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Conserved domains on  [gi|17560670|ref|NP_507010|]
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Uncharacterized protein CELE_F36G9.15 [Caenorhabditis elegans]

Protein Classification

DUF1179 superfamily-containing protein( domain architecture ID 13665)

DUF1179 superfamily-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1179 super family cl05953
Protein of unknown function (DUF1179); This family consists of several hypothetical ...
 4-94 5.01e-40

Protein of unknown function (DUF1179); This family consists of several hypothetical Caenorhabditis elegans proteins of around 106 residues in length. The function of the family is unknown.


The actual alignment was detected with superfamily member pfam06678:

Pssm-ID: 369033  Cd Length: 107  Bit Score: 128.47  E-value: 5.01e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17560670     4 FSIYFQSITLLFGPFLLLIVFIVNCQSKKKFKEDGRAKLVPRN-APVCPDPAKEKSAQTCPTAQTPPAKTPMERSGSAVE 82
Cdd:pfam06678   3 FTTILKSIVLFFGPFLLLLVPIVNCSSKKKFETDGRADLVPKNvAPVRPGPVKESSKQAPPTAQTPPARTPVEKTGDVAE 82

                          90
                  ....*....|..
gi 17560670    83 DTLANVKSLPPE 94
Cdd:pfam06678  83 DTLANVKSLPPE 94
 
Name Accession Description Interval E-value
DUF1179 pfam06678
Protein of unknown function (DUF1179); This family consists of several hypothetical ...
 4-94 5.01e-40

Protein of unknown function (DUF1179); This family consists of several hypothetical Caenorhabditis elegans proteins of around 106 residues in length. The function of the family is unknown.


Pssm-ID: 369033  Cd Length: 107  Bit Score: 128.47  E-value: 5.01e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17560670     4 FSIYFQSITLLFGPFLLLIVFIVNCQSKKKFKEDGRAKLVPRN-APVCPDPAKEKSAQTCPTAQTPPAKTPMERSGSAVE 82
Cdd:pfam06678   3 FTTILKSIVLFFGPFLLLLVPIVNCSSKKKFETDGRADLVPKNvAPVRPGPVKESSKQAPPTAQTPPARTPVEKTGDVAE 82

                          90
                  ....*....|..
gi 17560670    83 DTLANVKSLPPE 94
Cdd:pfam06678  83 DTLANVKSLPPE 94
 
Name Accession Description Interval E-value
DUF1179 pfam06678
Protein of unknown function (DUF1179); This family consists of several hypothetical ...
 4-94 5.01e-40

Protein of unknown function (DUF1179); This family consists of several hypothetical Caenorhabditis elegans proteins of around 106 residues in length. The function of the family is unknown.


Pssm-ID: 369033  Cd Length: 107  Bit Score: 128.47  E-value: 5.01e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17560670     4 FSIYFQSITLLFGPFLLLIVFIVNCQSKKKFKEDGRAKLVPRN-APVCPDPAKEKSAQTCPTAQTPPAKTPMERSGSAVE 82
Cdd:pfam06678   3 FTTILKSIVLFFGPFLLLLVPIVNCSSKKKFETDGRADLVPKNvAPVRPGPVKESSKQAPPTAQTPPARTPVEKTGDVAE 82

                          90
                  ....*....|..
gi 17560670    83 DTLANVKSLPPE 94
Cdd:pfam06678  83 DTLANVKSLPPE 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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