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Conserved domains on  [gi|18408276|ref|NP_564851|]
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antigen receptor-like protein (DUF565) [Arabidopsis thaliana]

Protein Classification

DUF565 domain-containing protein( domain architecture ID 10517301)

DUF565 domain-containing protein; similar to Arabidopsis thaliana Ycf20-like protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF565 pfam04483
Protein of unknown function (DUF565); Predicted transmembrane protein found in plants, ...
 137-197 5.54e-19

Protein of unknown function (DUF565); Predicted transmembrane protein found in plants, chloroplasts and cyanobacteria. This family is also known as YCF20.


:

Pssm-ID: 461326  Cd Length: 57  Bit Score: 76.43  E-value: 5.54e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18408276   137 DWDVLVAGIVVAAIEGIGMLMYKKPsssmFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS 197
Cdd:pfam04483   1 DWDVVVAALLVLFTEVISRLFYRRS----GKPKRSLLVEILNSFKIGLIYGLFLEAFKLGS 57
 
Name Accession Description Interval E-value
DUF565 pfam04483
Protein of unknown function (DUF565); Predicted transmembrane protein found in plants, ...
 137-197 5.54e-19

Protein of unknown function (DUF565); Predicted transmembrane protein found in plants, chloroplasts and cyanobacteria. This family is also known as YCF20.


Pssm-ID: 461326  Cd Length: 57  Bit Score: 76.43  E-value: 5.54e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18408276   137 DWDVLVAGIVVAAIEGIGMLMYKKPsssmFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS 197
Cdd:pfam04483   1 DWDVVVAALLVLFTEVISRLFYRRS----GKPKRSLLVEILNSFKIGLIYGLFLEAFKLGS 57
 
Name Accession Description Interval E-value
DUF565 pfam04483
Protein of unknown function (DUF565); Predicted transmembrane protein found in plants, ...
 137-197 5.54e-19

Protein of unknown function (DUF565); Predicted transmembrane protein found in plants, chloroplasts and cyanobacteria. This family is also known as YCF20.


Pssm-ID: 461326  Cd Length: 57  Bit Score: 76.43  E-value: 5.54e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18408276   137 DWDVLVAGIVVAAIEGIGMLMYKKPsssmFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS 197
Cdd:pfam04483   1 DWDVVVAALLVLFTEVISRLFYRRS----GKPKRSLLVEILNSFKIGLIYGLFLEAFKLGS 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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