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Conserved domains on  [gi|17543792|ref|NP_502805|]
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C3H1-type domain-containing protein [Caenorhabditis elegans]

Protein Classification

zinc finger CCCH domain-containing protein( domain architecture ID 10457906)

zinc finger CCCH domain-containing protein similar to Homo sapiens proline-rich protein 3 (PRR3)

CATH:  4.10.1000.10
Gene Ontology:  GO:0046872|GO:0003676
PubMed:  12665246|27990022
SCOP:  3001741

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
69-95 8.98e-08

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 46.42  E-value: 8.98e-08
                          10        20
                  ....*....|....*....|....*..
gi 17543792    69 FKTALCKTFQLTKACSYGEQCKFAHSV 95
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
112-136 1.04e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 46.42  E-value: 1.04e-07
                          10        20
                  ....*....|....*....|....*
gi 17543792   112 YKTVLCDNFSTTGHCKYGTKCQFIH 136
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAH 25
 
Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
69-95 8.98e-08

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 46.42  E-value: 8.98e-08
                          10        20
                  ....*....|....*....|....*..
gi 17543792    69 FKTALCKTFQLTKACSYGEQCKFAHSV 95
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
112-136 1.04e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 46.42  E-value: 1.04e-07
                          10        20
                  ....*....|....*....|....*
gi 17543792   112 YKTVLCDNFSTTGHCKYGTKCQFIH 136
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAH 25
ZnF_C3H1 smart00356
zinc finger;
111-136 1.16e-05

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 40.69  E-value: 1.16e-05
                           10        20
                   ....*....|....*....|....*.
gi 17543792    111 KYKTVLCDNFsTTGHCKYGTKCQFIH 136
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAH 25
ZnF_C3H1 smart00356
zinc finger;
69-94 1.85e-04

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 37.22  E-value: 1.85e-04
                           10        20
                   ....*....|....*....|....*.
gi 17543792     69 FKTALCKTFQlTKACSYGEQCKFAHS 94
Cdd:smart00356   2 YKTELCKFFK-RGYCPRGDRCKFAHP 26
CTH1 COG5063
CCCH-type Zn-finger protein [General function prediction only];
73-136 2.82e-04

CCCH-type Zn-finger protein [General function prediction only];


Pssm-ID: 227395 [Multi-domain]  Cd Length: 351  Bit Score: 40.81  E-value: 2.82e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17543792  73 LCKTFQLTKACSY---GEQCKFAHSVEELQLKHQNlGINNPkYKTVLCDNFSTTGHCKYGTKCQFIH 136
Cdd:COG5063 232 LCESFTRKGTCPYwisGVKCQFACRGHGLNELKSK-KKKQN-FRTEPCINWEKSGYCPYGLRCCFKH 296
 
Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
69-95 8.98e-08

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 46.42  E-value: 8.98e-08
                          10        20
                  ....*....|....*....|....*..
gi 17543792    69 FKTALCKTFQLTKACSYGEQCKFAHSV 95
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
112-136 1.04e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 46.42  E-value: 1.04e-07
                          10        20
                  ....*....|....*....|....*
gi 17543792   112 YKTVLCDNFSTTGHCKYGTKCQFIH 136
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAH 25
ZnF_C3H1 smart00356
zinc finger;
111-136 1.16e-05

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 40.69  E-value: 1.16e-05
                           10        20
                   ....*....|....*....|....*.
gi 17543792    111 KYKTVLCDNFsTTGHCKYGTKCQFIH 136
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAH 25
ZnF_C3H1 smart00356
zinc finger;
69-94 1.85e-04

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 37.22  E-value: 1.85e-04
                           10        20
                   ....*....|....*....|....*.
gi 17543792     69 FKTALCKTFQlTKACSYGEQCKFAHS 94
Cdd:smart00356   2 YKTELCKFFK-RGYCPRGDRCKFAHP 26
CTH1 COG5063
CCCH-type Zn-finger protein [General function prediction only];
73-136 2.82e-04

CCCH-type Zn-finger protein [General function prediction only];


Pssm-ID: 227395 [Multi-domain]  Cd Length: 351  Bit Score: 40.81  E-value: 2.82e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17543792  73 LCKTFQLTKACSY---GEQCKFAHSVEELQLKHQNlGINNPkYKTVLCDNFSTTGHCKYGTKCQFIH 136
Cdd:COG5063 232 LCESFTRKGTCPYwisGVKCQFACRGHGLNELKSK-KKKQN-FRTEPCINWEKSGYCPYGLRCCFKH 296
CTH1 COG5063
CCCH-type Zn-finger protein [General function prediction only];
67-136 7.24e-04

CCCH-type Zn-finger protein [General function prediction only];


Pssm-ID: 227395 [Multi-domain]  Cd Length: 351  Bit Score: 39.65  E-value: 7.24e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17543792  67 NAFKTALCKTFQLTKACSYGEQCKFAHSVEELQLKHQNlgiNNPKYKTVLCDNFSTTGHCKYGTKCQFIH 136
Cdd:COG5063 270 QNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEE---ASLGYLDGPCRTRAKGGAFPSGGAVCKSF 336
COG5152 COG5152
Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function ...
 69-113 2.94e-03

Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only];


Pssm-ID: 227481 [Multi-domain]  Cd Length: 259  Bit Score: 37.36  E-value: 2.94e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 17543792  69 FKTALCKTFQLTKACSYGEQCKFAHSVEELQLKHQNLGINNPKYK 113
Cdd:COG5152 139 TQPDVCKDYKETGYCGYGDSCKFLHDRSDFKTGWKLNQEWNAEYE 183
CTH1 COG5063
CCCH-type Zn-finger protein [General function prediction only];
69-136 3.88e-03

CCCH-type Zn-finger protein [General function prediction only];


Pssm-ID: 227395 [Multi-domain]  Cd Length: 351  Bit Score: 37.34  E-value: 3.88e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17543792  69 FKTALCKTFQLTKACSYGEQCKFAHSVEELQLKHQnlginNPKYKTVLCDNFSTTGHCKYGTKCQFIH 136
Cdd:COG5063 113 YKTEMLRSSTEIPYCRYPDKNPFAHSKAISSLAQT-----HPKYKTESLEVFINPGYVPYSKRCCFIS 175
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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