FLOWERING WAGENINGEN [Arabidopsis thaliana]
SRPBCC family protein; homeobox-leucine zipper family START domain-containing protein( domain architecture ID 11078710)
SRPBCC (START/RHOalphaC/PITP/Bet v1/CoxG/CalC) family protein may have a deep hydrophobic ligand-binding pocket| homeobox-leucine zipper family START (steroidogenic acute regulatory protein (StAR)-related lipid transfer) domain-containing protein may bind lipids
List of domain hits
Name | Accession | Description | Interval | E-value | ||||
START_ArGLABRA2_like | cd08875 | C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related ... |
211-435 | 2.10e-98 | ||||
C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins; This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells. : Pssm-ID: 176884 Cd Length: 229 Bit Score: 301.88 E-value: 2.10e-98
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Homeodomain | pfam00046 | Homeodomain; |
40-96 | 1.87e-17 | ||||
Homeodomain; : Pssm-ID: 459649 [Multi-domain] Cd Length: 57 Bit Score: 76.38 E-value: 1.87e-17
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SRPBCC super family | cl14643 | START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily; SRPBCC ... |
479-632 | 7.44e-03 | ||||
START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily; SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. The actual alignment was detected with superfamily member cd00177: Pssm-ID: 472699 [Multi-domain] Cd Length: 193 Bit Score: 38.09 E-value: 7.44e-03
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Name | Accession | Description | Interval | E-value | ||||
START_ArGLABRA2_like | cd08875 | C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related ... |
211-435 | 2.10e-98 | ||||
C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins; This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells. Pssm-ID: 176884 Cd Length: 229 Bit Score: 301.88 E-value: 2.10e-98
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START | pfam01852 | START domain; |
216-436 | 1.48e-59 | ||||
START domain; Pssm-ID: 426476 Cd Length: 205 Bit Score: 199.17 E-value: 1.48e-59
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START | smart00234 | in StAR and phosphatidylcholine transfer protein; putative lipid-binding domain in StAR and ... |
216-436 | 8.45e-53 | ||||
in StAR and phosphatidylcholine transfer protein; putative lipid-binding domain in StAR and phosphatidylcholine transfer protein Pssm-ID: 214575 Cd Length: 205 Bit Score: 180.71 E-value: 8.45e-53
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Homeodomain | pfam00046 | Homeodomain; |
40-96 | 1.87e-17 | ||||
Homeodomain; Pssm-ID: 459649 [Multi-domain] Cd Length: 57 Bit Score: 76.38 E-value: 1.87e-17
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homeodomain | cd00086 | Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ... |
42-99 | 2.27e-16 | ||||
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner. Pssm-ID: 238039 [Multi-domain] Cd Length: 59 Bit Score: 73.43 E-value: 2.27e-16
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HOX | smart00389 | Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ... |
39-92 | 2.56e-15 | ||||
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes Pssm-ID: 197696 [Multi-domain] Cd Length: 57 Bit Score: 70.36 E-value: 2.56e-15
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COG5576 | COG5576 | Homeodomain-containing transcription factor [Transcription]; |
25-138 | 9.55e-10 | ||||
Homeodomain-containing transcription factor [Transcription]; Pssm-ID: 227863 [Multi-domain] Cd Length: 156 Bit Score: 57.83 E-value: 9.55e-10
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START | cd00177 | Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins; This family ... |
479-632 | 7.44e-03 | ||||
Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins; This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular processes including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, and autoimmune disease. The Arabidopsis homeobox protein GLABRA 2 suppresses root hair formation in hairless epidermal root cells. Pssm-ID: 176851 [Multi-domain] Cd Length: 193 Bit Score: 38.09 E-value: 7.44e-03
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Name | Accession | Description | Interval | E-value | ||||
START_ArGLABRA2_like | cd08875 | C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related ... |
211-435 | 2.10e-98 | ||||
C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins; This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells. Pssm-ID: 176884 Cd Length: 229 Bit Score: 301.88 E-value: 2.10e-98
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START | pfam01852 | START domain; |
216-436 | 1.48e-59 | ||||
START domain; Pssm-ID: 426476 Cd Length: 205 Bit Score: 199.17 E-value: 1.48e-59
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START | smart00234 | in StAR and phosphatidylcholine transfer protein; putative lipid-binding domain in StAR and ... |
216-436 | 8.45e-53 | ||||
in StAR and phosphatidylcholine transfer protein; putative lipid-binding domain in StAR and phosphatidylcholine transfer protein Pssm-ID: 214575 Cd Length: 205 Bit Score: 180.71 E-value: 8.45e-53
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Homeodomain | pfam00046 | Homeodomain; |
40-96 | 1.87e-17 | ||||
Homeodomain; Pssm-ID: 459649 [Multi-domain] Cd Length: 57 Bit Score: 76.38 E-value: 1.87e-17
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homeodomain | cd00086 | Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ... |
42-99 | 2.27e-16 | ||||
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner. Pssm-ID: 238039 [Multi-domain] Cd Length: 59 Bit Score: 73.43 E-value: 2.27e-16
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HOX | smart00389 | Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ... |
39-92 | 2.56e-15 | ||||
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes Pssm-ID: 197696 [Multi-domain] Cd Length: 57 Bit Score: 70.36 E-value: 2.56e-15
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COG5576 | COG5576 | Homeodomain-containing transcription factor [Transcription]; |
25-138 | 9.55e-10 | ||||
Homeodomain-containing transcription factor [Transcription]; Pssm-ID: 227863 [Multi-domain] Cd Length: 156 Bit Score: 57.83 E-value: 9.55e-10
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Homeobox_KN | pfam05920 | Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ... |
55-92 | 9.24e-06 | ||||
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified. Pssm-ID: 428673 Cd Length: 39 Bit Score: 42.89 E-value: 9.24e-06
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START | cd00177 | Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins; This family ... |
479-632 | 7.44e-03 | ||||
Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins; This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular processes including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, and autoimmune disease. The Arabidopsis homeobox protein GLABRA 2 suppresses root hair formation in hairless epidermal root cells. Pssm-ID: 176851 [Multi-domain] Cd Length: 193 Bit Score: 38.09 E-value: 7.44e-03
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Blast search parameters | ||||
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