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Conserved domains on  [gi|18394953|ref|NP_564135|]
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Cupredoxin superfamily protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Cupredoxin super family cl19115
Cupredoxin superfamily; Cupredoxins contain type I copper centers and are involved in ...
30-123 1.72e-04

Cupredoxin superfamily; Cupredoxins contain type I copper centers and are involved in inter-molecular electron transfer reactions. Cupredoxins are blue copper proteins, having an intense blue color due to the presence of a mononuclear type 1 (T1) copper site. Structurally, the cupredoxin-like fold consists of a beta-sandwich with 7 strands in 2 beta-sheets, which is arranged in a Greek-key beta-barrel. Some of these proteins have lost the ability to bind copper. The majority of family members contain multiple cupredoxin domain repeats: ceruloplasmin and the coagulation factors V/VIII have six repeats; laccase, ascorbate oxidase, spore coat protein A, and multicopper oxidase CueO contain three repeats; and nitrite reductase has two repeats. Others are mono-domain cupredoxins, such as plastocyanin, pseudoazurin, plantacyanin, azurin, rusticyanin, stellacyanin, quinol oxidase, and the periplasmic domain of cytochrome c oxidase subunit II.


The actual alignment was detected with superfamily member cd04216:

Pssm-ID: 473140 [Multi-domain]  Cd Length: 98  Bit Score: 39.55  E-value: 1.72e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394953  30 ATFLVDGVSVWKSP----------TVHTGDSVIFRHKYGYDLYIFRNKDAFNVCNFTQATLLTKPNSTSFTwyPSRTGSY 99
Cdd:cd04216   1 TDYTVGDSNGWDLPvnytawasgkTFRVGDSLVFNYNAGAHSVVEVNEADYDSCDTSNPINTYTSGNDSVT--LTKPGTR 78
                        90       100
                ....*....|....*....|....
gi 18394953 100 YFSFTNNTSlpktCQLNQKLTVQV 123
Cdd:cd04216  79 YFICGVPGH----CQSGMKLAINV 98
PRK06549 super family cl35488
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
126-186 4.24e-04

acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated


The actual alignment was detected with superfamily member PRK06549:

Pssm-ID: 235826 [Multi-domain]  Cd Length: 130  Bit Score: 39.02  E-value: 4.24e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18394953  126 AAASPPSQPpATAPVPVSEGGVISSPSSYPWPLGPREGSAFsPGPSPSEITSVTVPGKDGV 186
Cdd:PRK06549  25 AQAAAPAQP-ASTPVPVPTEASPQVEAQAPQPAAAAGADAM-PSPMPGTILKVLVAVGDQV 83
 
Name Accession Description Interval E-value
Phytocyanin cd04216
Phytocyanins are plant blue or type I copper proteins; Phytocyanins are plant blue or type I ...
30-123 1.72e-04

Phytocyanins are plant blue or type I copper proteins; Phytocyanins are plant blue or type I copper proteins. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. Phytocyanins are classified into four groups: stellacyanin, plantacyanin, uclacyanin and early nodulin groups. Stellacyanin appears to be associated with the plant cell wall; it may be involved in oxidative reactions to build polymeric material making up the cell wall. Plantacyanin is shown to play a role in reproduction in Arabidopsis. Plantacyanins may also be stress-related proteins and may be involved in plant defense responses. The early nodulin-like protein (OsENODL1) from Oryza sativa is expressed specifically at the late developmental stage of the seeds.


Pssm-ID: 259878 [Multi-domain]  Cd Length: 98  Bit Score: 39.55  E-value: 1.72e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394953  30 ATFLVDGVSVWKSP----------TVHTGDSVIFRHKYGYDLYIFRNKDAFNVCNFTQATLLTKPNSTSFTwyPSRTGSY 99
Cdd:cd04216   1 TDYTVGDSNGWDLPvnytawasgkTFRVGDSLVFNYNAGAHSVVEVNEADYDSCDTSNPINTYTSGNDSVT--LTKPGTR 78
                        90       100
                ....*....|....*....|....
gi 18394953 100 YFSFTNNTSlpktCQLNQKLTVQV 123
Cdd:cd04216  79 YFICGVPGH----CQSGMKLAINV 98
PRK06549 PRK06549
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
126-186 4.24e-04

acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated


Pssm-ID: 235826 [Multi-domain]  Cd Length: 130  Bit Score: 39.02  E-value: 4.24e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18394953  126 AAASPPSQPpATAPVPVSEGGVISSPSSYPWPLGPREGSAFsPGPSPSEITSVTVPGKDGV 186
Cdd:PRK06549  25 AQAAAPAQP-ASTPVPVPTEASPQVEAQAPQPAAAAGADAM-PSPMPGTILKVLVAVGDQV 83
SAP130_C pfam16014
Histone deacetylase complex subunit SAP130 C-terminus;
105-217 1.39e-03

Histone deacetylase complex subunit SAP130 C-terminus;


Pssm-ID: 464973 [Multi-domain]  Cd Length: 371  Bit Score: 39.15  E-value: 1.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394953   105 NNTSLPKTCQLNQklTVQVILAAASPPSQPPA-----------TAPVPVSEGGVISSPSsypwplgpregsafSPGPS-- 171
Cdd:pfam16014  50 TASASPPSQHPAQ--AIPTILAPAAPPSQPSVvlstlpaamavTPPIPASMANVVAPPT--------------QPAASst 113
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 18394953   172 PSEITSVTVPG---KDGVPFINSNPAVPLPTgdvdSTSINPLPTSTNSA 217
Cdd:pfam16014 114 AACAVSSVLPEikiKQEAEPMDTSQSVPPLT----PTSISPALTSLANN 158
 
Name Accession Description Interval E-value
Phytocyanin cd04216
Phytocyanins are plant blue or type I copper proteins; Phytocyanins are plant blue or type I ...
30-123 1.72e-04

Phytocyanins are plant blue or type I copper proteins; Phytocyanins are plant blue or type I copper proteins. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. Phytocyanins are classified into four groups: stellacyanin, plantacyanin, uclacyanin and early nodulin groups. Stellacyanin appears to be associated with the plant cell wall; it may be involved in oxidative reactions to build polymeric material making up the cell wall. Plantacyanin is shown to play a role in reproduction in Arabidopsis. Plantacyanins may also be stress-related proteins and may be involved in plant defense responses. The early nodulin-like protein (OsENODL1) from Oryza sativa is expressed specifically at the late developmental stage of the seeds.


Pssm-ID: 259878 [Multi-domain]  Cd Length: 98  Bit Score: 39.55  E-value: 1.72e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394953  30 ATFLVDGVSVWKSP----------TVHTGDSVIFRHKYGYDLYIFRNKDAFNVCNFTQATLLTKPNSTSFTwyPSRTGSY 99
Cdd:cd04216   1 TDYTVGDSNGWDLPvnytawasgkTFRVGDSLVFNYNAGAHSVVEVNEADYDSCDTSNPINTYTSGNDSVT--LTKPGTR 78
                        90       100
                ....*....|....*....|....
gi 18394953 100 YFSFTNNTSlpktCQLNQKLTVQV 123
Cdd:cd04216  79 YFICGVPGH----CQSGMKLAINV 98
PRK06549 PRK06549
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
126-186 4.24e-04

acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated


Pssm-ID: 235826 [Multi-domain]  Cd Length: 130  Bit Score: 39.02  E-value: 4.24e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18394953  126 AAASPPSQPpATAPVPVSEGGVISSPSSYPWPLGPREGSAFsPGPSPSEITSVTVPGKDGV 186
Cdd:PRK06549  25 AQAAAPAQP-ASTPVPVPTEASPQVEAQAPQPAAAAGADAM-PSPMPGTILKVLVAVGDQV 83
PHA03247 PHA03247
large tegument protein UL36; Provisional
127-217 6.03e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.69  E-value: 6.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394953   127 AASPPSQPPATAPVPVSEGGVISSPSSYPWPLGPREGSAFSPGPS---PSEITSVTVPGKDGVP-FINSNPAVPLPTGDV 202
Cdd:PHA03247 2912 QAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSgavPQPWLGALVPGRVAVPrFRVPQPAPSREAPAS 2991
                          90
                  ....*....|....*
gi 18394953   203 DSTSINPLPTSTNSA 217
Cdd:PHA03247 2992 STPPLTGHSLSRVSS 3006
SAP130_C pfam16014
Histone deacetylase complex subunit SAP130 C-terminus;
105-217 1.39e-03

Histone deacetylase complex subunit SAP130 C-terminus;


Pssm-ID: 464973 [Multi-domain]  Cd Length: 371  Bit Score: 39.15  E-value: 1.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394953   105 NNTSLPKTCQLNQklTVQVILAAASPPSQPPA-----------TAPVPVSEGGVISSPSsypwplgpregsafSPGPS-- 171
Cdd:pfam16014  50 TASASPPSQHPAQ--AIPTILAPAAPPSQPSVvlstlpaamavTPPIPASMANVVAPPT--------------QPAASst 113
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 18394953   172 PSEITSVTVPG---KDGVPFINSNPAVPLPTgdvdSTSINPLPTSTNSA 217
Cdd:pfam16014 114 AACAVSSVLPEikiKQEAEPMDTSQSVPPLT----PTSISPALTSLANN 158
Mavicyanin cd11014
Mavicyanin is a subclass of phytocyanins, a plant blue copper protein; Mavicyanin is a ...
41-123 1.65e-03

Mavicyanin is a subclass of phytocyanins, a plant blue copper protein; Mavicyanin is a glycosylated protein isolated from Cucurbita pepo medullosa (zucchini) peelings. It belongs to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Mavicyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. The copper is tetrahedrally coordinated by a cysteine, 2 histidines, and a glutamine residue, like in the case of stellacyanin. The biological roles of mavicyanin have not been elucidated yet.


Pssm-ID: 259900  Cd Length: 101  Bit Score: 36.99  E-value: 1.65e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394953  41 KSPTVHTGDSVIFrhKYGYDLYIFR--NKDAFNVCN--FTQATLLTKPNSTSFTwypsRTGSYYFSftnnTSLPKTCQLN 116
Cdd:cd11014  24 SSKTFHVGDSLIF--QYNKEFHDVTevTGEEFESCNstSPIAVYNTGHDIIKLT----KPGQYYFI----CGVPGHCDSG 93

                ....*..
gi 18394953 117 QKLTVQV 123
Cdd:cd11014  94 QKLQVNV 100
PHA03247 PHA03247
large tegument protein UL36; Provisional
126-217 2.41e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.15  E-value: 2.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394953   126 AAASPPSQPPATAPVPVSEGGVISSPSSyPWPLGPREGSAFSPGPSPSEITSvtvpgkdgvpfinSNPAVPLPTgdvdST 205
Cdd:PHA03247 2771 PPAAPAAGPPRRLTRPAVASLSESRESL-PSPWDPADPPAAVLAPAAALPPA-------------ASPAGPLPP----PT 2832
                          90
                  ....*....|..
gi 18394953   206 SINPLPTSTNSA 217
Cdd:PHA03247 2833 SAQPTAPPPPPG 2844
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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