NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|17566538|ref|NP_507916|]
View 

C2H2-type domain-containing protein [Caenorhabditis elegans]

Protein Classification

CCHC-type zinc finger protein( domain architecture ID 1000253)

CCHC-type zinc finger protein similar to human cellular nucleic acid-binding protein, a single-stranded DNA-binding protein that preferentially binds to the sterol regulatory element (SRE) sequence 5'-GTGCGGTG-3', and thereby mediates transcriptional repression

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PTZ00368 super family cl31762
universal minicircle sequence binding protein (UMSBP); Provisional
 96-202 4.93e-04

universal minicircle sequence binding protein (UMSBP); Provisional


The actual alignment was detected with superfamily member PTZ00368:

Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 41.33  E-value: 4.93e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17566538   96 RCPELGKckdlevyflknaRAQNVPRKDPSLPSGR--CNLCGShyfgfdmNDHKVRGCPFNKLSPAQRlrfqainnlaYC 173
Cdd:PTZ00368   5 RCGGVGH------------QSRECPNSAPAGAAKArpCYKCGE-------PGHLSRECPSAPGGRGER----------SC 55

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 17566538  174 QHCHSrsPDHtKSRHC-------SPRKCENCGDFGH 202
Cdd:PTZ00368  56 YNCGK--TGH-LSRECpeappgsGPRSCYNCGQTGH 88
 
Name Accession Description Interval E-value
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 96-202 4.93e-04

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 41.33  E-value: 4.93e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17566538   96 RCPELGKckdlevyflknaRAQNVPRKDPSLPSGR--CNLCGShyfgfdmNDHKVRGCPFNKLSPAQRlrfqainnlaYC 173
Cdd:PTZ00368   5 RCGGVGH------------QSRECPNSAPAGAAKArpCYKCGE-------PGHLSRECPSAPGGRGER----------SC 55

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 17566538  174 QHCHSrsPDHtKSRHC-------SPRKCENCGDFGH 202
Cdd:PTZ00368  56 YNCGK--TGH-LSRECpeappgsGPRSCYNCGQTGH 88
 
Name Accession Description Interval E-value
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 96-202 4.93e-04

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 41.33  E-value: 4.93e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17566538   96 RCPELGKckdlevyflknaRAQNVPRKDPSLPSGR--CNLCGShyfgfdmNDHKVRGCPFNKLSPAQRlrfqainnlaYC 173
Cdd:PTZ00368   5 RCGGVGH------------QSRECPNSAPAGAAKArpCYKCGE-------PGHLSRECPSAPGGRGER----------SC 55

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 17566538  174 QHCHSrsPDHtKSRHC-------SPRKCENCGDFGH 202
Cdd:PTZ00368  56 YNCGK--TGH-LSRECpeappgsGPRSCYNCGQTGH 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH