Homeodomain-like superfamily protein [Arabidopsis thaliana]
Protein Classification
Myb family transcription factor( domain architecture ID 10412647)
Myb family transcription factor similar to phosphate starvation response (PSR) proteins that are involved in phosphate starvation signaling both in vascular plants and in unicellular algae
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| Myb_CC_LHEQLE | pfam14379 | MYB-CC type transfactor, LHEQLE motif; This family is found towards the C-terminus of Myb-CC ... |
65-104 | 7.95e-22 | ||
MYB-CC type transfactor, LHEQLE motif; This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. : Pssm-ID: 464160 Cd Length: 47 Bit Score: 86.12 E-value: 7.95e-22
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| SANT super family | cl21498 | 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ... |
2-25 | 3.76e-04 | ||
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. The actual alignment was detected with superfamily member TIGR01557: Pssm-ID: 473887 [Multi-domain] Cd Length: 57 Bit Score: 37.77 E-value: 3.76e-04
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| Name | Accession | Description | Interval | E-value | ||
| Myb_CC_LHEQLE | pfam14379 | MYB-CC type transfactor, LHEQLE motif; This family is found towards the C-terminus of Myb-CC ... |
65-104 | 7.95e-22 | ||
MYB-CC type transfactor, LHEQLE motif; This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Pssm-ID: 464160 Cd Length: 47 Bit Score: 86.12 E-value: 7.95e-22
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| myb_SHAQKYF | TIGR01557 | myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain ... |
2-25 | 3.76e-04 | ||
myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Pssm-ID: 130620 [Multi-domain] Cd Length: 57 Bit Score: 37.77 E-value: 3.76e-04
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| Name | Accession | Description | Interval | E-value | ||
| Myb_CC_LHEQLE | pfam14379 | MYB-CC type transfactor, LHEQLE motif; This family is found towards the C-terminus of Myb-CC ... |
65-104 | 7.95e-22 | ||
MYB-CC type transfactor, LHEQLE motif; This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Pssm-ID: 464160 Cd Length: 47 Bit Score: 86.12 E-value: 7.95e-22
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| myb_SHAQKYF | TIGR01557 | myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain ... |
2-25 | 3.76e-04 | ||
myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Pssm-ID: 130620 [Multi-domain] Cd Length: 57 Bit Score: 37.77 E-value: 3.76e-04
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| Blast search parameters | ||||
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