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Conserved domains on  [gi|392923083|ref|NP_507846|]
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SCP domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 177-312 2.23e-07

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.02  E-value: 2.23e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  177 PTRKPSLKTSaatsRATDAPVTSLPPPTDPPSTLGPMETP-----PNSPGTSSA-----ATTSAPVTSPAPTEPASTLGP 246
Cdd:PHA03247 2679 PPQRPRRRAA----RPTVGSLTSLADPPPPPPTPEPAPHAlvsatPLPPGPAAArqaspALPAAPAPPAVPAGPATPGGP 2754

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 392923083  247 VVIPwnSPGTSSKATTSATVTSLVLGPTtfSSAPQALDSSLAADPSTDPSPSISSTDPTTYSSTTA 312
Cdd:PHA03247 2755 ARPA--RPPTTAGPPAPAPPAAPAAGPP--RRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAA 2816
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 177-312 2.23e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.02  E-value: 2.23e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  177 PTRKPSLKTSaatsRATDAPVTSLPPPTDPPSTLGPMETP-----PNSPGTSSA-----ATTSAPVTSPAPTEPASTLGP 246
Cdd:PHA03247 2679 PPQRPRRRAA----RPTVGSLTSLADPPPPPPTPEPAPHAlvsatPLPPGPAAArqaspALPAAPAPPAVPAGPATPGGP 2754

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 392923083  247 VVIPwnSPGTSSKATTSATVTSLVLGPTtfSSAPQALDSSLAADPSTDPSPSISSTDPTTYSSTTA 312
Cdd:PHA03247 2755 ARPA--RPPTTAGPPAPAPPAAPAAGPP--RRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAA 2816
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
185-312 2.54e-05

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 45.90  E-value: 2.54e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 185 TSAATSRATDAPVTSLPPPTDPPSTLGPmeTPPNSPGTSSAATTSAPVTSPAPTEPASTLGPVVIPWNSPGTSSKATTSA 264
Cdd:COG3469   78 TTATATAAAAAATSTSATLVATSTASGA--NTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSG 155

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 392923083 265 TVTSLVLGPTTFSSAPQaldSSLAADPSTDPSPSISSTDPTTYSSTTA 312
Cdd:COG3469  156 TETATGGTTTTSTTTTT---TSASTTPSATTTATATTASGATTPSATT 200
SAP130_C pfam16014
Histone deacetylase complex subunit SAP130 C-terminus;
187-305 3.61e-05

Histone deacetylase complex subunit SAP130 C-terminus;


Pssm-ID: 464973 [Multi-domain]  Cd Length: 371  Bit Score: 45.31  E-value: 3.61e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  187 AATSRATDAPVTSLPPPTDPPS----TLGPMETPPNSPGTSSAATTSA-PVTSPAPtepaSTLGPVVIPWNSPGTSSkat 261
Cdd:pfam16014  40 ALPGQNSEQQTASASPPSQHPAqaipTILAPAAPPSQPSVVLSTLPAAmAVTPPIP----ASMANVVAPPTQPAASS--- 112

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 392923083  262 TSATVTSLVLGPTTFSSAPQALDSSLA--ADPSTDPSPSISSTDPT 305
Cdd:pfam16014 113 TAACAVSSVLPEIKIKQEAEPMDTSQSvpPLTPTSISPALTSLANN 158
KLF9_13_N-like cd21975
Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins; Kruppel/Krueppel-like ...
 177-264 4.71e-03

Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins; Kruppel/Krueppel-like transcription factors (KLFs) belong to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. KLF9, KLF10, KLF11, KLF13, KLF14, and KLF16 share a conserved alpha-helical motif AA/VXXL that mediates their binding to Sin3A and their activities as transcriptional repressors. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the related N-terminal domains of KLF9, KLF13, KLF14, KLF16, and similar proteins.


Pssm-ID: 409240 [Multi-domain]  Cd Length: 163  Bit Score: 37.36  E-value: 4.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 177 PTRKPSLKTSAATSRatDAPVTSLPPPTDPPSTlgpmeTPPNSPGTSSAAtTSAPVTSPAPTEPASTLGPV-VIPWNSPG 255
Cdd:cd21975   78 PLRGPSVEGSSLESG--DADMGSDSDVAPASGA-----AASTSPESSSDA-ASSPSPLSLLHPGEAGLEPErPRPRVRRG 149


                 ....*....
gi 392923083 256 TSSKATTSA 264
Cdd:cd21975  150 VRRRGVTPA 158
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 177-312 2.23e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.02  E-value: 2.23e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  177 PTRKPSLKTSaatsRATDAPVTSLPPPTDPPSTLGPMETP-----PNSPGTSSA-----ATTSAPVTSPAPTEPASTLGP 246
Cdd:PHA03247 2679 PPQRPRRRAA----RPTVGSLTSLADPPPPPPTPEPAPHAlvsatPLPPGPAAArqaspALPAAPAPPAVPAGPATPGGP 2754

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 392923083  247 VVIPwnSPGTSSKATTSATVTSLVLGPTtfSSAPQALDSSLAADPSTDPSPSISSTDPTTYSSTTA 312
Cdd:PHA03247 2755 ARPA--RPPTTAGPPAPAPPAAPAAGPP--RRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAA 2816
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 185-270 5.25e-07

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 51.24  E-value: 5.25e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 185 TSAATSRATDAPVTSLPPPTDPPStlGPMETPPNSPGTSSAATTSAPVTS--PAPTEPASTLGPVVI---PWNSPGTSSK 259
Cdd:PLN02217 578 ASSNTTFSSDSPSTVVAPSTSPPA--GHLGSPPATPSKIVSPSTSPPASHlgSPSTTPSSPESSIKVastETASPESSIK 655

                         90
                 ....*....|.
gi 392923083 260 ATTSATVTSLV 270
Cdd:PLN02217 656 VASTESSVSMV 666
PHA03247 PHA03247
large tegument protein UL36; Provisional
 176-326 3.96e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.78  E-value: 3.96e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  176 QPTRKPSLKTSAATSRATDAPVTSLPPPTDPPSTLGPMETPPNSPGTSSAATTSAPVTSPAPTEPASTLGPVV------- 248
Cdd:PHA03247 2896 ESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVpgrvavp 2975

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  249 ---IPWNSPGTSSKATTSATVTSLVLgpttfsSAPQALDSSLAADPSTDPSPsiSSTDPTTYSSTTAEDYDEEDDKKGDE 325
Cdd:PHA03247 2976 rfrVPQPAPSREAPASSTPPLTGHSL------SRVSSWASSLALHEETDPPP--VSLKQTLWPPDDTEDSDADSLFDSDS 3047


                  .
gi 392923083  326 E 326
Cdd:PHA03247 3048 E 3048
PHA03247 PHA03247
large tegument protein UL36; Provisional
 177-305 7.05e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 7.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  177 PTRKPSLKTSAATSRATDAPVT----SLPPPTDPPSTLGPMETP-PNSPGTSSAATTSAPVTSPAPTEPASTLGPVVIP- 250
Cdd:PHA03247 2771 PPAAPAAGPPRRLTRPAVASLSesreSLPSPWDPADPPAAVLAPaAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSl 2850

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 392923083  251 ----WNSPG--------TSSKATTSAT-----VTSLVLGPTTFSSAPQALDSSLAADPSTDPSPSISSTDPT 305
Cdd:PHA03247 2851 plggSVAPGgdvrrrppSRSPAAKPAAparppVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQ 2922
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 196-326 1.14e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 47.17  E-value: 1.14e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 196 PVTSLPPPTDPPSTLGPMETPPNSPGTSSAATTSAPVTSPAPTEPASTLGPVVIPWNSPGTSSKATTSATVTSLVLGPTT 275
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 392923083 276 ----FSSAPQALDSSLAADPSTDPSPSISSTDPttyssTTAEDYDEEDDKKGDEE 326
Cdd:PRK07994 441 sepaAASRARPVNSALERLASVRPAPSALEKAP-----AKKEAYRWKATNPVEVK 490
PHA03247 PHA03247
large tegument protein UL36; Provisional
 177-312 1.70e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 1.70e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  177 PTRKPSLKTSAATSRATDAPVTSLPPPTDPPSTLGPMeTPPNSPGTSSAATTSAPVTSPAPTEPASTLGPVVipwnSPGT 256
Cdd:PHA03247 2704 PPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPA-PPAVPAGPATPGGPARPARPPTTAGPPAPAPPAA----PAAG 2778

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 392923083  257 SSKATTSATVTSLVLGPTTFSSAPQALDSSLAADPSTDPSPSISSTDPTTYSSTTA 312
Cdd:PHA03247 2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA 2834
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
180-305 2.48e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 46.38  E-value: 2.48e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 180 KPSLKTSAATSRATdAPVTSLPPPTDPPSTLGPMETPPNSPGTSSAATTSAPVTSPAPTEPASTLGPVVIPWNS---PGT 256
Cdd:PRK07003 411 APKAAAAAAATRAE-APPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDappDAA 489

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 392923083 257 SSKATTSATVTSLVLGPTTFSSAPQALDSSLAADPSTDPSPSISSTDPT 305
Cdd:PRK07003 490 FEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPA 538
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
185-312 2.54e-05

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 45.90  E-value: 2.54e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 185 TSAATSRATDAPVTSLPPPTDPPSTLGPmeTPPNSPGTSSAATTSAPVTSPAPTEPASTLGPVVIPWNSPGTSSKATTSA 264
Cdd:COG3469   78 TTATATAAAAAATSTSATLVATSTASGA--NTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSG 155

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 392923083 265 TVTSLVLGPTTFSSAPQaldSSLAADPSTDPSPSISSTDPTTYSSTTA 312
Cdd:COG3469  156 TETATGGTTTTSTTTTT---TSASTTPSATTTATATTASGATTPSATT 200
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
177-306 2.70e-05

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 45.90  E-value: 2.70e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 177 PTRKPSLKTSAATSRATDAPVTSLPPPTDPPSTLGPMETPPNSPGTSSAATTSapvtspapTEPASTLGPVVIPWNSPGT 256
Cdd:COG3469   88 AATSTSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASA--------TSSAGSTTTTTTVSGTETA 159

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 392923083 257 SSKATTSATVTSLVLGPTTFSSAPQALDSSLAADPSTDPSPSISSTDPTT 306
Cdd:COG3469  160 TGGTTTTSTTTTTTSASTTPSATTTATATTASGATTPSATTTATTTGPPT 209
PHA03247 PHA03247
large tegument protein UL36; Provisional
 185-311 2.91e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.08  E-value: 2.91e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  185 TSAATSRATDAPVTSLPPPTDPPSTLGPMETPPNSPGTSSAATTSAPVTSPAPTEPASTLGPVVIPWNSPGTSSKATTS- 263
Cdd:PHA03247 2725 PAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDp 2804

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 392923083  264 ATVTSLVLGPTTFSSAPQALDSSLAADPSTDPSPSISSTDPTTYSSTT 311
Cdd:PHA03247 2805 ADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPL 2852
SAP130_C pfam16014
Histone deacetylase complex subunit SAP130 C-terminus;
187-305 3.61e-05

Histone deacetylase complex subunit SAP130 C-terminus;


Pssm-ID: 464973 [Multi-domain]  Cd Length: 371  Bit Score: 45.31  E-value: 3.61e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  187 AATSRATDAPVTSLPPPTDPPS----TLGPMETPPNSPGTSSAATTSA-PVTSPAPtepaSTLGPVVIPWNSPGTSSkat 261
Cdd:pfam16014  40 ALPGQNSEQQTASASPPSQHPAqaipTILAPAAPPSQPSVVLSTLPAAmAVTPPIP----ASMANVVAPPTQPAASS--- 112

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 392923083  262 TSATVTSLVLGPTTFSSAPQALDSSLA--ADPSTDPSPSISSTDPT 305
Cdd:pfam16014 113 TAACAVSSVLPEIKIKQEAEPMDTSQSvpPLTPTSISPALTSLANN 158
PRK10856 PRK10856
cytoskeleton protein RodZ;
189-290 6.36e-05

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 44.25  E-value: 6.36e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 189 TSRATDAPVTSLPPPTDPPSTLGPMETPPNSPGTSSAATTSAPVTSPAPTEPASTLGPVVIPWNSPGTSSKATTSATvts 268
Cdd:PRK10856 166 TSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQA--- 242

                         90       100
                 ....*....|....*....|..
gi 392923083 269 lvlGPTTFSSAPQALDSSLAAD 290
Cdd:PRK10856 243 ---GVSTPAADPNALVMNFTAD 261
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
185-312 6.73e-05

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 44.74  E-value: 6.73e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 185 TSAATSRATDAPVTSLPPPTDPPSTLGPMETPPNSPGTSSAATTSAPVTSPAPTEPASTLGPVVIPWNSPGTSSKATTSA 264
Cdd:COG3469   49 VVVAASGSAGSGTGTTAASSTAATSSTTSTTATATAAAAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSS 128

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 392923083 265 TVTSLVLGPTTFSSAPQALD--------------SSLAADPSTDPSPSISSTDPTTYSSTTA 312
Cdd:COG3469  129 TAGSTTTSGASATSSAGSTTttttvsgtetatggTTTTSTTTTTTSASTTPSATTTATATTA 190
PHA03247 PHA03247
large tegument protein UL36; Provisional
 177-306 8.34e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.93  E-value: 8.34e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  177 PTRKPSLKTSAATSRATD--APVTSLPPPTDPPSTLGPMETPPNSPGTSSAATTSAPVTSPAPTEPASTlgpvvipwnSP 254
Cdd:PHA03247 2754 PARPARPPTTAGPPAPAPpaAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA---------SP 2824

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 392923083  255 GTSSKATTSATVTSLVLgPTTFSSAPQALDSSLA--ADPSTDPSPSISSTDPTT 306
Cdd:PHA03247 2825 AGPLPPPTSAQPTAPPP-PPGPPPPSLPLGGSVApgGDVRRRPPSRSPAAKPAA 2877
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 186-302 1.07e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 43.90  E-value: 1.07e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 186 SAATSRATDAPVTSLPPPTDPPSTLGPMETPPNSPGTSSAAT--TSAPVTSPAPTEPASTLGPVviPWNSPGTSSKATTS 263
Cdd:PRK14959 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAApaTPAPSAAPSPRVPWDDAPPA--PPRSGIPPRPAPRM 456

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 392923083 264 ATVTSLVLGPTTFSSAPQALDSSLAADPSTDPSPSISST 302
Cdd:PRK14959 457 PEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPRT 495
motB PRK12799
flagellar motor protein MotB; Reviewed
 185-303 1.47e-04

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 43.55  E-value: 1.47e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 185 TSAATSRATDAPVTSLPPPTDPPSTLGPmETPPNSPGTSSAATTSAPVT--------SPAPTEPASTLGPVVIPWNS--- 253
Cdd:PRK12799 299 VPVAAVTPSSAVTQSSAITPSSAAIPSP-AVIPSSVTTQSATTTQASAValssagvlPSDVTLPGTVALPAAEPVNMqpq 377

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 392923083 254 PGTSSKATTSAT--VTSLVLGPTTfssapqaldsSLAADPSTDPSPSISSTD 303
Cdd:PRK12799 378 PMSTTETQQSSTgnITSTANGPTT----------SLPAAPASNIPVSPTSRD 419
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 177-326 1.63e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 43.62  E-value: 1.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  177 PTRKPSLKTSAATSRATDAPVTSLPPPTDPPSTLGPMETPPNSPGTSSAATTSAPVTSPAPTEPASTLGPVVIPWNSPGT 256
Cdd:PHA03307  102 REGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEE 181

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 392923083  257 SSKATTSATVTSLVL-GPTTFSSAPQALDSSLAAD-PSTDPSPSISSTDPTTYSSTTAEDYDEEDDKKGDEE 326
Cdd:PHA03307  182 TARAPSSPPAEPPPStPPAAASPRPPRRSSPISASaSSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPEN 253
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
177-318 1.99e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.33  E-value: 1.99e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 177 PTRKPSLKTSAATSRATDAPVTSLPPPTDP-PSTLGPMETPPNSPGTSSAATTSAPVTSPAPTEPASTLGPVVIPWNSPG 255
Cdd:PRK12323 399 PAAPPAAPAAAPAAAAAARAVAAAPARRSPaPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAA 478

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 392923083 256 TSSKATTSATVTSLVLGPTTFSSAPQALDSSLAADPstDPSPSISSTDPTTYSSTTAEDYDEE 318
Cdd:PRK12323 479 APARAAPAAAPAPADDDPPPWEELPPEFASPAPAQP--DAAPAGWVAESIPDPATADPDDAFE 539
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
176-304 3.90e-04

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 41.96  E-value: 3.90e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  176 QPTRKPSLKTSAATSRATDAPVTSLPPP--TDPPSTLGPMETPPNSPGTSS---------AATTSAPVTSPAPTEPASTL 244
Cdd:pfam05539 205 QTATANQRLSSTEPVGTQGTTTSSNPEPqtEPPPSQRGPSGSPQHPPSTTSqdqsttgdgQEHTQRRKTPPATSNRRSPH 284

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  245 GPVVIPWNSPGTSSKATTSATVTSLVLGPTTFSSAPQALDsslaADPSTDPSPSISSTDP 304
Cdd:pfam05539 285 STATPPPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQ----ANPTTQNLVDCKELDP 340
Nucleoporin_FG2 pfam15967
Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of ...
 199-311 4.64e-04

Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of chordate nucleoporins. The proteins carry many repeats of the FG sequence motif.


Pssm-ID: 435043 [Multi-domain]  Cd Length: 586  Bit Score: 41.96  E-value: 4.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  199 SLPPPTDPPSTLGPMETPPNSPGTSSAATT------SAPVTSPAP-TEPASTLGPVVIPWNSPGTSSKATTSATVTSLVL 271
Cdd:pfam15967  72 TFGTPASSTAATGPTGLTLGTPAATTAASTgfslgfNKPAASATPfSLPASSTSGGGLSLGSVLTSTAAQQGATGFTLNL 151

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 392923083  272 GPTTFSSAPQALDSSLAADPSTDPSPSISSTDPTTYSSTT 311
Cdd:pfam15967 152 GGTPATTTAVSTGLSLGSTLTSLGGSLFQNTNSTGLGQTT 191
PRK10856 PRK10856
cytoskeleton protein RodZ;
198-292 4.81e-04

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 41.55  E-value: 4.81e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 198 TSLPPPTDPPSTLGPMETPPNSPGTSSAATTSAPVTSPAPTEPASTLGPVVIPwnSPGTSSKATTSATVTSLVLGPTTFS 277
Cdd:PRK10856 160 QSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAP--SQANVDTAATPAPAAPATPDGAAPL 237

                         90
                 ....*....|....*
gi 392923083 278 SAPQALDSSLAADPS 292
Cdd:PRK10856 238 PTDQAGVSTPAADPN 252
PHA03247 PHA03247
large tegument protein UL36; Provisional
 181-298 4.85e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 4.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  181 PSLKTSAATSRATDAPVTSLPPPTdPPSTLGPME-TPPNSP-GTSSAATTSAPVTSPAPTEPASTLGPVVIPWNSPGTSS 258
Cdd:PHA03247 2736 PAAPAPPAVPAGPATPGGPARPAR-PPTTAGPPApAPPAAPaAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAP 2814

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 392923083  259 KATTSATVTSLVLGPTTFSSAPqaldssLAADPSTDPSPS 298
Cdd:PHA03247 2815 AAALPPAASPAGPLPPPTSAQP------TAPPPPPGPPPP 2848
PHA03247 PHA03247
large tegument protein UL36; Provisional
 177-300 6.51e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.85  E-value: 6.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  177 PTRKPSLKTSAATSRATDAPVTSLPPPTDPPSTLGPMETPPNSPGTSSAATTS--APVTSPAPTEPASTLGPVVIPWNSP 254
Cdd:PHA03247  375 PKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAppPPATPLPSAEPGSDDGPAPPPERQP 454

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 392923083  255 GTSSKATTSatvtslvlgPTTFSSAPQALDSSLAADPSTDPSPSIS 300
Cdd:PHA03247  455 PAPATEPAP---------DDPDDATRKALDALRERRPPEPPGADLA 491
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 177-306 7.20e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.70  E-value: 7.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  177 PTRKPSLKTSAATSRATDAPVTSLPPPTDPPSTLGPMETPPNSPG-TSSAATTSAPVTSPAPTEPAStlgpvvipwnSPG 255
Cdd:PHA03307  310 SSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSrPPPPADPSSPRKRPRPSRAPS----------SPA 379

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 392923083  256 TSSKATTSATVTSLVLGPTTFSSAPQALDSSLAADPSTDPSPSISSTDPTT 306
Cdd:PHA03307  380 ASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARY 430
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 186-313 7.33e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.70  E-value: 7.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  186 SAATSRATDAPVTSLPPPTDPPStlGPMeTPPNSPGTSSAATTSAPVTSPAPTEPASTLGPvvipwnsPGTSSKATTSAT 265
Cdd:PHA03307   51 AAVTVVAGAAACDRFEPPTGPPP--GPG-TEAPANESRSTPTWSLSTLAPASPAREGSPTP-------PGPSSPDPPPPT 120

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 392923083  266 VTSLVLGPTTFSSAPQALDSSLAADPSTDPSPSISSTDPTTYSSTTAE 313
Cdd:PHA03307  121 PPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAAS 168
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
185-318 7.97e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.40  E-value: 7.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 185 TSAATSRATDAPVTSLPPPTDPPSTLGPMETPPNSPGTSSAATTSAPVTSPaPTEPASTLGPVVIPWNS-PGTSSKATTS 263
Cdd:PRK12323 447 APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPP-PWEELPPEFASPAPAQPdAAPAGWVAES 525

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 392923083 264 ATVTSLVLGPTTFSSAPQALDSSLAADPSTDPSPSISSTDPTTYSSTTAEDYDEE 318
Cdd:PRK12323 526 IPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGD 580
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 180-316 1.03e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.85  E-value: 1.03e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 180 KPSlktSAATSRATDAPVTSLPPPTDPPSTLGPMETPPNS-PGTSSAATTSAPVTSPAPTEPASTLGPVVIPWNSPGTSS 258
Cdd:PRK14951 365 KPA---AAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPaPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAA 441

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 392923083 259 KATTSATVTSlvlgPTTFSSAPQALDSSLAADPSTDPSPSISSTDPTTYSSTTAEDYD 316
Cdd:PRK14951 442 PAAVALAPAP----PAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGD 495
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 185-309 1.19e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 40.71  E-value: 1.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  185 TSAATSRATDAPVTSLPPPTD--PPSTLGPMETPPNSP---GTSSAATTSAPVTSPAPtEPASTLGPVVIPWNSPgtSSK 259
Cdd:pfam17823 264 ASAAGTINMGDPHARRLSPAKhmPSDTMARNPAAPMGAqaqGPIIQVSTDQPVHNTAG-EPTPSPSNTTLEPNTP--KSV 340

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 392923083  260 ATTSATVTslvlgpTTFSSAPQALDSSLAADPSTDPSPSISSTDPTTYSS 309
Cdd:pfam17823 341 ASTNLAVV------TTTKAQAKEPSASPVPVLHTSMIPEVEATSPTTQPS 384
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 175-243 1.21e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 40.56  E-value: 1.21e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 392923083 175 VQPTRKPSLKTSAATSRATDA--PVTSLPPPtdPPSTLGPMETPPnsPGTSSAATTSAPVTSPAPTEPAST 243
Cdd:PRK14950 379 VRPTPAPSTRPKAAAAANIPPkePVRETATP--PPVPPRPVAPPV--PHTPESAPKLTRAAIPVDEKPKYT 445
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 181-342 1.24e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.92  E-value: 1.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  181 PSLKTSAATSRATDAPVTSLPPPTDPPstlgPMETPPNSPGTSSAATTSAP---VTSPAPTEPASTLGPVVIPWNSPGTS 257
Cdd:PHA03307   91 SLSTLAPASPAREGSPTPPGPSSPDPP----PPTPPPASPPPSPAPDLSEMlrpVGSPGPPPAASPPAAGASPAAVASDA 166

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  258 SKATTSATVTSLVLGPTTFSSAPQA---LDSSLAADPSTDPSPSISSTDPTtySSTTAEDYDEEDDKKGDEEYDLILTFG 334
Cdd:PHA03307  167 ASSRQAALPLSSPEETARAPSSPPAeppPSTPPAAASPRPPRRSSPISASA--SSPAPAPGRSAADDAGASSSDSSSSES 244


                  ....*...
gi 392923083  335 RGTGRNGT 342
Cdd:PHA03307  245 SGCGWGPE 252
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 184-321 1.38e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.92  E-value: 1.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  184 KTSAATSRATDAPVTSLPPPTDPP--------STLGPMETPPNSPGTSSAATTSAPVTSPAPTEPAST-------LGPVV 248
Cdd:PHA03307   59 AAACDRFEPPTGPPPGPGTEAPANesrstptwSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPppspapdLSEML 138

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 392923083  249 IPWNSPGTSSKATTSATVTSLVLGPTTFSSAPQALDSSLAADPSTDPSPSISSTDPTTYSSTTAEDYDEEDDK 321
Cdd:PHA03307  139 RPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSS 211
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 185-303 1.49e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.35  E-value: 1.49e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 185 TSAATSRATDAPVTSLPPPTDPPstlgPMETPPNSPGTSSAATTSAPVTSPAPTEPASTLGPVVIPWNSPGTSSKATTSA 264
Cdd:PRK07764 395 AAAAPSAAAAAPAAAPAPAAAAP----AAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAP 470

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 392923083 265 TVTSlvlgPTTFSSAPQALD---SSLAADPSTDPSPSISSTD 303
Cdd:PRK07764 471 AAAP----EPTAAPAPAPPAapaPAAAPAAPAAPAAPAGADD 508
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
187-305 1.71e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.22  E-value: 1.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 187 AATSRATDAPVTSLPPPTDPPSTLGPMETPPNSPGTSSAATTSAPVTSPAPtepastlgpvvipwnsPGTSSKATTSATV 266
Cdd:PRK07003 382 APGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAP----------------PATADRGDDAADG 445

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 392923083 267 TSLVLGPTTFSSAPQALDSSLAADPSTDPSPSISSTDPT 305
Cdd:PRK07003 446 DAPVPAKANARASADSRCDERDAQPPADSGSASAPASDA 484
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 195-313 3.18e-03

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 39.37  E-value: 3.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  195 APVTSLPPPTDPPSTLGPMETPPNSPGTSSAATTSAPVTSPAPTEPASTLGPVVIPWNSPGTSSKATTS--ATVTSLVLG 272
Cdd:pfam03154 176 AQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAPHTLIQQTPTLHPQRLPSphPPLQPMTQP 255

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 392923083  273 PTTFSSAPQALDS------------SLAADPSTDPSPSISSTDPTTYSSTTAE 313
Cdd:pfam03154 256 PPPSQVSPQPLPQpslhgqmppmphSLQTGPSHMQHPVPPQPFPLTPQSSQSQ 308
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 208-305 3.24e-03

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 39.30  E-value: 3.24e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 208 STLGPMETPPNSPGTS-SAATTSAPVTSPaptePASTLGPvviPWNSPGTSSKATTSATVTSLVLGPTTFSSAPQALDSS 286
Cdd:PLN02217 571 STPTGSAASSNTTFSSdSPSTVVAPSTSP----PAGHLGS---PPATPSKIVSPSTSPPASHLGSPSTTPSSPESSIKVA 643

                         90
                 ....*....|....*....
gi 392923083 287 LAADPSTDPSPSISSTDPT 305
Cdd:PLN02217 644 STETASPESSIKVASTESS 662
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 181-310 3.78e-03

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 39.37  E-value: 3.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  181 PSLKtsAATSRATDAPVTSLPPPTDPPSTLGPMETPPNSPGTSSAATTSAPVTSPAPTEPASTLGPVVIPWnsPGTSSKA 260
Cdd:pfam03154 394 PALK--PLSSLSTHHPPSAHPPPLQLMPQSQQLPPPPAQPPVLTQSQSLPPPAASHPPTSGLHQVPSQSPF--PQHPFVP 469

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 392923083  261 TTSATVTSLVLGPTTFSSAPQALdsslaaDPSTDPSPSISSTDPTTYSST 310
Cdd:pfam03154 470 GGPPPITPPSGPPTSTSSAMPGI------QPPSSASVSSSGPVPAAVSCP 513
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 178-301 4.20e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 38.78  E-value: 4.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 178 TRKPSLKTSAATSRATDAPVTSLPPPTDPPSTLGPMETPPNSPGTSSAATTSAPVTSPAPTEPASTlgpvvIPWNSPGTS 257
Cdd:PTZ00436 232 AAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAA-----APAKAAAAP 306

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 392923083 258 SKATTSATVTSlvlGPTTFSSAPQALDSSLAADPSTDPSPSISS 301
Cdd:PTZ00436 307 AKAAAAPAKAA---APPAKAAAPPAKAATPPAKAAAPPAKAAAA 347
PLN00034 PLN00034
mitogen-activated protein kinase kinase; Provisional
 177-244 4.29e-03

mitogen-activated protein kinase kinase; Provisional


Pssm-ID: 215036 [Multi-domain]  Cd Length: 353  Bit Score: 38.65  E-value: 4.29e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 177 PTRKPSLKTSAAT--SRATDAPVTSLPPPTDPPSTLGPMETPPNSPGTSSAATTSAPVTSPAPTEPASTL 244
Cdd:PLN00034   7 PPGVPLPSTARHTtkSRPRRRPDLTLPLPQRDPSLAVPLPLPPPSSSSSSSSSSSASGSAPSAAKSLSEL 76
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 177-314 4.35e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 38.94  E-value: 4.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 177 PTRKPSLKTSAATSRATDAPVTSLPPPTDPPSTLGPMETPPNSPGTSSAATTSA---PVTSPAPTEPASTLGPvviPWNS 253
Cdd:PHA03269  25 NIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAAsekFDPAPAPHQAASRAPD---PAVA 101

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 392923083 254 PGTSSKATTSATVtslvlgptTFSSAPQALDSSLAADPST-----DPSPSISSTDPTTYSSTTAED 314
Cdd:PHA03269 102 PQLAAAPKPDAAE--------AFTSAAQAHEAPADAGTSAaskkpDPAAHTQHSPPPFAYTRSMEH 159
KLF9_13_N-like cd21975
Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins; Kruppel/Krueppel-like ...
 177-264 4.71e-03

Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins; Kruppel/Krueppel-like transcription factors (KLFs) belong to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. KLF9, KLF10, KLF11, KLF13, KLF14, and KLF16 share a conserved alpha-helical motif AA/VXXL that mediates their binding to Sin3A and their activities as transcriptional repressors. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the related N-terminal domains of KLF9, KLF13, KLF14, KLF16, and similar proteins.


Pssm-ID: 409240 [Multi-domain]  Cd Length: 163  Bit Score: 37.36  E-value: 4.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 177 PTRKPSLKTSAATSRatDAPVTSLPPPTDPPSTlgpmeTPPNSPGTSSAAtTSAPVTSPAPTEPASTLGPV-VIPWNSPG 255
Cdd:cd21975   78 PLRGPSVEGSSLESG--DADMGSDSDVAPASGA-----AASTSPESSSDA-ASSPSPLSLLHPGEAGLEPErPRPRVRRG 149


                 ....*....
gi 392923083 256 TSSKATTSA 264
Cdd:cd21975  150 VRRRGVTPA 158
Hamartin pfam04388
Hamartin protein; This family includes the hamartin protein which is thought to function as a ...
 177-314 5.03e-03

Hamartin protein; This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein pfam03542. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterized by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation either TSC1 or TSC2 tumour suppressor gene. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin pfam03542. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking.


Pssm-ID: 461287 [Multi-domain]  Cd Length: 730  Bit Score: 38.89  E-value: 5.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  177 PTRKPSLKTSAATSRATDAPVT-----------SLPPPTDPPSTLGP--------------METPPNSPGTSsaATTSAP 231
Cdd:pfam04388 276 PTASPYTDQQSSYGSSTSTPSStprlqlssssgTSPPYLSPPSIRLKtdsfplwspssvcgMTTPPTSPGMV--PTTPSE 353

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  232 VTSPAPTEPASTLGPvvipwnsPGTSSKATTSAT-VTSL----VLGPTTFSSAPQAL-DSSLAADP------STDPSPSI 299
Cdd:pfam04388 354 LSPSSSHLSSRGSSP-------PEAAGEATPETTpAKDSpylkQPPPLSDSHVHRALpASSQPSSPprkdgrSQSSFPPL 426

                         170
                  ....*....|....*
gi 392923083  300 SSTDPTTYSSTTAED 314
Cdd:pfam04388 427 SKQAPTNPNSRGLLE 441
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 174-250 5.52e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 38.64  E-value: 5.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 174 LVQPTRKPSLKTSAATSRAtdaPVTSLPPPTDPPSTLGPMETPPNSPGTSSA---ATTSAPVTSPAPT--EPASTLGPVV 248
Cdd:PRK14950 359 LLVPVPAPQPAKPTAAAPS---PVRPTPAPSTRPKAAAAANIPPKEPVRETAtppPVPPRPVAPPVPHtpESAPKLTRAA 435


                 ..
gi 392923083 249 IP 250
Cdd:PRK14950 436 IP 437
motB PRK12799
flagellar motor protein MotB; Reviewed
 205-310 6.01e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 38.54  E-value: 6.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 205 DPPSTLGPMETPPNSPGTSSAATTSAPVTSPAPTEPASTLGPVVIPwNSPGTSSKATTSATVTSLVLGPTTFSSAPQALD 284
Cdd:PRK12799 285 EKATGLKQIDTHGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIP-SSVTTQSATTTQASAVALSSAGVLPSDVTLPGT 363

                         90       100
                 ....*....|....*....|....*.
gi 392923083 285 SSLAADPSTDPSPSISSTDPTTYSST 310
Cdd:PRK12799 364 VALPAAEPVNMQPQPMSTTETQQSST 389
PHA03247 PHA03247
large tegument protein UL36; Provisional
 179-310 6.17e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 38.77  E-value: 6.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  179 RKPSLKTSAATSRATDAPVTSLPPPTDPPSTlGPMETPPNSPGTSSAATTSAPVTSPAPTEPASTLGPvviPWNSPGTSS 258
Cdd:PHA03247 2865 RPPSRSPAAKPAAPARPPVRRLARPAVSRST-ESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQP---PPPPPPRPQ 2940

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 392923083  259 KATTSATVTSLVLGPTTFSSAPQ--ALDSSLAADPST---DPSPSISSTDPTTYSST 310
Cdd:PHA03247 2941 PPLAPTTDPAGAGEPSGAVPQPWlgALVPGRVAVPRFrvpQPAPSREAPASSTPPLT 2997
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 185-311 6.54e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 38.40  E-value: 6.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  185 TSAATSRATDAPVTSLPPPTDppstlgpMETPPNSPGTSSAATTSAPVT-------SPAPTEPASTLGPVVIPWNSPgTS 257
Cdd:pfam17823  76 TSAAHLNSTEVTAEHTPHGTD-------LSEPATREGAADGAASRALAAaassspsSAAQSLPAAIAALPSEAFSAP-RA 147

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 392923083  258 SKATTSATVTSLVlgPTTFSSAPQALDSS---LAADPSTDPSPSISSTDPTTYSSTT 311
Cdd:pfam17823 148 AACRANASAAPRA--AIAAASAPHAASPAprtAASSTTAASSTTAASSAPTTAASSA 202
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
185-250 6.60e-03

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 38.20  E-value: 6.60e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 392923083 185 TSAATSRATDAPVTslPPPTDPPSTLGPMETPPNSPGTSSAATTSAPVTSPAPTEPASTLGPVVIP 250
Cdd:COG3469  148 TTTTTVSGTETATG--GTTTTSTTTTTTSASTTPSATTTATATTASGATTPSATTTATTTGPPTPG 211
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 178-316 7.25e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 38.36  E-value: 7.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  178 TRKPSLKTSAATSRATD--APVTSLPPPTDPPSTLGPMETPPNSPGTSSAATTSAPVTSPAPTEPASTLGPVVIPWNSPG 255
Cdd:pfam05109 489 TPSPSPRDNGTESKAPDmtSPTSAVTTPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPN 568

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 392923083  256 TSSKATTSATVTSLVLGPTTFSSAPQALDSSLAADPS------TDPSPSISSTDPTTYSSTTAEDYD 316
Cdd:pfam05109 569 ATIPTLGKTSPTSAVTTPTPNATSPTVGETSPQANTTnhtlggTSSTPVVTSPPKNATSAVTTGQHN 635
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 177-313 7.58e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 38.01  E-value: 7.58e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 177 PTRKPSLKtSAATSRATDAPVTSLPPPTDPPSTLGPMETPPNSPGTSSAATTSAPVTSPAP-----TEPASTLGPvviPW 251
Cdd:PTZ00436 211 PSGKKSAK-AAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPpakaaAPPAKAAAP---PA 286

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 392923083 252 NSPGTSSKATTSATVTSlvLGPTTFSSAPQaldSSLAADPSTDPSPSISSTDPTTYSSTTAE 313
Cdd:PTZ00436 287 KAAAPPAKAAAAPAKAA--AAPAKAAAAPA---KAAAPPAKAAAPPAKAATPPAKAAAPPAK 343
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 186-313 7.64e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 38.36  E-value: 7.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  186 SAATSRATDAPVTSLPPPTDPPS-TLGPMETPPNSPGTSSAATTSAP---VTSPAPTEPASTLGPVvipwnspgTSSKAT 261
Cdd:pfam05109 477 TPAGTTSGASPVTPSPSPRDNGTeSKAPDMTSPTSAVTTPTPNATSPtpaVTTPTPNATSPTLGKT--------SPTSAV 548

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 392923083  262 TSATVTSLVLGPTTFSSAPQALDSSLAadpSTDPSPSISSTDPTTYSSTTAE 313
Cdd:pfam05109 549 TTPTPNATSPTPAVTTPTPNATIPTLG---KTSPTSAVTTPTPNATSPTVGE 597
PHA03378 PHA03378
EBNA-3B; Provisional
 185-282 8.76e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 38.12  E-value: 8.76e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 185 TSAATSRATDAPVTSLPPPTDPPSTLGPMETPPNSPGTSSAATTSAPVTSPAPTE---PASTLGPVVIPWNSPGTSSK-- 259
Cdd:PHA03378 679 TGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRarpPAAAPGRARPPAAAPGRARPpa 758

                         90       100
                 ....*....|....*....|....
gi 392923083 260 -ATTSATVTSLVLGPTTFSSAPQA 282
Cdd:PHA03378 759 aAPGRARPPAAAPGAPTPQPPPQA 782
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 178-310 8.78e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 37.97  E-value: 8.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  178 TRKPSLKTS--AATSRATDAPV-TSLPPPTDPPSTLGPME-----TPPNSPGTSSAATTSAPVTSPAPTEPASTLGPVVI 249
Cdd:pfam05109 429 TTSPTLNTTgfAAPNTTTGLPSsTHVPTNLTAPASTGPTVstadvTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTS 508

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 392923083  250 PWNSPGTSSKATTSAtvTSLVLGPTTFSSAPqALDSSLAADPSTDPSPSISSTDPTTYSST 310
Cdd:pfam05109 509 PTSAVTTPTPNATSP--TPAVTTPTPNATSP-TLGKTSPTSAVTTPTPNATSPTPAVTTPT 566
PPE COG5651
PPE-repeat protein [Function unknown];
187-312 8.98e-03

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 37.57  E-value: 8.98e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083 187 AATSRAtdapVTSLPPPTDPPSTL------------GPMETPPNSPGTSSAATTSAPVTSPAPTEPASTLGPVVIPWNSP 254
Cdd:COG5651  155 AAASAA----AVALTPFTQPPPTItnpggllgaqnaGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSGPIGLNSGPGNTG 230

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 392923083 255 GTSSKATTSATVTSLVLGPTTFSSAPQALDSSLAADPSTDPSPSISSTDPTTYSSTTA 312
Cdd:COG5651  231 FAGTGAAAGAAAAAAAAAAAAGAGASAALASLAATLLNASSLGLAATAASSAATNLGL 288
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 185-311 9.78e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 37.63  E-value: 9.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392923083  185 TSAATSRATDAPVTSLPPPTDP---PSTLGPMETPPNSPGTSSAATTSAPVTSPAPTEPASTLGPVVIPWNSPGTSSKAT 261
Cdd:pfam17823 120 SSSPSSAAQSLPAAIAALPSEAfsaPRAAACRANASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAA 199

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 392923083  262 TSATVTSLVLGPTTFSSAPQ---ALDSSLAADPSTDPSPSISSTDPTTYSSTT 311
Cdd:pfam17823 200 SSAPATLTPARGISTAATATghpAAGTALAAVGNSSPAAGTVTAAVGTVTPAA 252
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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