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Conserved domains on  [gi|17551266|ref|NP_508280|]
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putative ATP-citrate synthase [Caenorhabditis elegans]

Protein Classification

PLN02235 and CS_ACL-C_CCL superfamily-containing protein( domain architecture ID 1904422)

PLN02235 and CS_ACL-C_CCL superfamily-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PLN02522 super family cl31895
ATP citrate (pro-S)-lyase
492-1097 0e+00

ATP citrate (pro-S)-lyase


The actual alignment was detected with superfamily member PLN02522:

Pssm-ID: 178137 [Multi-domain]  Cd Length: 608  Bit Score: 904.96  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   492 LFEDDTKAIIWGQQAKAIQGMLDFDYVCRRSSPSVVASTYPfTGDNKQKYYFGQKEILIPAYKSMAKAFATHPDASIMVT 571
Cdd:PLN02522    6 LFSRTTQALFYNYKQLPVQRMLDFDFLCGRETPSVAGIINP-GSEGFQKLFFGQEEIAIPVHGSIEAACKAHPTADVFIN 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   572 FASMRSVFETVLEALEFPQIKVIAIIAEGVPENQTRKLLKIAHDRGVTLVGPATVGGIKPGCFKIGNTGGMMDNILASKL 651
Cdd:PLN02522   85 FASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKVVIGPATVGGIQAGAFKIGDTAGTLDNIIQCKL 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   652 YRPGSVAYVSRSGGMSNELNNIISQNTNGVYEGIAIGGDRYPGSTYTDHVIRYQNDDRVKMIVLLGEVGGVEEYKIVDLL 731
Cdd:PLN02522  165 YRPGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEYSLVEAL 244
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   732 KQKKVTKPLVAWCIGTCADHITSEVQFGHAGASANALGETAACKNAALRASGALVPESFDDLGNKIRQTYDELVSQQIIV 811
Cdd:PLN02522  245 KQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAIVPTSFEALEAAIKETFEKLVEEGKII 324
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   812 PQPEVPPPAVPMDYAWARELGLIRKPASFMTSICDERGEELNYAGVPITKVLESDMGIGGVLGLLWFQKRLPPHANKFIE 891
Cdd:PLN02522  325 PVKEVTPPQIPEDLNSAIKSGKVRAPTHIVSTISDDRGEEPCYAGVPMSSIIEKDYGVGDVISLLWFKRSLPRYCTKFIE 404
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   892 ICLMLTADHGPAVSGAHNTIVCARAGKDLISSLTSGLLTIGDRFGGALDGAARQFSEAFDQGWSANQFVSEMRKKGKHIM 971
Cdd:PLN02522  405 MCIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLTPYEFVEGMKKKGIRVP 484
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   972 GIGHRVKSINNPDKRVEILKRFAMDkkeFAQETPLFEYALEVEKITTAKKPNLILNVDGAIAILFVDILRHSGMFTKQEA 1051
Cdd:PLN02522  485 GIGHRIKSRDNRDKRVELLQKYART---HFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEI 561
                         570       580       590       600
                  ....*....|....*....|....*....|....*....|....*.
gi 17551266  1052 EETIEIGSLNGLFVLGRSIGFIGHYLDQSRLKQGLYRHPWDDISYI 1097
Cdd:PLN02522  562 DEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYT 607
PLN02235 super family cl42902
ATP citrate (pro-S)-lyase
1-431 4.85e-118

ATP citrate (pro-S)-lyase


The actual alignment was detected with superfamily member PLN02235:

Pssm-ID: 177879 [Multi-domain]  Cd Length: 423  Bit Score: 370.64  E-value: 4.85e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266     1 MSAKAVSELSGKEVLYKYFEP-SGLLSAPHAFHVKAGENFDEIANKYEWLArDNKGVIKPDQLIKRRGKLGLVKIGTPQE 79
Cdd:PLN02235    1 MARKKIREYDSKRLLKEHLKRlAGIDLPIRSAQVTESTDFNELANKEPWLS-STKLVVKPDMLFGKRGKSGLVALNLDLA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266    80 LKAWF--EKTGDSyVRVGQTEGRLHTFIVEPFCAHteKDEMYIAIYSERFRDVIMFYEQGGVDIGDVEEKARTVSVPVql 157
Cdd:PLN02235   80 QVATFvkERLGKE-VEMGGCKGPITTFIVEPFVPH--DQEFYLSIVSDRLGCSISFSECGGIEIEENWDKVKTIFLPT-- 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   158 nENAMTPsdEELTTLLG--PLKDSDIVRRFVVELYKAYKDLHFTYLEINPFVLLNNQIHVLDLAARLDETANFLCADKWk 235
Cdd:PLN02235  155 -EAPLTS--EICAPLIAtlPLEIRGKIEEFIKGVFAVFQDLDFTFLEMNPFTLVDGEPYPLDMRGELDDTAAFKNFKKW- 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   236 srltpyggpNHVEFPAPFGRDLTSEEQYISEMDAKTGASLKLTILNRKGRVWTMVAGGGASVVFTDTVCDLGGASELANY 315
Cdd:PLN02235  231 ---------GNIEFPLPFGRVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNY 301
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   316 GEYSGDPSESQTYEYAKTLLSVmteGTPRPDGK--VLIIGGSIANFTNVAKTFGGIVRAFETFVSKLKEHKVTIFVRRGG 393
Cdd:PLN02235  302 AEYSGAPNEEEVLQYARVVIDC---ATANPDGRkrALLIGGGIANFTDVAATFNGIIRALREKESKLKAARMHIFVRRGG 378
                         410       420       430
                  ....*....|....*....|....*....|....*...
gi 17551266   394 PNYQEGLRRIKDAATKLELPIHVFGPETHMTAIVGAAL 431
Cdd:PLN02235  379 PNYQKGLAKMRALGEEIGVPIEVYGPEATMTGICKQAI 416
 
Name Accession Description Interval E-value
PLN02522 PLN02522
ATP citrate (pro-S)-lyase
492-1097 0e+00

ATP citrate (pro-S)-lyase


Pssm-ID: 178137 [Multi-domain]  Cd Length: 608  Bit Score: 904.96  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   492 LFEDDTKAIIWGQQAKAIQGMLDFDYVCRRSSPSVVASTYPfTGDNKQKYYFGQKEILIPAYKSMAKAFATHPDASIMVT 571
Cdd:PLN02522    6 LFSRTTQALFYNYKQLPVQRMLDFDFLCGRETPSVAGIINP-GSEGFQKLFFGQEEIAIPVHGSIEAACKAHPTADVFIN 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   572 FASMRSVFETVLEALEFPQIKVIAIIAEGVPENQTRKLLKIAHDRGVTLVGPATVGGIKPGCFKIGNTGGMMDNILASKL 651
Cdd:PLN02522   85 FASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKVVIGPATVGGIQAGAFKIGDTAGTLDNIIQCKL 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   652 YRPGSVAYVSRSGGMSNELNNIISQNTNGVYEGIAIGGDRYPGSTYTDHVIRYQNDDRVKMIVLLGEVGGVEEYKIVDLL 731
Cdd:PLN02522  165 YRPGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEYSLVEAL 244
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   732 KQKKVTKPLVAWCIGTCADHITSEVQFGHAGASANALGETAACKNAALRASGALVPESFDDLGNKIRQTYDELVSQQIIV 811
Cdd:PLN02522  245 KQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAIVPTSFEALEAAIKETFEKLVEEGKII 324
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   812 PQPEVPPPAVPMDYAWARELGLIRKPASFMTSICDERGEELNYAGVPITKVLESDMGIGGVLGLLWFQKRLPPHANKFIE 891
Cdd:PLN02522  325 PVKEVTPPQIPEDLNSAIKSGKVRAPTHIVSTISDDRGEEPCYAGVPMSSIIEKDYGVGDVISLLWFKRSLPRYCTKFIE 404
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   892 ICLMLTADHGPAVSGAHNTIVCARAGKDLISSLTSGLLTIGDRFGGALDGAARQFSEAFDQGWSANQFVSEMRKKGKHIM 971
Cdd:PLN02522  405 MCIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLTPYEFVEGMKKKGIRVP 484
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   972 GIGHRVKSINNPDKRVEILKRFAMDkkeFAQETPLFEYALEVEKITTAKKPNLILNVDGAIAILFVDILRHSGMFTKQEA 1051
Cdd:PLN02522  485 GIGHRIKSRDNRDKRVELLQKYART---HFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEI 561
                         570       580       590       600
                  ....*....|....*....|....*....|....*....|....*.
gi 17551266  1052 EETIEIGSLNGLFVLGRSIGFIGHYLDQSRLKQGLYRHPWDDISYI 1097
Cdd:PLN02522  562 DEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYT 607
PLN02235 PLN02235
ATP citrate (pro-S)-lyase
1-431 4.85e-118

ATP citrate (pro-S)-lyase


Pssm-ID: 177879 [Multi-domain]  Cd Length: 423  Bit Score: 370.64  E-value: 4.85e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266     1 MSAKAVSELSGKEVLYKYFEP-SGLLSAPHAFHVKAGENFDEIANKYEWLArDNKGVIKPDQLIKRRGKLGLVKIGTPQE 79
Cdd:PLN02235    1 MARKKIREYDSKRLLKEHLKRlAGIDLPIRSAQVTESTDFNELANKEPWLS-STKLVVKPDMLFGKRGKSGLVALNLDLA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266    80 LKAWF--EKTGDSyVRVGQTEGRLHTFIVEPFCAHteKDEMYIAIYSERFRDVIMFYEQGGVDIGDVEEKARTVSVPVql 157
Cdd:PLN02235   80 QVATFvkERLGKE-VEMGGCKGPITTFIVEPFVPH--DQEFYLSIVSDRLGCSISFSECGGIEIEENWDKVKTIFLPT-- 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   158 nENAMTPsdEELTTLLG--PLKDSDIVRRFVVELYKAYKDLHFTYLEINPFVLLNNQIHVLDLAARLDETANFLCADKWk 235
Cdd:PLN02235  155 -EAPLTS--EICAPLIAtlPLEIRGKIEEFIKGVFAVFQDLDFTFLEMNPFTLVDGEPYPLDMRGELDDTAAFKNFKKW- 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   236 srltpyggpNHVEFPAPFGRDLTSEEQYISEMDAKTGASLKLTILNRKGRVWTMVAGGGASVVFTDTVCDLGGASELANY 315
Cdd:PLN02235  231 ---------GNIEFPLPFGRVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNY 301
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   316 GEYSGDPSESQTYEYAKTLLSVmteGTPRPDGK--VLIIGGSIANFTNVAKTFGGIVRAFETFVSKLKEHKVTIFVRRGG 393
Cdd:PLN02235  302 AEYSGAPNEEEVLQYARVVIDC---ATANPDGRkrALLIGGGIANFTDVAATFNGIIRALREKESKLKAARMHIFVRRGG 378
                         410       420       430
                  ....*....|....*....|....*....|....*...
gi 17551266   394 PNYQEGLRRIKDAATKLELPIHVFGPETHMTAIVGAAL 431
Cdd:PLN02235  379 PNYQKGLAKMRALGEEIGVPIEVYGPEATMTGICKQAI 416
Citrate_bind pfam16114
ATP citrate lyase citrate-binding; This is the citrate-binding domain of ATP citrate lyase. ...
255-432 8.34e-114

ATP citrate lyase citrate-binding; This is the citrate-binding domain of ATP citrate lyase. This domain has a Rossmann fold.


Pssm-ID: 465025  Cd Length: 178  Bit Score: 350.02  E-value: 8.34e-114
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266    255 RDLTSEEQYISEMDAKTGASLKLTILNRKGRVWTMVAGGGASVVFTDTVCDLGGASELANYGEYSGDPSESQTYEYAKTL 334
Cdd:pfam16114    1 RELSPEEAYIAELDAKTGASLKLTILNPKGRIWTMVAGGGASVVYADTIADLGGASELANYGEYSGAPSETQTYEYAKTI 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266    335 LSVMTEgTPRPDGKVLIIGGSIANFTNVAKTFGGIVRAFETFVSKLKEHKVTIFVRRGGPNYQEGLRRIKDAATKLELPI 414
Cdd:pfam16114   81 LDLMTR-EPHPDGKVLIIGGGIANFTDVAATFKGIIRALREYKSKLKEHKVKIWVRRGGPNYQEGLRAMRALGEELGLPI 159
                          170
                   ....*....|....*...
gi 17551266    415 HVFGPETHMTAIVGAALG 432
Cdd:pfam16114  160 HVYGPETHMTGIVPMALG 177
CCL_ACL-C cd06100
Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase ...
856-1096 2.00e-87

Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ACL catalyzes an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. In fungi, yeast, plants, and animals ACL is cytosolic and generates AcCoA for lipogenesis. ACL may be required for fruiting body maturation in the filamentous fungus Sordaria macrospore. In several groups of autotrophic prokaryotes and archaea, ACL carries out the citrate-cleavage reaction of the reductive tricarboxylic acid (rTCA) cycle. In the family Aquificaceae this latter reaction in the rTCA cycle is carried out via a two enzyme system the second enzyme of which is CCL; the first enzyme is citryl-CoA synthetase (CCS) which is not included in this group. Chlorobium limicola ACL is an example of a two-subunit type ACL. It is comprised of a large and a small subunit; it has been speculated that the large subunit arose from a fusion of the small subunit of the two subunit CCS with CCL. The small ACL subunit is a homolog of the larger CCS subunit. Mammalian ACL is of the single-subunit type and may have arisen from the two-subunit ACL by another gene fusion. Mammalian ACLs are homotetramers; the ACLs of C. limicola and Arabidopsis are a heterooctomers (alpha4beta4). In cancer cells there is a shift in energy metabolism to aerobic glycolysis, the glycolytic end product pyruvate enters a truncated TCA cycle generating citrate which is cleaved in the cytosol by ACL. Inhibiting ACL limits the in-vitro proliferation and survival of these cancer cells, reduces in vivo tumor growth, and induces differentiation.


Pssm-ID: 99854 [Multi-domain]  Cd Length: 227  Bit Score: 281.38  E-value: 2.00e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  856 GVPITKVLEsDMGIGGVLGLLWFQKRLPPHANKFIEICLMLTADHGPAVSGAHNTIVCARAG-KDLISSLTSGLLTIGDR 934
Cdd:cd06100    1 GYDLSDLIG-KISFGDVLYLLLKGRLPTPYEARLLEALLVALADHGPATPSAHAARLTASAGpEDLQSAVAAGLLGIGDR 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  935 FGGALDGAARQFSEAFDQG----WSANQFVSEMRKKGKHIMGIGHRVKSinNPDKRVEILKRFAmdkKEFAQETPLFEYA 1010
Cdd:cd06100   80 FGGAGEGAARLFKEAVDSGdaldAAAAEFVAEYRAAKKRIPGFGHPVHK--NPDPRVPRLLELA---RELGPAGPHLDYA 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266 1011 LEVEKITTAKKP-NLILNVDGAIAILFVDIlrhsGMFTkqeaeetieiGSLNGLFVLGRSIGFIGHYLDQSRLKQGLYRH 1089
Cdd:cd06100  155 LAVEKALTAAKGkPLPLNVDGAIAAILLDL----GFPP----------GALRGLFVLGRSPGLIAHALEEKRLGQPLYRH 220

                 ....*..
gi 17551266 1090 PWDDISY 1096
Cdd:cd06100  221 PWDDIEY 227
SucD COG0074
Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]; Succinyl-CoA ...
526-801 4.13e-45

Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]; Succinyl-CoA synthetase, alpha subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 439844 [Multi-domain]  Cd Length: 288  Bit Score: 164.46  E-value: 4.13e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  526 VVASTYPFTGdnkqkyyfGQKEILIPAYKSMAKAF-ATHPDASIMvtFASMRSVFETVLEALEfPQIKVIAIIAEGVPEN 604
Cdd:COG0074   34 VVAGVTPGKG--------GQTVLGVPVFDTVAEAVeETGADASVI--FVPPPFAADAILEAID-AGIKLIVCITEGIPVL 102
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  605 QTRKLLKIAHDRGVTLVGPATVGGIKPGCFKIGntggmmdnILASKLYRPGSVAYVSRSGGMSNELNNIISQNTNGVYEG 684
Cdd:COG0074  103 DMVRVKRYAKAKGTRLIGPNCPGIITPGECKLG--------IMPGHIFKPGRVGIVSRSGTLTYEAVWQLTQAGLGQSTC 174
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  685 IAIGGDRYPGSTYTDHVIRYQNDDRVKMIVLLGEVGGVEEYKIVDLLKqKKVTKPLVAWCIGTCAdhiTSEVQFGHAGAS 764
Cdd:COG0074  175 VGIGGDPIIGTSFIDVLELFEEDPETEAIVMIGEIGGSAEEEAAEYIK-ENMTKPVVAYIAGRTA---PPGKRMGHAGAI 250
                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 17551266  765 ANALGETAACKNAALRASGALVPESFDDLGNKIRQTY 801
Cdd:COG0074  251 ISGGKGTAESKIEALEAAGVPVAESPSEIGELLKKAL 287
Ligase_CoA pfam00549
CoA-ligase; This family includes the CoA ligases Succinyl-CoA synthetase alpha and beta chains, ...
660-785 1.46e-35

CoA-ligase; This family includes the CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate CoA ligase and ATP-citrate lyase. Some members of the family utilize ATP others use GTP.


Pssm-ID: 395434 [Multi-domain]  Cd Length: 128  Bit Score: 131.23  E-value: 1.46e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266    660 VSRSGGMSNELNNIISQNTNGVYEGIAIGGDRYPGSTYTDHVIRYQNDDRVKMIVLLGEVG-GVEEYKIVDLLKQKKVTK 738
Cdd:pfam00549    1 LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVLGyGACEDPAGGLLKAIKEAR 80
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 17551266    739 ----PLVAWCIGTCADHITsevQFGHAGASANALGETAACKNAALRASGAL 785
Cdd:pfam00549   81 arelPVVARVCGTEADPQG---RSGQAKALAESGVLIASSNNQALRAAGAV 128
cit_synth_II TIGR01800
2-methylcitrate synthase/citrate synthase II; Members of this family are dimeric enzymes with ...
883-1080 2.01e-11

2-methylcitrate synthase/citrate synthase II; Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.


Pssm-ID: 130859  Cd Length: 368  Bit Score: 67.00  E-value: 2.01e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266    883 PPHANKFIEICLMLTADHG-PAVSGAhnTIVCARAGKDLISSLTSGLLTI-GDRFGGALDGAARQFSEaFDQGWSANQFV 960
Cdd:TIGR01800  163 TKEWEKAMDIALILYAEHEfNASTFA--ARVIASTLSDMYSAITAAIGALkGPLHGGANEAVMAMLDE-IGDPDKAEAWI 239
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266    961 SEMRKKGKHIMGIGHRVksINNPDKRVEILKRFAmdkKEFAQETP---LFEYALEVEKITTAKKpNLILNVDGAIAILFV 1037
Cdd:TIGR01800  240 RKALENKERIMGFGHRV--YKTYDPRAKILKEYA---KKLSAKEGsskWYEIAERLEDVMEEEK-GIYPNVDFFSASVYY 313
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 17551266   1038 DILRHSGMFTKqeaeetieigslngLFVLGRSIGFIGHYLDQS 1080
Cdd:TIGR01800  314 MMGIPTDLFTP--------------IFAMSRVTGWTAHIIEQV 342
SucC COG0045
Succinyl-CoA synthetase, beta subunit [Energy production and conversion]; Succinyl-CoA ...
66-416 3.74e-11

Succinyl-CoA synthetase, beta subunit [Energy production and conversion]; Succinyl-CoA synthetase, beta subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 439815 [Multi-domain]  Cd Length: 388  Bit Score: 66.23  E-value: 3.74e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   66 RGKLGLVKI-GTPQELKA----WFEKTgdsyVRVGQT--EGRL-HTFIVEPFCAHteKDEMYIAI----YSERFrdVIMF 133
Cdd:COG0045   54 RGKAGGVKLaKSPEEAREaaeeILGMT----LVTHQTgpKGKPvNKVLVEEGVDI--AKELYLSIlldrATRRP--VIMA 125
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  134 YEQGGVDIgdvEEKART-----VSVPVqlnENAMTPSDEELTTLLGPLK-DSDIVRRFV---VELYKAYKDLHFTYLEIN 204
Cdd:COG0045  126 STEGGMDI---EEVAEEtpekiIKVPI---DPLVGLQPYQARELAFALGlPGKQVKQFAkilKKLYRAFVEKDASLVEIN 199
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  205 PFVLL-NNQIHVLDlaAR--LDETANFlcadkwksRLtpyggPNHVEFpapfgRDLTSEEQ-----------YIsEMDak 270
Cdd:COG0045  200 PLVVTkDGRLVALD--AKvnFDDNALF--------RH-----PELAAL-----RDLSEEDPleveaskyglnYV-KLD-- 256
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  271 tgaslkltilnrkGRVWTMVAGGG---ASVvftDTVCDLGGasELANYGEYSGDPSESQTYEYAKTLLSvmtegtprpDG 347
Cdd:COG0045  257 -------------GNIGCMVNGAGlamATM---DIIKLAGG--EPANFLDVGGGATAERVAEAFKIILS---------DP 309
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17551266  348 KVLIIggsianFTNVaktFGGIVR----AfETFVSKLKEHKVT--IFVRRGGPNYQEGLRRIKDAAtkleLPIHV 416
Cdd:COG0045  310 NVKAI------LVNI---FGGITRcdvvA-EGIVAALKEVGLKvpVVVRLEGTNVEEGRKILAESG----LNIIA 370
CoA_binding smart00881
CoA binding domain; This domain has a Rossmann fold and is found in a number of proteins ...
492-601 9.62e-05

CoA binding domain; This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.


Pssm-ID: 214881 [Multi-domain]  Cd Length: 100  Bit Score: 42.50  E-value: 9.62e-05
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266     492 LFEDDTKAIIWGQQAKAIQgMLDFDYVCRRSSPSVVAstYPFTGDNKQKYYFGqkeilIPAYKSMAKA-FATHPDASIMv 570
Cdd:smart00881    1 LLNPNTSVAVVGASGNLGS-FGLAVMRNLLEYGTKFV--GGVYPGKVGPKVDG-----VPVYDSVAEApEETGVDVAVI- 71
                            90       100       110
                    ....*....|....*....|....*....|.
gi 17551266     571 tFASMRSVFETVLEALEFPqIKVIAIIAEGV 601
Cdd:smart00881   72 -FVPAEAAPDAIDEAIEAG-IKGIVVITEGI 100
 
Name Accession Description Interval E-value
PLN02522 PLN02522
ATP citrate (pro-S)-lyase
492-1097 0e+00

ATP citrate (pro-S)-lyase


Pssm-ID: 178137 [Multi-domain]  Cd Length: 608  Bit Score: 904.96  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   492 LFEDDTKAIIWGQQAKAIQGMLDFDYVCRRSSPSVVASTYPfTGDNKQKYYFGQKEILIPAYKSMAKAFATHPDASIMVT 571
Cdd:PLN02522    6 LFSRTTQALFYNYKQLPVQRMLDFDFLCGRETPSVAGIINP-GSEGFQKLFFGQEEIAIPVHGSIEAACKAHPTADVFIN 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   572 FASMRSVFETVLEALEFPQIKVIAIIAEGVPENQTRKLLKIAHDRGVTLVGPATVGGIKPGCFKIGNTGGMMDNILASKL 651
Cdd:PLN02522   85 FASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKVVIGPATVGGIQAGAFKIGDTAGTLDNIIQCKL 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   652 YRPGSVAYVSRSGGMSNELNNIISQNTNGVYEGIAIGGDRYPGSTYTDHVIRYQNDDRVKMIVLLGEVGGVEEYKIVDLL 731
Cdd:PLN02522  165 YRPGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEYSLVEAL 244
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   732 KQKKVTKPLVAWCIGTCADHITSEVQFGHAGASANALGETAACKNAALRASGALVPESFDDLGNKIRQTYDELVSQQIIV 811
Cdd:PLN02522  245 KQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAIVPTSFEALEAAIKETFEKLVEEGKII 324
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   812 PQPEVPPPAVPMDYAWARELGLIRKPASFMTSICDERGEELNYAGVPITKVLESDMGIGGVLGLLWFQKRLPPHANKFIE 891
Cdd:PLN02522  325 PVKEVTPPQIPEDLNSAIKSGKVRAPTHIVSTISDDRGEEPCYAGVPMSSIIEKDYGVGDVISLLWFKRSLPRYCTKFIE 404
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   892 ICLMLTADHGPAVSGAHNTIVCARAGKDLISSLTSGLLTIGDRFGGALDGAARQFSEAFDQGWSANQFVSEMRKKGKHIM 971
Cdd:PLN02522  405 MCIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLTPYEFVEGMKKKGIRVP 484
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   972 GIGHRVKSINNPDKRVEILKRFAMDkkeFAQETPLFEYALEVEKITTAKKPNLILNVDGAIAILFVDILRHSGMFTKQEA 1051
Cdd:PLN02522  485 GIGHRIKSRDNRDKRVELLQKYART---HFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEI 561
                         570       580       590       600
                  ....*....|....*....|....*....|....*....|....*.
gi 17551266  1052 EETIEIGSLNGLFVLGRSIGFIGHYLDQSRLKQGLYRHPWDDISYI 1097
Cdd:PLN02522  562 DEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYT 607
PLN02235 PLN02235
ATP citrate (pro-S)-lyase
1-431 4.85e-118

ATP citrate (pro-S)-lyase


Pssm-ID: 177879 [Multi-domain]  Cd Length: 423  Bit Score: 370.64  E-value: 4.85e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266     1 MSAKAVSELSGKEVLYKYFEP-SGLLSAPHAFHVKAGENFDEIANKYEWLArDNKGVIKPDQLIKRRGKLGLVKIGTPQE 79
Cdd:PLN02235    1 MARKKIREYDSKRLLKEHLKRlAGIDLPIRSAQVTESTDFNELANKEPWLS-STKLVVKPDMLFGKRGKSGLVALNLDLA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266    80 LKAWF--EKTGDSyVRVGQTEGRLHTFIVEPFCAHteKDEMYIAIYSERFRDVIMFYEQGGVDIGDVEEKARTVSVPVql 157
Cdd:PLN02235   80 QVATFvkERLGKE-VEMGGCKGPITTFIVEPFVPH--DQEFYLSIVSDRLGCSISFSECGGIEIEENWDKVKTIFLPT-- 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   158 nENAMTPsdEELTTLLG--PLKDSDIVRRFVVELYKAYKDLHFTYLEINPFVLLNNQIHVLDLAARLDETANFLCADKWk 235
Cdd:PLN02235  155 -EAPLTS--EICAPLIAtlPLEIRGKIEEFIKGVFAVFQDLDFTFLEMNPFTLVDGEPYPLDMRGELDDTAAFKNFKKW- 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   236 srltpyggpNHVEFPAPFGRDLTSEEQYISEMDAKTGASLKLTILNRKGRVWTMVAGGGASVVFTDTVCDLGGASELANY 315
Cdd:PLN02235  231 ---------GNIEFPLPFGRVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNY 301
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   316 GEYSGDPSESQTYEYAKTLLSVmteGTPRPDGK--VLIIGGSIANFTNVAKTFGGIVRAFETFVSKLKEHKVTIFVRRGG 393
Cdd:PLN02235  302 AEYSGAPNEEEVLQYARVVIDC---ATANPDGRkrALLIGGGIANFTDVAATFNGIIRALREKESKLKAARMHIFVRRGG 378
                         410       420       430
                  ....*....|....*....|....*....|....*...
gi 17551266   394 PNYQEGLRRIKDAATKLELPIHVFGPETHMTAIVGAAL 431
Cdd:PLN02235  379 PNYQKGLAKMRALGEEIGVPIEVYGPEATMTGICKQAI 416
Citrate_bind pfam16114
ATP citrate lyase citrate-binding; This is the citrate-binding domain of ATP citrate lyase. ...
255-432 8.34e-114

ATP citrate lyase citrate-binding; This is the citrate-binding domain of ATP citrate lyase. This domain has a Rossmann fold.


Pssm-ID: 465025  Cd Length: 178  Bit Score: 350.02  E-value: 8.34e-114
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266    255 RDLTSEEQYISEMDAKTGASLKLTILNRKGRVWTMVAGGGASVVFTDTVCDLGGASELANYGEYSGDPSESQTYEYAKTL 334
Cdd:pfam16114    1 RELSPEEAYIAELDAKTGASLKLTILNPKGRIWTMVAGGGASVVYADTIADLGGASELANYGEYSGAPSETQTYEYAKTI 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266    335 LSVMTEgTPRPDGKVLIIGGSIANFTNVAKTFGGIVRAFETFVSKLKEHKVTIFVRRGGPNYQEGLRRIKDAATKLELPI 414
Cdd:pfam16114   81 LDLMTR-EPHPDGKVLIIGGGIANFTDVAATFKGIIRALREYKSKLKEHKVKIWVRRGGPNYQEGLRAMRALGEELGLPI 159
                          170
                   ....*....|....*...
gi 17551266    415 HVFGPETHMTAIVGAALG 432
Cdd:pfam16114  160 HVYGPETHMTGIVPMALG 177
CCL_ACL-C cd06100
Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase ...
856-1096 2.00e-87

Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ACL catalyzes an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. In fungi, yeast, plants, and animals ACL is cytosolic and generates AcCoA for lipogenesis. ACL may be required for fruiting body maturation in the filamentous fungus Sordaria macrospore. In several groups of autotrophic prokaryotes and archaea, ACL carries out the citrate-cleavage reaction of the reductive tricarboxylic acid (rTCA) cycle. In the family Aquificaceae this latter reaction in the rTCA cycle is carried out via a two enzyme system the second enzyme of which is CCL; the first enzyme is citryl-CoA synthetase (CCS) which is not included in this group. Chlorobium limicola ACL is an example of a two-subunit type ACL. It is comprised of a large and a small subunit; it has been speculated that the large subunit arose from a fusion of the small subunit of the two subunit CCS with CCL. The small ACL subunit is a homolog of the larger CCS subunit. Mammalian ACL is of the single-subunit type and may have arisen from the two-subunit ACL by another gene fusion. Mammalian ACLs are homotetramers; the ACLs of C. limicola and Arabidopsis are a heterooctomers (alpha4beta4). In cancer cells there is a shift in energy metabolism to aerobic glycolysis, the glycolytic end product pyruvate enters a truncated TCA cycle generating citrate which is cleaved in the cytosol by ACL. Inhibiting ACL limits the in-vitro proliferation and survival of these cancer cells, reduces in vivo tumor growth, and induces differentiation.


Pssm-ID: 99854 [Multi-domain]  Cd Length: 227  Bit Score: 281.38  E-value: 2.00e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  856 GVPITKVLEsDMGIGGVLGLLWFQKRLPPHANKFIEICLMLTADHGPAVSGAHNTIVCARAG-KDLISSLTSGLLTIGDR 934
Cdd:cd06100    1 GYDLSDLIG-KISFGDVLYLLLKGRLPTPYEARLLEALLVALADHGPATPSAHAARLTASAGpEDLQSAVAAGLLGIGDR 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  935 FGGALDGAARQFSEAFDQG----WSANQFVSEMRKKGKHIMGIGHRVKSinNPDKRVEILKRFAmdkKEFAQETPLFEYA 1010
Cdd:cd06100   80 FGGAGEGAARLFKEAVDSGdaldAAAAEFVAEYRAAKKRIPGFGHPVHK--NPDPRVPRLLELA---RELGPAGPHLDYA 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266 1011 LEVEKITTAKKP-NLILNVDGAIAILFVDIlrhsGMFTkqeaeetieiGSLNGLFVLGRSIGFIGHYLDQSRLKQGLYRH 1089
Cdd:cd06100  155 LAVEKALTAAKGkPLPLNVDGAIAAILLDL----GFPP----------GALRGLFVLGRSPGLIAHALEEKRLGQPLYRH 220

                 ....*..
gi 17551266 1090 PWDDISY 1096
Cdd:cd06100  221 PWDDIEY 227
SucD COG0074
Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]; Succinyl-CoA ...
526-801 4.13e-45

Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]; Succinyl-CoA synthetase, alpha subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 439844 [Multi-domain]  Cd Length: 288  Bit Score: 164.46  E-value: 4.13e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  526 VVASTYPFTGdnkqkyyfGQKEILIPAYKSMAKAF-ATHPDASIMvtFASMRSVFETVLEALEfPQIKVIAIIAEGVPEN 604
Cdd:COG0074   34 VVAGVTPGKG--------GQTVLGVPVFDTVAEAVeETGADASVI--FVPPPFAADAILEAID-AGIKLIVCITEGIPVL 102
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  605 QTRKLLKIAHDRGVTLVGPATVGGIKPGCFKIGntggmmdnILASKLYRPGSVAYVSRSGGMSNELNNIISQNTNGVYEG 684
Cdd:COG0074  103 DMVRVKRYAKAKGTRLIGPNCPGIITPGECKLG--------IMPGHIFKPGRVGIVSRSGTLTYEAVWQLTQAGLGQSTC 174
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  685 IAIGGDRYPGSTYTDHVIRYQNDDRVKMIVLLGEVGGVEEYKIVDLLKqKKVTKPLVAWCIGTCAdhiTSEVQFGHAGAS 764
Cdd:COG0074  175 VGIGGDPIIGTSFIDVLELFEEDPETEAIVMIGEIGGSAEEEAAEYIK-ENMTKPVVAYIAGRTA---PPGKRMGHAGAI 250
                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 17551266  765 ANALGETAACKNAALRASGALVPESFDDLGNKIRQTY 801
Cdd:COG0074  251 ISGGKGTAESKIEALEAAGVPVAESPSEIGELLKKAL 287
Ligase_CoA pfam00549
CoA-ligase; This family includes the CoA ligases Succinyl-CoA synthetase alpha and beta chains, ...
660-785 1.46e-35

CoA-ligase; This family includes the CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate CoA ligase and ATP-citrate lyase. Some members of the family utilize ATP others use GTP.


Pssm-ID: 395434 [Multi-domain]  Cd Length: 128  Bit Score: 131.23  E-value: 1.46e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266    660 VSRSGGMSNELNNIISQNTNGVYEGIAIGGDRYPGSTYTDHVIRYQNDDRVKMIVLLGEVG-GVEEYKIVDLLKQKKVTK 738
Cdd:pfam00549    1 LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVLGyGACEDPAGGLLKAIKEAR 80
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 17551266    739 ----PLVAWCIGTCADHITsevQFGHAGASANALGETAACKNAALRASGAL 785
Cdd:pfam00549   81 arelPVVARVCGTEADPQG---RSGQAKALAESGVLIASSNNQALRAAGAV 128
PTZ00187 PTZ00187
succinyl-CoA synthetase alpha subunit; Provisional
550-805 7.07e-32

succinyl-CoA synthetase alpha subunit; Provisional


Pssm-ID: 240307 [Multi-domain]  Cd Length: 317  Bit Score: 127.14  E-value: 7.07e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   550 IPAYKSMAKAF-ATHPDASimVTFASMRSVFETVLEALEfPQIKVIAIIAEGVPENQTRKLLKIAHDRGVT-LVGPATVG 627
Cdd:PTZ00187   74 LPVFATVKEAKkATGADAS--VIYVPPPHAASAIIEAIE-AEIPLVVCITEGIPQHDMVKVKHALLSQNKTrLIGPNCPG 150
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   628 GIKPGCFKIGntggmmdnILASKLYRPGSVAYVSRSGGMSNELNNIISQNTNGVYEGIAIGGDRYPGSTYTDHVIRYQND 707
Cdd:PTZ00187  151 IIKPGECKIG--------IMPGHIHKKGKIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLND 222
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   708 DRVKMIVLLGEVGGVEEYKIVDLLKQKKVTKPLVAWCIGTCAdhiTSEVQFGHAGASANALGETAACKNAALRASGALVP 787
Cdd:PTZ00187  223 PETEGIILIGEIGGTAEEEAAEWIKNNPIKKPVVSFIAGITA---PPGRRMGHAGAIISGGKGTAPGKIEALEAAGVRVV 299
                         250
                  ....*....|....*...
gi 17551266   788 ESFDDLGNKIRQTYDELV 805
Cdd:PTZ00187  300 KSPAQLGKTMLEVMKKKG 317
PRK05678 PRK05678
succinyl-CoA synthetase subunit alpha; Validated
544-804 9.11e-29

succinyl-CoA synthetase subunit alpha; Validated


Pssm-ID: 180194 [Multi-domain]  Cd Length: 291  Bit Score: 117.20  E-value: 9.11e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   544 GQKEILIPAYKSMAKAF-ATHPDASimVTFASMRSVFETVLEALEfPQIKVIAIIAEGVPENQTRKLLKIAHDRGVTLVG 622
Cdd:PRK05678   45 GTTVLGLPVFNTVAEAVeATGANAS--VIYVPPPFAADAILEAID-AGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIG 121
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   623 PATVGGIKPGCFKIGntggmmdnILASKLYRPGSVAYVSRSGGMSNELNNIISQNTNGVYEGIAIGGDRYPGSTYTDHVI 702
Cdd:PRK05678  122 PNCPGIITPGECKIG--------IMPGHIHKKGRVGVVSRSGTLTYEAVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLE 193
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   703 RYQNDDRVKMIVLLGEVGGVEEYKIVDLLKQkKVTKPLVAWCIGTCAdhiTSEVQFGHAGASANALGETAACKNAALRAS 782
Cdd:PRK05678  194 AFEEDPETEAIVMIGEIGGSAEEEAAEYIKA-NVTKPVVGYIAGVTA---PPGKRMGHAGAIISGGKGTAEEKKEALEAA 269
                         250       260
                  ....*....|....*....|..
gi 17551266   783 GALVPESFDDLGNKIRQTYDEL 804
Cdd:PRK05678  270 GVKVARTPSEIGELLKEVLKGL 291
PLN00125 PLN00125
Succinyl-CoA ligase [GDP-forming] subunit alpha
544-803 8.68e-25

Succinyl-CoA ligase [GDP-forming] subunit alpha


Pssm-ID: 215066 [Multi-domain]  Cd Length: 300  Bit Score: 106.20  E-value: 8.68e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   544 GQKEILIPAYKSMAKAFA-THPDASIMVTFASMRSvfETVLEALEfPQIKVIAIIAEGVPENQTRKLLKIAHDRGVT-LV 621
Cdd:PLN00125   49 GTEHLGLPVFNTVAEAKAeTKANASVIYVPPPFAA--AAILEAME-AELDLVVCITEGIPQHDMVRVKAALNRQSKTrLI 125
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   622 GPATVGGIKPGCFKIGntggmmdnILASKLYRPGSVAYVSRSGGMSNELnniISQNTN---GVYEGIAIGGDRYPGSTYT 698
Cdd:PLN00125  126 GPNCPGIIKPGECKIG--------IMPGYIHKPGRIGIVSRSGTLTYEA---VFQTTAvglGQSTCVGIGGDPFNGTNFV 194
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   699 DHVIRYQNDDRVKMIVLLGEVGGVEEYKIVDLLKQKKVTKPLVAWCIGTCAdhiTSEVQFGHAGASANALGETAACKNAA 778
Cdd:PLN00125  195 DCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGTEKPVVAFIAGLTA---PPGRRMGHAGAIVSGGKGTAQDKIKA 271
                         250       260
                  ....*....|....*....|....*
gi 17551266   779 LRASGALVPESFDDLGNKIRQTYDE 803
Cdd:PLN00125  272 LREAGVTVVESPAKIGVAMLEVFKE 296
Citrate_synt pfam00285
Citrate synthase, C-terminal domain; This is the long, C-terminal part of the enzyme.
876-1079 8.99e-23

Citrate synthase, C-terminal domain; This is the long, C-terminal part of the enzyme.


Pssm-ID: 459747 [Multi-domain]  Cd Length: 357  Bit Score: 101.43  E-value: 8.99e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266    876 LWFQKRLPPHANKFIEICLMLTADHGPAVSgAHNTIVCARAGKDLISSLTSGLLTI-GDRFGGALDGAARQFSEAFDQGw 954
Cdd:pfam00285  156 MLFGYEPDPEEARALDLYLILHADHEGNAS-TFTARVVASTLADPYSAIAAAIGALkGPLHGGANEAVLEMLEEIGSPD- 233
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266    955 SANQFVSEMRKKGK-HIMGIGHRV-KsinNPDKRVEILKRFAMDKKEFAQETPLFEYALEVEKIT----TAKKPNLILNV 1028
Cdd:pfam00285  234 EVEEYIRKVLNKGKeRIMGFGHRVyK---NYDPRAKILKEFAEELAEEGGDDPLLELAEELEEVApedlYFVEKNLYPNV 310
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 17551266   1029 DGAIAIlfvdILRHSG----MFTkqeaeetieigslnGLFVLGRSIGFIGHYLDQ 1079
Cdd:pfam00285  311 DFYSGV----LYHALGiptdMFT--------------PLFAISRTAGWLAHWIEQ 347
CS_ACL-C_CCL cd06099
Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit ...
888-1079 2.52e-22

Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) from citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. Some CS proteins function as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. CCL cleaves citryl-CoA (CiCoA) to AcCoA and OAA. ACLs catalyze an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA; they do this in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate CiCoA, and c) the hydrolysis of CiCoA to produce citrate and CoA. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some type II CSs are strongly and specifically inhibited by NADH through an allosteric mechanism. In fungi, yeast, plants, and animals ACL is cytosolic and generates AcCoA for lipogenesis. In several groups of autotrophic prokaryotes and archaea, ACL carries out the citrate-cleavage reaction of the reductive tricarboxylic acid (rTCA) cycle. In the family Aquificaceae this latter reaction in the rTCA cycle is carried out via a two enzyme system the second enzyme of which is CCL.


Pssm-ID: 99853 [Multi-domain]  Cd Length: 213  Bit Score: 96.25  E-value: 2.52e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  888 KFIEICLMLTADHGPAVSgAHNTIVCARAGKDLISSLTSGLLTI-GDRFGGALDGAARQFSE-AFDQGWSANQFVSEMRK 965
Cdd:cd06099   21 RAMDLALILHADHEGNAS-TFTARVVGSTGSDPYSAIAAAIGALkGPLHGGANEAVLKMLEEiGTPKNEPAEAYIRKKLE 99
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  966 KGKHIMGIGHRVKSinNPDKRVEILKRFAMDKKEFAQETPLFEYALEVEKITTAKKP--NLILNVDGAIAILFVDILRHS 1043
Cdd:cd06099  100 SKRVIMGFGHRVYK--KYDPRATVLKKFAEELLKEDGDDPMFELAAELEKIAEEVLYekKLYPNVDFYSGVLYKAMGFPT 177
                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 17551266 1044 GMFTkqeaeetieigslnGLFVLGRSIGFIGHYLDQ 1079
Cdd:cd06099  178 ELFT--------------PLFAVARAVGWLAHLIEQ 199
citrate_synt cd06101
Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate ...
842-1088 6.88e-22

Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and form homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some type II CSs are strongly and specifically inhibited by NADH through an allosteric mechanism. This subgroup includes both gram-positive and gram-negative bacteria.


Pssm-ID: 99855 [Multi-domain]  Cd Length: 265  Bit Score: 96.61  E-value: 6.88e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  842 TSICDERGEE--LNYAGVPItKVLESDMGIGGVLGLLWFQKrLPPHANKF----------------IEICLMLTADHGPA 903
Cdd:cd06101   11 SEISVIDGDEggLRYRGYPI-EELAENSSFEEVAYLLLTGE-LPSYAENFlymlggeepdpefakaMDLALILHADHEGN 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  904 VSgAHNTIVCARAGKDLISSLTSGLLTI-GDRFGGALDGAARQFSE--------AFDQGWSAnqfvsemRKKGKHIMGIG 974
Cdd:cd06101   89 AS-TFTARVVGSTLSDPYSAIAAAIAALkGPLHGGANEAVLKMLEEigtpknepAEAYIRKK-------LNSKRVLMGFG 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  975 HRVKSinNPDKRVEILKRFAMDKKEFAQETPLFEYALEVEKITTAKKP--NLILNVDGAIAILFVDILRHSGMFTKqeae 1052
Cdd:cd06101  161 HRVYK--KYDPRATVLKKFAEKLLKEKGLDPMFELAAELEKIAPEVLYekKLYPNVDFYSGVLYKAMGFPTELFTP---- 234
                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 17551266 1053 etieigslngLFVLGRSIGFIGHYLDQSRLKQGLYR 1088
Cdd:cd06101  235 ----------LFAVSRAVGWLAHLIEQREDGQRIIR 260
PRK06224 PRK06224
citryl-CoA lyase;
842-1081 1.30e-19

citryl-CoA lyase;


Pssm-ID: 235748 [Multi-domain]  Cd Length: 263  Bit Score: 89.93  E-value: 1.30e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   842 TSICDERGEELNYAGVPITKVLESdMGIGGVLGLLWFQKRLPPHANKFIEICLMLTADHGPAVSgahntIVCAR----AG 917
Cdd:PRK06224   11 TSISDVTPEEIYVRGYDLEDLIGK-LSFTDMIFLLLRGRLPTPNEARLLDAVLVALVDHGLTPS-----AAAARmtasGG 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   918 KDLISSLTSGLLTIGDRFGGALDGAARQFSEAFDQGWS-------ANQFVSEMRKKGKHIMGIGHRVKSINNPdkRVEIL 990
Cdd:PRK06224   85 ESLQGAVAAGLLALGSVHGGAGEQAAELLQEIAAAADAgadldaaARAIVAEYRAAGKRVPGFGHPLHKPVDP--RAPRL 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   991 krfamdkKEFAQETPLF----EYALEVEK-ITTAKKPNLILNVDGAIAILFVDIlrhsGmftkqeaeetIEIGSLNGLFV 1065
Cdd:PRK06224  163 -------LALAREAGVAgrhcRLAEALEAaLAAAKGKPLPLNVDGAIAAILADL----G----------FPPALARGLFV 221
                         250
                  ....*....|....*.
gi 17551266  1066 LGRSIGFIGHYLDQSR 1081
Cdd:PRK06224  222 ISRAAGLVAHVWEELQ 237
citrate_synt_like_1 cd06118
Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate ...
888-1088 1.70e-17

Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some type II CSs are strongly and specifically inhibited by NADH through an allosteric mechanism.


Pssm-ID: 99871 [Multi-domain]  Cd Length: 358  Bit Score: 85.35  E-value: 1.70e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  888 KFIEICLMLTADHGPAVSgAHNTIVCARAGKDLISSLTSGLLTI-GDRFGGALDGAARQFSEAFDQGwSANQFVSEMRKK 966
Cdd:cd06118  168 KAMDLALILHADHEGNAS-TFTARVVASTLSDMYSAIAAAIAALkGPLHGGANEAVLKMLLEIGTPE-NVEAYIWKKLAN 245
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  967 GKHIMGIGHRVKSinNPDKRVEILKRFAMDKKEFAQETPLFEYALEVEKITTAKKP--NLILNVDGAIAILFVDILRHSG 1044
Cdd:cd06118  246 KRRIMGFGHRVYK--TYDPRAKILKELAEELAEEKGDDKLFEIAEELEEIALEVLGekGIYPNVDFYSGVVYKALGFPTE 323
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 17551266 1045 MFTKqeaeetieigslngLFVLGRSIGFIGHYLDQSRLKQGLYR 1088
Cdd:cd06118  324 LFTP--------------LFAVSRAVGWLAHIIEYRENNQRLIR 353
GltA COG0372
Citrate synthase [Energy production and conversion]; Citrate synthase is part of the Pathway ...
891-1088 4.45e-15

Citrate synthase [Energy production and conversion]; Citrate synthase is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 440141 [Multi-domain]  Cd Length: 387  Bit Score: 78.60  E-value: 4.45e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  891 EICLMLTADHGPAVSgAHNTIVCARAGKDLISSLTSGLLTI-GDRFGGALDGAARQFsEAFDQGWSANQFVSEMRKKGKH 969
Cdd:COG0372  185 DLLLILHADHEQNAS-TFTARVVASTLADLYSAIAAAIGALkGPLHGGANEAVLEML-EEIGSPDNVEEYIRKALDKKER 262
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  970 IMGIGHRV-KsinNPDKRVEILKRFAmdkKEFAQET---PLFEYALEVEKITTAKKP----NLILNVDGAIAIlfvdILR 1041
Cdd:COG0372  263 IMGFGHRVyK---NYDPRAKILKEAA---EELLEELgddPLLEIAEELEEVALEDEYfiekKLYPNVDFYSGI----VYH 332
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 17551266 1042 HSG----MFTkqeaeetieigslnGLFVLGRSIGFIGHYLDQsRLKQGLYR 1088
Cdd:COG0372  333 ALGiptdMFT--------------PIFAISRVAGWIAHWLEQ-RADNRIIR 368
CoA_binding pfam02629
CoA binding domain; This domain has a Rossmann fold and is found in a number of proteins ...
496-600 1.13e-11

CoA binding domain; This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.


Pssm-ID: 396961 [Multi-domain]  Cd Length: 97  Bit Score: 62.22  E-value: 1.13e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266    496 DTKAIIWGQQAKAIQGM-LDFDYVCRRSSPSVVASTYPFTGDNKQkyyfgqkeiLIPAYKSMAKAFATHpDASIMVTFAS 574
Cdd:pfam02629    3 DTKVIVIGAGGLGIQGLnYHFIQMLGYGIKMVFGVNPGKGGTEIL---------GIPVYNSVDELEEKT-GVDVAVITVP 72
                           90       100
                   ....*....|....*....|....*.
gi 17551266    575 MRSVFETVLEALEfPQIKVIAIIAEG 600
Cdd:pfam02629   73 APFAQEAIDELVD-AGIKGIVNITPG 97
cit_synth_II TIGR01800
2-methylcitrate synthase/citrate synthase II; Members of this family are dimeric enzymes with ...
883-1080 2.01e-11

2-methylcitrate synthase/citrate synthase II; Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.


Pssm-ID: 130859  Cd Length: 368  Bit Score: 67.00  E-value: 2.01e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266    883 PPHANKFIEICLMLTADHG-PAVSGAhnTIVCARAGKDLISSLTSGLLTI-GDRFGGALDGAARQFSEaFDQGWSANQFV 960
Cdd:TIGR01800  163 TKEWEKAMDIALILYAEHEfNASTFA--ARVIASTLSDMYSAITAAIGALkGPLHGGANEAVMAMLDE-IGDPDKAEAWI 239
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266    961 SEMRKKGKHIMGIGHRVksINNPDKRVEILKRFAmdkKEFAQETP---LFEYALEVEKITTAKKpNLILNVDGAIAILFV 1037
Cdd:TIGR01800  240 RKALENKERIMGFGHRV--YKTYDPRAKILKEYA---KKLSAKEGsskWYEIAERLEDVMEEEK-GIYPNVDFFSASVYY 313
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 17551266   1038 DILRHSGMFTKqeaeetieigslngLFVLGRSIGFIGHYLDQS 1080
Cdd:TIGR01800  314 MMGIPTDLFTP--------------IFAMSRVTGWTAHIIEQV 342
SucC COG0045
Succinyl-CoA synthetase, beta subunit [Energy production and conversion]; Succinyl-CoA ...
66-416 3.74e-11

Succinyl-CoA synthetase, beta subunit [Energy production and conversion]; Succinyl-CoA synthetase, beta subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 439815 [Multi-domain]  Cd Length: 388  Bit Score: 66.23  E-value: 3.74e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   66 RGKLGLVKI-GTPQELKA----WFEKTgdsyVRVGQT--EGRL-HTFIVEPFCAHteKDEMYIAI----YSERFrdVIMF 133
Cdd:COG0045   54 RGKAGGVKLaKSPEEAREaaeeILGMT----LVTHQTgpKGKPvNKVLVEEGVDI--AKELYLSIlldrATRRP--VIMA 125
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  134 YEQGGVDIgdvEEKART-----VSVPVqlnENAMTPSDEELTTLLGPLK-DSDIVRRFV---VELYKAYKDLHFTYLEIN 204
Cdd:COG0045  126 STEGGMDI---EEVAEEtpekiIKVPI---DPLVGLQPYQARELAFALGlPGKQVKQFAkilKKLYRAFVEKDASLVEIN 199
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  205 PFVLL-NNQIHVLDlaAR--LDETANFlcadkwksRLtpyggPNHVEFpapfgRDLTSEEQ-----------YIsEMDak 270
Cdd:COG0045  200 PLVVTkDGRLVALD--AKvnFDDNALF--------RH-----PELAAL-----RDLSEEDPleveaskyglnYV-KLD-- 256
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  271 tgaslkltilnrkGRVWTMVAGGG---ASVvftDTVCDLGGasELANYGEYSGDPSESQTYEYAKTLLSvmtegtprpDG 347
Cdd:COG0045  257 -------------GNIGCMVNGAGlamATM---DIIKLAGG--EPANFLDVGGGATAERVAEAFKIILS---------DP 309
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17551266  348 KVLIIggsianFTNVaktFGGIVR----AfETFVSKLKEHKVT--IFVRRGGPNYQEGLRRIKDAAtkleLPIHV 416
Cdd:COG0045  310 NVKAI------LVNI---FGGITRcdvvA-EGIVAALKEVGLKvpVVVRLEGTNVEEGRKILAESG----LNIIA 370
Ec2MCS_like cd06108
Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of ...
888-1079 3.13e-10

Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MCS, Re 2-MCS2, which is induced on propionate is also found in this group. This group may include proteins which may function exclusively as a CS, those which may function exclusively as a 2MCS, or those with dual specificity which functions as both a CS and a 2MCS.


Pssm-ID: 99861 [Multi-domain]  Cd Length: 363  Bit Score: 63.09  E-value: 3.13e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  888 KFIEICLMLTADHGPAVSgahnTI---VCARAGKDLISSLTSGLLTI-GDRFGGAlDGAARQFSEAFDQGWSANQFVSEM 963
Cdd:cd06108  166 KAMDVSLILYAEHEFNAS----TFaarVTASTLSDFYSAITGAIGTLrGPLHGGA-NEAAMELIERFKSPEEAEQGLLEK 240
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  964 RKKGKHIMGIGHRVKSINNPdkRVEILKRFAMDKKEFAQETPLFEYALEVEKITTAKKpNLILNVD--GAIAILFVDILR 1041
Cdd:cd06108  241 LERKELIMGFGHRVYKEGDP--RSDIIKKWSKKLSEEGGDPLLYQISERIEEVMWEEK-KLFPNLDfySASAYHFCGIPT 317
                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 17551266 1042 HsgMFTKqeaeetieigslngLFVLGRSIGFIGHYLDQ 1079
Cdd:cd06108  318 E--LFTP--------------IFVMSRVTGWAAHIMEQ 339
PLN02456 PLN02456
citrate synthase
879-1076 1.01e-09

citrate synthase


Pssm-ID: 215250 [Multi-domain]  Cd Length: 455  Bit Score: 62.35  E-value: 1.01e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   879 QKRLPPHANKFIEICLMLTADHGPAVSGAHNTIVCARAGKDLISSLTSGLLTI-GDRFGGALDGAARQFSEAfdqGWSAN 957
Cdd:PLN02456  237 SYKPDPRLARLLDLYFIIHADHEGGCSTAAARHLVGSSGVDPYTSVAAGVNALaGPLHGGANEAVLKMLKEI---GTVEN 313
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   958 --QFVSEMRKKGKHIMGIGHRVksINNPDKRVEILKRFAMDKKEFAQETPLFEYALEVEKIT----TAKKPNLILNVDGA 1031
Cdd:PLN02456  314 ipEYVEGVKNSKKVLPGFGHRV--YKNYDPRAKCIREFALEVFKHVGDDPLFKVASALEEVAlldeYFKVRKLYPNVDFY 391
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 17551266  1032 IAIlfvdILRHSG----MFTKqeaeetieigslngLFVLGRSIGFIGHY 1076
Cdd:PLN02456  392 SGV----LLRALGfpeeFFTV--------------LFAVSRAAGYLSQW 422
BsCS-I_like cd06109
Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl ...
802-1081 1.32e-09

Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-I has a lower catalytic activity than BsCS-II, and has a Glu in place of a key catalytic Asp residue. This change is conserved in other members of this group. For E. coli CS (not included in this group), site directed mutagenesis of the key Asp residue to a Glu converts the enzyme into citryl-CoA lyase which cleaves citryl-CoA to AcCoA and OAA. A null mutation in the gene encoding BsCS-I (citA) had little effect on B. subtilis CS activity or on sporulation. However, disruption of the citA gene in a strain null for the gene encoding BsCS-II resulted in a sporulation deficiency, a characteristic of strains defective in the Krebs cycle. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. Many of the gram-negative species represented in this group have a second CS isozyme which is in another group.


Pssm-ID: 99862 [Multi-domain]  Cd Length: 349  Bit Score: 61.17  E-value: 1.32e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  802 DELVSQQIIVP-QPEVPPPAVPMDYAWARELG---------------LIRKPASFMTSICD-ERGEElnyagvPItkvlE 864
Cdd:cd06109   62 AALAAARALPDvVAALLPALAGLDPMDALRALlallpdspdlatalrLLAAAPVITAALLRlSRGKQ------PI----A 131
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  865 SDMGIGGVLGLLWFQKRLPPHANKF--IEICLMLTADHGPAVSgAHNTIVCARAGKDLISSLTSGLLTI-GDRFGGALDG 941
Cdd:cd06109  132 PDPSLSHAADYLRMLTGEPPSEAHVraLDAYLVTVADHGMNAS-TFTARVIASTEADLTSAVLGAIGALkGPLHGGAPGP 210
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  942 AARQFSEAFDQGwSANQFVSEMRKKGKHIMGIGHRVKSINNPdkRVEILKRFAmdkKEFAQETPLFEYALEVEKITTA-- 1019
Cdd:cd06109  211 VLDMLDAIGTPE-NAEAWLREALARGERLMGFGHRVYRVRDP--RADVLKAAA---ERLGAPDERLEFAEAVEQAALAll 284
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17551266 1020 --KKPN--LILNVDGAIAIL--FVDILRhsGMFTkqeaeetieigslnGLFVLGRSIGFIGHYLDQSR 1081
Cdd:cd06109  285 reYKPGrpLETNVEFYTALLleALGLPR--EAFT--------------PTFAAGRTAGWTAHVLEQAR 336
BSuCS-II_like cd06110
Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl ...
884-1079 5.36e-09

Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, all of which are characteristic of strains defective in the Krebs cycle. Streptococcus mutans CS, found in this group, may participate in a pathway for the anaerobic biosynthesis of glutamate. This group also contains functionally uncharacterized CSs of various gram-negative bacteria. Some of the gram-negative species represented in this group have a second CS isozyme found in another group. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS.


Pssm-ID: 99863 [Multi-domain]  Cd Length: 356  Bit Score: 59.21  E-value: 5.36e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  884 PHANKFIEICLMLTADHGPAVSgAHNTIVCARAGKDLISSLTSGLLTI-GDRFGGALDGAARQFSEaFDQGWSANQFVSE 962
Cdd:cd06110  164 EEAARAFDVALILHADHELNAS-TFAARVVASTLSDMYSAVTAAIGALkGPLHGGANERVMKMLLE-IGSVDNVAAYVKD 241
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  963 MRKKGKHIMGIGHRVksINNPDKRVEILKRFAMDKKEFAQETPLFEYALEVEKITTAKKpNLILNVDGAIAILF------ 1036
Cdd:cd06110  242 KLANKEKIMGFGHRV--YKTGDPRAKHLREMSRRLGKETGEPKWYEMSEAIEQAMRDEK-GLNPNVDFYSASVYymlgip 318
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 17551266 1037 VDIlrhsgmFTKqeaeetieigslngLFVLGRSIGFIGHYLDQ 1079
Cdd:cd06110  319 VDL------FTP--------------IFAISRVSGWCAHILEQ 341
ATP-grasp_2 pfam08442
ATP-grasp domain;
8-208 3.94e-08

ATP-grasp domain;


Pssm-ID: 400651 [Multi-domain]  Cd Length: 202  Bit Score: 54.57  E-value: 3.94e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266      8 ELSGKEVLYKYfepsGLlSAPHAFHVKAGENFDEIANKYEwlarDNKGVIKPDQLIKRRGKLGLVKI-GTPQELKAWFEK 86
Cdd:pfam08442    4 EYQAKEIFAKY----GI-PVPRGEVATSPEEAEEIAKKLG----GKVYVVKAQVLAGGRGKAGGVKLaKSPEEAKEVAKE 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266     87 TGDSYVRVGQTEGRLHTFIVEPFCAHTE-KDEMYIAIYSERF--RDVIMFYEQGGVDIGDVEEKA--RTVSVPVQLNENA 161
Cdd:pfam08442   75 MLGKNLVTKQTGPDGQPVNKVLVEEALDiKKEYYLSIVLDRAskGPVIIASTEGGVDIEEVAAKNpeKIHKFPIDPLKGL 154
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*...
gi 17551266    162 MTPSDEELTTLLG-PLKDSDIVRRFVVELYKAYKDLHFTYLEINPFVL 208
Cdd:pfam08442  155 TPYQAREIAFKLGlPGELIKQAADIIKKLYKLFVEYDATLVEINPLVE 202
PRK12350 PRK12350
citrate synthase 2; Provisional
883-1082 7.67e-08

citrate synthase 2; Provisional


Pssm-ID: 237070 [Multi-domain]  Cd Length: 353  Bit Score: 55.74  E-value: 7.67e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   883 PPHAnKFIEICLMLTADHGPAVSgAHNTIVCARAGKDLISSLTSGLltigdrfgGALDG------AARQFS--EAFDQGW 954
Cdd:PRK12350  152 PAHV-AALDAYWVSAAEHGMNAS-TFTARVIASTGADVAAALSGAI--------GALSGplhggaPARVLPmlDAVERTG 221
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   955 SANQFVSEMRKKGKHIMGIGHRVKSINNPdkRVEILKRFAmdkKEFAQetPLFEYALEVEKITTA----KKPNLIL--NV 1028
Cdd:PRK12350  222 DARGWVKGALDRGERLMGFGHRVYRAEDP--RARVLRATA---KRLGA--PRYEVAEAVEQAALAelreRRPDRPLetNV 294
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 17551266  1029 DGAIAIL--FVDILRHsgMFTkqeaeetieigslnGLFVLGRSIGFIGHYLDQSRL 1082
Cdd:PRK12350  295 EFWAAVLldFAGVPAH--MFT--------------AMFTCGRTAGWSAHILEQKRT 334
PRK14037 PRK14037
citrate synthase; Provisional
888-1082 8.31e-08

citrate synthase; Provisional


Pssm-ID: 184470  Cd Length: 377  Bit Score: 55.91  E-value: 8.31e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   888 KFIEICLMLTADHG-PAVSGAhnTIVCARAGKDLISSLTSGLLTI-GDRFGGALDGAARQFSEAFDQGWSANQFVSEMRK 965
Cdd:PRK14037  171 KAMDAALILYTDHEvPASTTA--ALVAASTLSDMYSCITAALAALkGPLHGGAAEEAFKQFVEIGDPNNVEMWFNDKIIN 248
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   966 KGKHIMGIGHRVKSINNPdkRVEILKRFAmdkKEFAQETP----LFEYALEVEK--ITTAKKPNLILNVDGAIAILFVDI 1039
Cdd:PRK14037  249 GKKRLMGFGHRVYKTYDP--RAKIFKELA---ETLIERNSeakkYFEIAQKLEElgIKQFGSKGIYPNTDFYSGIVFYAL 323
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 17551266  1040 LRHSGMFTkqeaeetieigslnGLFVLGRSIGFIGHYL----DQSRL 1082
Cdd:PRK14037  324 GFPVYMFT--------------ALFALSRTLGWLAHIIeyveEQHRL 356
PRK14035 PRK14035
citrate synthase; Provisional
894-1081 7.42e-07

citrate synthase; Provisional


Pssm-ID: 184468 [Multi-domain]  Cd Length: 371  Bit Score: 52.84  E-value: 7.42e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   894 LMLTADHGPAVSgAHNTIVCARAGKDLISSLTSGLLTI-GDRFGGALDGAARQFSEAFDQGwSANQFVSEMRKKGKHIMG 972
Cdd:PRK14035  177 LVLHADHELNAS-TFTARCAVSSLSDMYSGVVAAVGSLkGPLHGGANERVMDMLSEIRSIG-DVDAYLDEKFANKEKIMG 254
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   973 IGHRVksINNPDKRVEILKRFAMDKKEFAQETPLFEYALEVEKITTAKKpNLILNVDGAIAILFVDILRHSGMFTKqeae 1052
Cdd:PRK14035  255 FGHRV--YKDGDPRAKYLREMSRKITKGTGREELFEMSVKIEKRMKEEK-GLIPNVDFYSATVYHVMGIPHDLFTP---- 327
                         170       180
                  ....*....|....*....|....*....
gi 17551266  1053 etieigslngLFVLGRSIGFIGHYLDQSR 1081
Cdd:PRK14035  328 ----------IFAVSRVAGWIAHILEQYK 346
gltA PRK05614
citrate synthase;
894-1079 1.79e-06

citrate synthase;


Pssm-ID: 180164  Cd Length: 419  Bit Score: 51.80  E-value: 1.79e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   894 LMLTADHGP----------AVSGAhNTIVCARAGkdlISSLTsglltiGDRFGGALDGAARQFSEaFDQGWSANQFVSEM 963
Cdd:PRK05614  226 FILHADHEQnaststvrlaGSSGA-NPFACIAAG---IAALW------GPAHGGANEAVLKMLEE-IGSVDNIPEFIARA 294
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   964 RKK--GKHIMGIGHRVksINNPDKRVEILKRFAMD-KKEFAQETPLFEYALEVEKITTA------KKpnLILNVDGAIAI 1034
Cdd:PRK05614  295 KDKndGFRLMGFGHRV--YKNYDPRAKIMRETCHEvLKELGLNDPLLEVAMELEEIALNdeyfieRK--LYPNVDFYSGI 370
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 17551266  1035 lfvdILRHSG----MFTkqeaeetieigslnGLFVLGRSIGFIGHYLDQ 1079
Cdd:PRK05614  371 ----ILKALGiptsMFT--------------VIFALARTVGWIAHWNEM 401
PRK14036 PRK14036
citrate synthase; Provisional
884-1079 5.74e-06

citrate synthase; Provisional


Pssm-ID: 237591 [Multi-domain]  Cd Length: 377  Bit Score: 49.96  E-value: 5.74e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   884 PHANKFIEICLMLTADHGPAVSgAHNTIVCAragkdliSSLTSGLLTIGDRFG---GALDGAARQ-FSEAFDQGWSANQ- 958
Cdd:PRK14036  169 PLAARIFDRCLILHAEHTINAS-TFSARVTA-------STLTDPYAVIASAVGtlaGPLHGGANEdVLAMLEEIGSVENv 240
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   959 --FVSEMRKKGKHIMGIGHRVKSINNPdkRVEILKRFAMDKKEFAQETPLFEYALEVEKITTAK-KPNLIL-NVDGAIAI 1034
Cdd:PRK14036  241 rpYLDERLANKQKIMGFGHREYKVKDP--RATILQKLAEELFARFGHDEYYEIALELERVAEERlGPKGIYpNVDFYSGL 318
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 17551266  1035 LFVDILRHSGMFTKqeaeetieigslngLFVLGRSIGFIGHYLDQ 1079
Cdd:PRK14036  319 VYRKLGIPRDLFTP--------------IFAIARVAGWLAHWREQ 349
citrate_synt_like_1_2 cd06113
Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate ...
888-1017 1.58e-05

Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) hydrolysis of citryl-CoA to produce citrate and CoA. CSs are found in two structural types: type I (homodimeric) and type II CSs (homohexameric). Type II CSs are unique to gram-negative bacteria. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria. Type I CS is active as a homodimer, both subunits participating in the active site. Type II CS is a hexamer of identical subunits (approximated as a trimer of dimers). Some type II CSs are strongly and specifically inhibited by NADH through an allosteric mechanism. This subgroup includes both gram-positive and gram-negative bacteria.


Pssm-ID: 99866  Cd Length: 406  Bit Score: 48.80  E-value: 1.58e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266  888 KFIEICLMLTADHGpavsGAHN----TIVCARAGKDLISSLTSGLLTI-GDRFGGALDGAARQFS--EAFDQGWSANQFV 960
Cdd:cd06113  196 KLLDLCLVLHAEHG----GGNNstftTRVVSSSGTDTYSAIAAAIGSLkGPRHGGANIKVMEMLEdiKENVKDWTDEDEV 271
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17551266  961 SE-----MRKK-GKH---IMGIGHRVKSINNPdkRVEILKRFAMD---KKEFAQETPLFEyalEVEKIT 1017
Cdd:cd06113  272 RAylrkiLNKEaFDKsglIYGMGHAVYTLSDP--RAVVLKKYARSlakEKGREEEFALYE---RIERLA 335
CoA_binding smart00881
CoA binding domain; This domain has a Rossmann fold and is found in a number of proteins ...
492-601 9.62e-05

CoA binding domain; This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.


Pssm-ID: 214881 [Multi-domain]  Cd Length: 100  Bit Score: 42.50  E-value: 9.62e-05
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266     492 LFEDDTKAIIWGQQAKAIQgMLDFDYVCRRSSPSVVAstYPFTGDNKQKYYFGqkeilIPAYKSMAKA-FATHPDASIMv 570
Cdd:smart00881    1 LLNPNTSVAVVGASGNLGS-FGLAVMRNLLEYGTKFV--GGVYPGKVGPKVDG-----VPVYDSVAEApEETGVDVAVI- 71
                            90       100       110
                    ....*....|....*....|....*....|.
gi 17551266     571 tFASMRSVFETVLEALEFPqIKVIAIIAEGV 601
Cdd:smart00881   72 -FVPAEAAPDAIDEAIEAG-IKGIVVITEGI 100
PRK12351 PRK12351
methylcitrate synthase; Provisional
912-1079 1.38e-03

methylcitrate synthase; Provisional


Pssm-ID: 183463 [Multi-domain]  Cd Length: 378  Bit Score: 42.22  E-value: 1.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   912 VCARAGKDLISSLTSGLLTI-GDRFGGAlDGAARQFSEAFDQGWSANQFVSEMRKKGKHIMGIGHRVKSINNPdkRVEIL 990
Cdd:PRK12351  201 VIAGTGSDMYSAITGAIGALrGPKHGGA-NEVAFEIQQRYDTPDEAEADIRRRVENKEVVIGFGHPVYTISDP--RNKVI 277
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   991 KRFAMDKKEFAQETPLFEYALEVEKITTAKKpNLILNVD--GAIAILFVDIlrHSGMFTKqeaeetieigslngLFVLGR 1068
Cdd:PRK12351  278 KEVAKKLSKEAGDTKLYDIAERLETVMWEEK-KMFPNLDwfSAVSYHMMGV--PTAMFTP--------------LFVISR 340
                         170
                  ....*....|.
gi 17551266  1069 SIGFIGHYLDQ 1079
Cdd:PRK12351  341 TTGWAAHVIEQ 351
PRK14034 PRK14034
citrate synthase; Provisional
894-1079 2.89e-03

citrate synthase; Provisional


Pssm-ID: 184467 [Multi-domain]  Cd Length: 372  Bit Score: 41.29  E-value: 2.89e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   894 LMLTADHGPAVSgAHNTIVCARAGKDLISSLTSGLLTI-GDRFGGALDGAARQFSEaFDQGWSANQFVSEMRKKGKHIMG 972
Cdd:PRK14034  177 LVLHADHELNAS-TFTARVCVATLSDVYSGITAAIGALkGPLHGGANENVMKMLTE-IGEEENVESYIHNKLQNKEKIMG 254
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17551266   973 IGHRVksINNPDKRVEILKRFAMDKKEFAQETPLFEYALEVEKITTAKKpNLILNVDGAIAILFVDILRHSGMFTKqeae 1052
Cdd:PRK14034  255 FGHRV--YRQGDPRAKHLREMSKRLTVLLGEEKWYNMSIKIEEIVTKEK-GLPPNVDFYSASVYHCLGIDHDLFTP---- 327
                         170       180
                  ....*....|....*....|....*..
gi 17551266  1053 etieigslngLFVLGRSIGFIGHYLDQ 1079
Cdd:PRK14034  328 ----------IFAISRMSGWLAHILEQ 344
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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