPSPGvepssdsnsrvp 170
Cdd:PLN03148  83 WTSGKDFIPLNKAKRYYFICGNGQ-CFNGMKVTI----LVH---------PLPPPPSHTAAANGAKSH------------ 136

                        170       180
                 ....*....|....*....|....*...
gi 18417181  171 apGPATAPNSAGLVgpGMVVLVIMISSL 198
Cdd:PLN03148 137 --SAAPAAFHKGLV--ALRGLVLWMASI 160
 
Name Accession Description Interval E-value
OsENODL1_like cd11019
Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early ...
 27-127 2.29e-52

Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early nodulin-like protein (OsENODL1) from Oryza sativa and similar proteins. It belongs to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Phytocyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. OsENODL1 expression occurs specifically at the late developmental stage of the seeds. Members of this subgroup appear to have lost the T1 copper binding site.


Pssm-ID: 259905  Cd Length: 103  Bit Score: 163.21  E-value: 2.29e-52
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18417181  27 YKFYVGGKDGWV--PTPSEDYSHWSHRNRFQVNDTLHFKYAKGKDSVLEVTEQEYNTCNTTHPLTSLSDGDSLFLLSHSG 104
Cdd:cd11019   1 REFKVGGKDGWKvpPSASESYNQWAERNRFQVGDSLVFKYDKGNDSVLEVTKEDYDSCNTSSPIARFNDGNTKFTLDRSG 80

                        90       100
                ....*....|....*....|...
gi 18417181 105 SYFFISGNSQNCLKGQKLAVKVL 127
Cdd:cd11019  81 PFYFISGAPGHCEKGQKLIVVVM 103
Phytocyanin cd04216
Phytocyanins are plant blue or type I copper proteins; Phytocyanins are plant blue or type I ...
 31-126 2.97e-33

Phytocyanins are plant blue or type I copper proteins; Phytocyanins are plant blue or type I copper proteins. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. Phytocyanins are classified into four groups: stellacyanin, plantacyanin, uclacyanin and early nodulin groups. Stellacyanin appears to be associated with the plant cell wall; it may be involved in oxidative reactions to build polymeric material making up the cell wall. Plantacyanin is shown to play a role in reproduction in Arabidopsis. Plantacyanins may also be stress-related proteins and may be involved in plant defense responses. The early nodulin-like protein (OsENODL1) from Oryza sativa is expressed specifically at the late developmental stage of the seeds.


Pssm-ID: 259878 [Multi-domain]  Cd Length: 98  Bit Score: 114.66  E-value: 2.97e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18417181  31 VGGKDGWvpTPSEDYSHWSHRNRFQVNDTLHFKYAKGKDSVLEVTEQEYNTCNTTHPLTSLSDGDSLFLLSHSGSYFFIS 110
Cdd:cd04216   5 VGDSNGW--DLPVNYTAWASGKTFRVGDSLVFNYNAGAHSVVEVNEADYDSCDTSNPINTYTSGNDSVTLTKPGTRYFIC 82

                        90
                ....*....|....*.
gi 18417181 111 GNSQNCLKGQKLAVKV 126
Cdd:cd04216  83 GVPGHCQSGMKLAINV 98
Mavicyanin cd11014
Mavicyanin is a subclass of phytocyanins, a plant blue copper protein; Mavicyanin is a ...
 31-127 9.87e-23

Mavicyanin is a subclass of phytocyanins, a plant blue copper protein; Mavicyanin is a glycosylated protein isolated from Cucurbita pepo medullosa (zucchini) peelings. It belongs to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Mavicyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. The copper is tetrahedrally coordinated by a cysteine, 2 histidines, and a glutamine residue, like in the case of stellacyanin. The biological roles of mavicyanin have not been elucidated yet.


Pssm-ID: 259900  Cd Length: 101  Bit Score: 87.45  E-value: 9.87e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18417181  31 VGGKDGWVPTPSEDYSHWSHRNRFQVNDTLHFKYAKGKDSVLEVTEQEYNTCNTTHPLTSLSDGDSLFLLSHSGSYFFIS 110
Cdd:cd11014   5 VGDSDGWTVYDSDYYYKWSSSKTFHVGDSLIFQYNKEFHDVTEVTGEEFESCNSTSPIAVYNTGHDIIKLTKPGQYYFIC 84

                        90
                ....*....|....*..
gi 18417181 111 GNSQNCLKGQKLAVKVL 127
Cdd:cd11014  85 GVPGHCDSGQKLQVNVT 101
Cu_bind_like pfam02298
Plastocyanin-like domain; This family represents a domain found in flowering plants related to ...
 37-120 2.08e-22

Plastocyanin-like domain; This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues.


Pssm-ID: 280462  Cd Length: 84  Bit Score: 86.25  E-value: 2.08e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18417181    37 WVPTPSEDYSHWSHRNRFQVNDTLHFKYAKGKDSVLEVTEQEYNTCNTTHPLTSLSDGDSLFLLSHSGSYFFISGNSQNC 116
Cdd:pfam02298   1 WTVNAESDYTTWAQGKTFRVGDTLVFKYDSDFHNVVEVTKADYESCDTSKPIRNYTTGSDKVTLTKPGPNYFICGVPGHC 80


                  ....
gi 18417181   117 LKGQ 120
Cdd:pfam02298  81 KFGM 84
Stellacyanin cd13920
Stellacyanin is a subclass of phytocyanins, a plant type I copper protein; Stellacyanin is a ...
 28-126 1.08e-21

Stellacyanin is a subclass of phytocyanins, a plant type I copper protein; Stellacyanin is a subclass of the phytocyanins, a ubiquitous family of plant cupredoxins. Stellacyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. The copper is tetrahedrally coordinated by a cysteine, 2 histidines, and a glutamine residue. The glutamine residue substitutes for a methione ligand typically found in other blue copper proteins. The exact function of stellacyanin is unknown. However, stellacyanin appears to be associated with the plant cell wall; it may be involved in oxidative reactions to build polymeric material making up the cell wall.


Pssm-ID: 259987 [Multi-domain]  Cd Length: 101  Bit Score: 85.06  E-value: 1.08e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18417181  28 KFYVGGKDGW-VPTPSEDYSHWSHRNRFQVNDTLHFKYAKGKDSVLEVTEQEYNTCNTTHPLTSLSDGDSLFLLSHSGSY 106
Cdd:cd13920   2 DHIVGGSLGWsIPPNASFYTDWAANRTFRVGDSLVFNFEAGVHNVVEVSKEEYDNCTTTNPIKVFTTGPVIITLNETGTR 81

                        90       100
                ....*....|....*....|
gi 18417181 107 FFISGNSQNCLKGQKLAVKV 126
Cdd:cd13920  82 YFICTVGNHCSLGQKVSINV 101
Phytocyanin_like_1 cd11017
A subclass of phytocyanins, plant blue or type I copper proteins; Phytocyanins are plant blue ...
 28-126 1.16e-17

A subclass of phytocyanins, plant blue or type I copper proteins; Phytocyanins are plant blue or type I copper proteins. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. Phytocyanins are classified into four groups: stellacyanin, plantacyanin, uclacyanin and early nodulin groups. Members of this unknown subgroup appear to have lost the T1 copper binding site.


Pssm-ID: 259903  Cd Length: 99  Bit Score: 74.35  E-value: 1.16e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18417181  28 KFYVGGKD-GWvpTPSEDYSHWSHRNRFQVNDTLHFKYAKGKDSVLEVTEQEYNTCNTTHPLTSLSDGDS-LFLLSHSGS 105
Cdd:cd11017   2 LHTVGGNRiGW--NPNINYTDWAKMHGFYSGDWLVFRYQRGRHNVVQVNETGYDNCDASNPISNYSSGGRdIFQLNETKR 79

                        90       100
                ....*....|....*....|.
gi 18417181 106 YFFISGNSqNCLKGQKLAVKV 126
Cdd:cd11017  80 YYFICGRG-YCYGGMKLAITV 99
PLN03148 PLN03148
Blue copper-like protein; Provisional
 11-198 2.50e-17

Blue copper-like protein; Provisional


Pssm-ID: 178693  Cd Length: 167  Bit Score: 75.30  E-value: 2.50e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18417181   11 LMFVMLMGLGFTISNGYKFYVGGKDGWvpTPSEDYSHWSHRNRFQVNDTLHFKYAKGKDSVLEVTEQEYNTCNTTHPLTS 90
Cdd:PLN03148   5 LLFCFFALFSASATTATDHIVGANKGW--NPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGN 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18417181   91 LSDGDSLFLLSHSGSYFFISGNSQnCLKGQKLAVkvlsTVHhshsprhtsPSPSPVHQELSSPGPSPGvepssdsnsrvp 170
Cdd:PLN03148  83 WTSGKDFIPLNKAKRYYFICGNGQ-CFNGMKVTI----LVH---------PLPPPPSHTAAANGAKSH------------ 136

                        170       180
                 ....*....|....*....|....*...
gi 18417181  171 apGPATAPNSAGLVgpGMVVLVIMISSL 198
Cdd:PLN03148 137 --SAAPAAFHKGLV--ALRGLVLWMASI 160
Plantacyanin cd11013
Plantacyanin is a subclass of phytocyanins, plant type I copper proteins; Plantacyanins belong ...
 29-126 3.17e-10

Plantacyanin is a subclass of phytocyanins, plant type I copper proteins; Plantacyanins belong to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Plantacyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. The exact function of plantacyanin is unknown. However plantacyanin is shown to play a role in reproduction in Arabidopsis. Plantacyanins may also be stress-related proteins and be involved in plant defense responses.


Pssm-ID: 259899  Cd Length: 95  Bit Score: 54.67  E-value: 3.17e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18417181  29 FYVGGKDGWVP-TPSedyshWSHRNRFQVNDTLHFKYAKGKDSVLEVTEQEYNTCNTTHPLTSLSDGDSLFLLShSGSYF 107
Cdd:cd11013   3 YVVGDSIGWTFgVVG-----WPNGKTFRAGDVLVFNYDPSAHNVVVVDEGGYRTCKAPPGAIVYTSGDDKITLP-KGVNY 76

                        90
                ....*....|....*....
gi 18417181 108 FISGNSQNCLKGQKLAVKV 126
Cdd:cd11013  77 FICSFPGHCTSGMKIAVTA 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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