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Conserved domains on  [gi|18405254|ref|NP_566809|]
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Ribosomal protein S21 family protein [Arabidopsis thaliana]

Protein Classification

30S ribosomal protein S21( domain architecture ID 10002851)

30S ribosomal protein S21 is a component of the small ribosomal subunit 30S

Gene Ontology:  GO:0006412|GO:0003735
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpsU COG0828
Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S21 ...
 87-145 4.78e-11

Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S21 is part of the Pathway/BioSystem: Ribosome 30S subunit


:

Pssm-ID: 440590  Cd Length: 62  Bit Score: 55.50  E-value: 4.78e-11
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 18405254  87 VQVFVEDNESEERLVNRFRREVMRTGVIQECKRRRYFENKQDEKKRRTRDAAKRNKKRR 145
Cdd:COG0828   2 IEVKVRENESIDSALRRFKRKVEKEGILRELRRREHYEKPSEKRKRKKAAARRRQRKRL 60
 
Name Accession Description Interval E-value
RpsU COG0828
Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S21 ...
 87-145 4.78e-11

Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S21 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440590  Cd Length: 62  Bit Score: 55.50  E-value: 4.78e-11
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 18405254  87 VQVFVEDNESEERLVNRFRREVMRTGVIQECKRRRYFENKQDEKKRRTRDAAKRNKKRR 145
Cdd:COG0828   2 IEVKVRENESIDSALRRFKRKVEKEGILRELRRREHYEKPSEKRKRKKAAARRRQRKRL 60
Ribosomal_S21 pfam01165
Ribosomal protein S21;
88-138 1.81e-09

Ribosomal protein S21;


Pssm-ID: 460092  Cd Length: 51  Bit Score: 51.31  E-value: 1.81e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 18405254    88 QVFVEDNESEERLVNRFRREVMRTGVIQECKRRRYFENKQDEKKRRTRDAA 138
Cdd:pfam01165   1 TVDVKEGENIERALRRLKRKVERNGILRELRRRRFYEKPSEKRKRKKREAW 51
S21p TIGR00030
ribosomal protein S21; This model describes bacterial ribosomal protein S21 and most ...
 87-144 7.40e-07

ribosomal protein S21; This model describes bacterial ribosomal protein S21 and most mitochondrial and chloroplast equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 129141  Cd Length: 58  Bit Score: 44.57  E-value: 7.40e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 18405254    87 VQVFVEDNESEERLVNRFRREVMRTGVIQECKRRRYFENKQDEKKRRTRDAAKRNKKR 144
Cdd:TIGR00030   1 PTVKVKEGESIDSALRRFKRKLEKEGILRELKKRRYYEKPSERRRRKEKAAAKRIRKK 58
 
Name Accession Description Interval E-value
RpsU COG0828
Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S21 ...
 87-145 4.78e-11

Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S21 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440590  Cd Length: 62  Bit Score: 55.50  E-value: 4.78e-11
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 18405254  87 VQVFVEDNESEERLVNRFRREVMRTGVIQECKRRRYFENKQDEKKRRTRDAAKRNKKRR 145
Cdd:COG0828   2 IEVKVRENESIDSALRRFKRKVEKEGILRELRRREHYEKPSEKRKRKKAAARRRQRKRL 60
Ribosomal_S21 pfam01165
Ribosomal protein S21;
88-138 1.81e-09

Ribosomal protein S21;


Pssm-ID: 460092  Cd Length: 51  Bit Score: 51.31  E-value: 1.81e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 18405254    88 QVFVEDNESEERLVNRFRREVMRTGVIQECKRRRYFENKQDEKKRRTRDAA 138
Cdd:pfam01165   1 TVDVKEGENIERALRRLKRKVERNGILRELRRRRFYEKPSEKRKRKKREAW 51
S21p TIGR00030
ribosomal protein S21; This model describes bacterial ribosomal protein S21 and most ...
 87-144 7.40e-07

ribosomal protein S21; This model describes bacterial ribosomal protein S21 and most mitochondrial and chloroplast equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 129141  Cd Length: 58  Bit Score: 44.57  E-value: 7.40e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 18405254    87 VQVFVEDNESEERLVNRFRREVMRTGVIQECKRRRYFENKQDEKKRRTRDAAKRNKKR 144
Cdd:TIGR00030   1 PTVKVKEGESIDSALRRFKRKLEKEGILRELKKRRYYEKPSERRRRKEKAAAKRIRKK 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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