NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|71984394|ref|NP_504077|]
View 

Receptor L-domain domain-containing protein [Caenorhabditis elegans]

Protein Classification

Recep_L_domain domain-containing protein( domain architecture ID 10287037)

Recep_L_domain domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Recep_L_domain pfam01030
Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. ...
 225-330 5.36e-18

Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. Each L domain consists of a single-stranded right hand beta-helix. This Pfam entry is missing the first 50 amino acid residues of the domain.


:

Pssm-ID: 460032  Cd Length: 112  Bit Score: 78.43  E-value: 5.36e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71984394   225 CQKVFGDVEV------GPNTNLDSIKMIEIIFGSLIINGTNVTDFNFLENLKYVASFT--ADKSGIIVENNPNLQNISFP 296
Cdd:pfam01030   2 CTVIYGNLEItlidenNDSELLSFLSNVEEITGYLLIANTNLVSLSFLPNLRIIRGRNlfDDNYALYILDNPNLTELGLP 81

                          90       100       110
                  ....*....|....*....|....*....|....
gi 71984394   297 KLKRVRAsnpATIVFDKNNKYLSLDVDSCNGLKN 330
Cdd:pfam01030  82 SLKEITS---GGVYIHNNPKLCYTETEILWKLLL 112
Recep_L_domain super family cl08303
Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. ...
 55-159 7.41e-03

Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. Each L domain consists of a single-stranded right hand beta-helix. This Pfam entry is missing the first 50 amino acid residues of the domain.


The actual alignment was detected with superfamily member pfam01030:

Pssm-ID: 460032  Cd Length: 112  Bit Score: 35.67  E-value: 7.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71984394    55 CSTVCSDLQIGEDCDLTEAQLTSAFLNMKRLIGNIFVVSTKFRSGSFLAGLESIECNN-FDVMWVLNnqmleigltnlts 133
Cdd:pfam01030   2 CTVIYGNLEITLIDENNDSELLSFLSNVEEITGYLLIANTNLVSLSFLPNLRIIRGRNlFDDNYALY------------- 68

                          90       100
                  ....*....|....*....|....*.
gi 71984394   134 iscvgfqVTENKKLVRLNMPNLKNIT 159
Cdd:pfam01030  69 -------ILDNPNLTELGLPSLKEIT 87
 
Name Accession Description Interval E-value
Recep_L_domain pfam01030
Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. ...
 225-330 5.36e-18

Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. Each L domain consists of a single-stranded right hand beta-helix. This Pfam entry is missing the first 50 amino acid residues of the domain.


Pssm-ID: 460032  Cd Length: 112  Bit Score: 78.43  E-value: 5.36e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71984394   225 CQKVFGDVEV------GPNTNLDSIKMIEIIFGSLIINGTNVTDFNFLENLKYVASFT--ADKSGIIVENNPNLQNISFP 296
Cdd:pfam01030   2 CTVIYGNLEItlidenNDSELLSFLSNVEEITGYLLIANTNLVSLSFLPNLRIIRGRNlfDDNYALYILDNPNLTELGLP 81

                          90       100       110
                  ....*....|....*....|....*....|....
gi 71984394   297 KLKRVRAsnpATIVFDKNNKYLSLDVDSCNGLKN 330
Cdd:pfam01030  82 SLKEITS---GGVYIHNNPKLCYTETEILWKLLL 112
Recep_L_domain pfam01030
Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. ...
 55-159 7.41e-03

Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. Each L domain consists of a single-stranded right hand beta-helix. This Pfam entry is missing the first 50 amino acid residues of the domain.


Pssm-ID: 460032  Cd Length: 112  Bit Score: 35.67  E-value: 7.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71984394    55 CSTVCSDLQIGEDCDLTEAQLTSAFLNMKRLIGNIFVVSTKFRSGSFLAGLESIECNN-FDVMWVLNnqmleigltnlts 133
Cdd:pfam01030   2 CTVIYGNLEITLIDENNDSELLSFLSNVEEITGYLLIANTNLVSLSFLPNLRIIRGRNlFDDNYALY------------- 68

                          90       100
                  ....*....|....*....|....*.
gi 71984394   134 iscvgfqVTENKKLVRLNMPNLKNIT 159
Cdd:pfam01030  69 -------ILDNPNLTELGLPSLKEIT 87
 
Name Accession Description Interval E-value
Recep_L_domain pfam01030
Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. ...
 225-330 5.36e-18

Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. Each L domain consists of a single-stranded right hand beta-helix. This Pfam entry is missing the first 50 amino acid residues of the domain.


Pssm-ID: 460032  Cd Length: 112  Bit Score: 78.43  E-value: 5.36e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71984394   225 CQKVFGDVEV------GPNTNLDSIKMIEIIFGSLIINGTNVTDFNFLENLKYVASFT--ADKSGIIVENNPNLQNISFP 296
Cdd:pfam01030   2 CTVIYGNLEItlidenNDSELLSFLSNVEEITGYLLIANTNLVSLSFLPNLRIIRGRNlfDDNYALYILDNPNLTELGLP 81

                          90       100       110
                  ....*....|....*....|....*....|....
gi 71984394   297 KLKRVRAsnpATIVFDKNNKYLSLDVDSCNGLKN 330
Cdd:pfam01030  82 SLKEITS---GGVYIHNNPKLCYTETEILWKLLL 112
Recep_L_domain pfam01030
Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. ...
 55-159 7.41e-03

Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. Each L domain consists of a single-stranded right hand beta-helix. This Pfam entry is missing the first 50 amino acid residues of the domain.


Pssm-ID: 460032  Cd Length: 112  Bit Score: 35.67  E-value: 7.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71984394    55 CSTVCSDLQIGEDCDLTEAQLTSAFLNMKRLIGNIFVVSTKFRSGSFLAGLESIECNN-FDVMWVLNnqmleigltnlts 133
Cdd:pfam01030   2 CTVIYGNLEITLIDENNDSELLSFLSNVEEITGYLLIANTNLVSLSFLPNLRIIRGRNlFDDNYALY------------- 68

                          90       100
                  ....*....|....*....|....*.
gi 71984394   134 iscvgfqVTENKKLVRLNMPNLKNIT 159
Cdd:pfam01030  69 -------ILDNPNLTELGLPSLKEIT 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH