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Conserved domains on  [gi|18404784|ref|NP_565892|]
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Transmembrane proteins 14C [Arabidopsis thaliana]

Protein Classification

TMEM14 family protein( domain architecture ID 10508392)

TMEM14 family protein contains four hydrophobic alpha-helical regions, three of which are membrane-spanning, similar to Arabidopsis thaliana fatty acid export proteins

CATH:  1.10.10.1740
Gene Ontology:  GO:0016020

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Tmemb_14 pfam03647
Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.
207-301 1.46e-15

Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.


:

Pssm-ID: 461004  Cd Length: 89  Bit Score: 70.99  E-value: 1.46e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18404784   207 VGIPYGLLLLVGGFINFMVSGSIPAIRFGVILGGALFALSLASLKshrKGESSTKFLKGQMAIVAIIFLRELRlllSQKS 286
Cdd:pfam03647   1 LGIPYGALLAVGGIMGYARAGSVPSLIAGLGFGALLLLGGYLSLN---APYGLELALGASAVLAGVMGPRFIK---TRKF 74
                          90
                  ....*....|....*
gi 18404784   287 TFLGFFTTLTSGGVL 301
Cdd:pfam03647  75 MPAGLLALLSLLMLA 89
 
Name Accession Description Interval E-value
Tmemb_14 pfam03647
Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.
207-301 1.46e-15

Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.


Pssm-ID: 461004  Cd Length: 89  Bit Score: 70.99  E-value: 1.46e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18404784   207 VGIPYGLLLLVGGFINFMVSGSIPAIRFGVILGGALFALSLASLKshrKGESSTKFLKGQMAIVAIIFLRELRlllSQKS 286
Cdd:pfam03647   1 LGIPYGALLAVGGIMGYARAGSVPSLIAGLGFGALLLLGGYLSLN---APYGLELALGASAVLAGVMGPRFIK---TRKF 74
                          90
                  ....*....|....*
gi 18404784   287 TFLGFFTTLTSGGVL 301
Cdd:pfam03647  75 MPAGLLALLSLLMLA 89
COG5548 COG5548
Uncharacterized membrane protein, UPF0136 family [Function unknown];
211-285 5.37e-04

Uncharacterized membrane protein, UPF0136 family [Function unknown];


Pssm-ID: 444291  Cd Length: 106  Bit Score: 38.72  E-value: 5.37e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18404784 211 YGLLLLVGGFINFMVSGSIPAIRFGVILGGALFALSLASLKSHRKGESSTKFLkgqMAIVAIIFLreLRLLLSQK 285
Cdd:COG5548  11 YGILVIIGGIIGYVKAKSKVSLISGVISGILLLVAGYLQLQGQVWGLTLATAI---TALLVIFFA--YRFVKTRK 80
 
Name Accession Description Interval E-value
Tmemb_14 pfam03647
Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.
207-301 1.46e-15

Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.


Pssm-ID: 461004  Cd Length: 89  Bit Score: 70.99  E-value: 1.46e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18404784   207 VGIPYGLLLLVGGFINFMVSGSIPAIRFGVILGGALFALSLASLKshrKGESSTKFLKGQMAIVAIIFLRELRlllSQKS 286
Cdd:pfam03647   1 LGIPYGALLAVGGIMGYARAGSVPSLIAGLGFGALLLLGGYLSLN---APYGLELALGASAVLAGVMGPRFIK---TRKF 74
                          90
                  ....*....|....*
gi 18404784   287 TFLGFFTTLTSGGVL 301
Cdd:pfam03647  75 MPAGLLALLSLLMLA 89
COG5548 COG5548
Uncharacterized membrane protein, UPF0136 family [Function unknown];
211-285 5.37e-04

Uncharacterized membrane protein, UPF0136 family [Function unknown];


Pssm-ID: 444291  Cd Length: 106  Bit Score: 38.72  E-value: 5.37e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18404784 211 YGLLLLVGGFINFMVSGSIPAIRFGVILGGALFALSLASLKSHRKGESSTKFLkgqMAIVAIIFLreLRLLLSQK 285
Cdd:COG5548  11 YGILVIIGGIIGYVKAKSKVSLISGVISGILLLVAGYLQLQGQVWGLTLATAI---TALLVIFFA--YRFVKTRK 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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