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Conserved domains on  [gi|18399308|ref|NP_566396|]
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NDR1/HIN1-like 1 [Arabidopsis thaliana]

Protein Classification

LEA type 2 family protein( domain architecture ID 10504605)

late embryogenesis abundant (LEA) type 2 family protein plays a role in tolerance to drought and other abiotic stresses in plants

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LEA_2 pfam03168
Late embryogenesis abundant protein; Different types of LEA proteins are expressed at ...
 74-177 7.00e-09

Late embryogenesis abundant protein; Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family.


:

Pssm-ID: 427176  Cd Length: 99  Bit Score: 51.55  E-value: 7.00e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18399308    74 TLSSRNPNnKIGIYYDRLDVYATYRSQQITFPTSIPPTYQGHKDVDiwspfVYGTSVPIAPFNGVSLdTDKDNGVVLLII 153
Cdd:pfam03168   1 TLRVRNPN-SFGLPYDGLDYDLSYNGQPLASGGSPQPGTIPAGGTT-----TLEVPVSVSYDDLVRL-LRDLISVVGLEL 73

                          90       100
                  ....*....|....*....|....
gi 18399308   154 RADGRVRWKVGTFITGKYHLHVKC 177
Cdd:pfam03168  74 PYTLRGRLKVGGPFFGSRTVPLSV 97
ASC super family cl47603
Amiloride-sensitive sodium channel;
4-41 7.07e-03

Amiloride-sensitive sodium channel;


The actual alignment was detected with superfamily member pfam00858:

Pssm-ID: 459966 [Multi-domain]  Cd Length: 439  Bit Score: 36.76  E-value: 7.07e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 18399308     4 CEN---HG----HSRRKLIRRIFWSIIFVLFIIFLTILLIWAILQ 41
Cdd:pfam00858   2 CENtsiHGvryiKSKDGFLRRLFWLLLFLASLIFLIYLISLLFEK 46
 
Name Accession Description Interval E-value
LEA_2 pfam03168
Late embryogenesis abundant protein; Different types of LEA proteins are expressed at ...
 74-177 7.00e-09

Late embryogenesis abundant protein; Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family.


Pssm-ID: 427176  Cd Length: 99  Bit Score: 51.55  E-value: 7.00e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18399308    74 TLSSRNPNnKIGIYYDRLDVYATYRSQQITFPTSIPPTYQGHKDVDiwspfVYGTSVPIAPFNGVSLdTDKDNGVVLLII 153
Cdd:pfam03168   1 TLRVRNPN-SFGLPYDGLDYDLSYNGQPLASGGSPQPGTIPAGGTT-----TLEVPVSVSYDDLVRL-LRDLISVVGLEL 73

                          90       100
                  ....*....|....*....|....
gi 18399308   154 RADGRVRWKVGTFITGKYHLHVKC 177
Cdd:pfam03168  74 PYTLRGRLKVGGPFFGSRTVPLSV 97
ASC pfam00858
Amiloride-sensitive sodium channel;
4-41 7.07e-03

Amiloride-sensitive sodium channel;


Pssm-ID: 459966 [Multi-domain]  Cd Length: 439  Bit Score: 36.76  E-value: 7.07e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 18399308     4 CEN---HG----HSRRKLIRRIFWSIIFVLFIIFLTILLIWAILQ 41
Cdd:pfam00858   2 CENtsiHGvryiKSKDGFLRRLFWLLLFLASLIFLIYLISLLFEK 46
 
Name Accession Description Interval E-value
LEA_2 pfam03168
Late embryogenesis abundant protein; Different types of LEA proteins are expressed at ...
 74-177 7.00e-09

Late embryogenesis abundant protein; Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family.


Pssm-ID: 427176  Cd Length: 99  Bit Score: 51.55  E-value: 7.00e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18399308    74 TLSSRNPNnKIGIYYDRLDVYATYRSQQITFPTSIPPTYQGHKDVDiwspfVYGTSVPIAPFNGVSLdTDKDNGVVLLII 153
Cdd:pfam03168   1 TLRVRNPN-SFGLPYDGLDYDLSYNGQPLASGGSPQPGTIPAGGTT-----TLEVPVSVSYDDLVRL-LRDLISVVGLEL 73

                          90       100
                  ....*....|....*....|....
gi 18399308   154 RADGRVRWKVGTFITGKYHLHVKC 177
Cdd:pfam03168  74 PYTLRGRLKVGGPFFGSRTVPLSV 97
ASC pfam00858
Amiloride-sensitive sodium channel;
4-41 7.07e-03

Amiloride-sensitive sodium channel;


Pssm-ID: 459966 [Multi-domain]  Cd Length: 439  Bit Score: 36.76  E-value: 7.07e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 18399308     4 CEN---HG----HSRRKLIRRIFWSIIFVLFIIFLTILLIWAILQ 41
Cdd:pfam00858   2 CENtsiHGvryiKSKDGFLRRLFWLLLFLASLIFLIYLISLLFEK 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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