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Conserved domains on  [gi|17540300|ref|NP_502245|]
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Amidinotransferase [Caenorhabditis elegans]

Protein Classification

dimethylarginine dimethylaminohydrolase family protein( domain architecture ID 10004634)

dimethylarginine dimethylaminohydrolase (DdaH) family protein similar to Pseudomonas aeruginosa N(G),N(G)-dimethylarginine dimethylaminohydrolase that hydrolyzes N(G),N(G)-dimethyl-L-arginine (ADMA) and N(G)-monomethyl-L-arginine (MMA)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DdaH COG1834
N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism];
15-283 1.39e-83

N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism];


:

Pssm-ID: 441439 [Multi-domain]  Cd Length: 264  Bit Score: 251.63  E-value: 1.39e-83
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540300  15 RIMMCRPTHFKVDYSINpWMDEKI-----QADFEKATKQWDTLKSTIEKCGAEVVVMESEDarDYPDIVFCANAGILRGN 89
Cdd:COG1834   1 RVLMCRPDHFGVEYAIN-WMDPLRewagpPPDAERAVAQWDALVDALEALGVEVHRLPPVP--GLPDMVFTRDAGLVIGD 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540300  90 KIYLSHFAFPERYGEHVFYKRFFDKLGYQtsfNHKIIHEG---AGDALWCGNgmNILVsGVGPRSDVQACQDIKRKLKLN 166
Cdd:COG1834  78 GAILARMRHPERRGEEAAYREWLEELGIP---VVRLPEPGvfeGGDVLLDGD--TLLV-GYGFRTNRAGIEWLARLLGYE 151
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540300 167 sddtfyVVAARLVDPRFYHVDTCFCPLDEDLAMAYMPAFDSVSQNNIRNY-TDLLPVPEKDARRFVCNSVVI-GKNVIVH 244
Cdd:COG1834 152 ------VVPLELVDPRFLHLDTAFCPLAPGLALVYPEAFDPESLALLKEPgWDLIEVPEEEAAWLGCNVLSLgGRRVVSP 225
                       250       260       270
                ....*....|....*....|....*....|....*....
gi 17540300 245 HGSDTTFKLLEQHGFQVHPIDMSEFMKAGGSAKCCTLRL 283
Cdd:COG1834 226 AGNPRLNAALRAAGFEVIEVDLSEFLKGGGGFHCLTLPL 264
 
Name Accession Description Interval E-value
DdaH COG1834
N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism];
15-283 1.39e-83

N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism];


Pssm-ID: 441439 [Multi-domain]  Cd Length: 264  Bit Score: 251.63  E-value: 1.39e-83
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540300  15 RIMMCRPTHFKVDYSINpWMDEKI-----QADFEKATKQWDTLKSTIEKCGAEVVVMESEDarDYPDIVFCANAGILRGN 89
Cdd:COG1834   1 RVLMCRPDHFGVEYAIN-WMDPLRewagpPPDAERAVAQWDALVDALEALGVEVHRLPPVP--GLPDMVFTRDAGLVIGD 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540300  90 KIYLSHFAFPERYGEHVFYKRFFDKLGYQtsfNHKIIHEG---AGDALWCGNgmNILVsGVGPRSDVQACQDIKRKLKLN 166
Cdd:COG1834  78 GAILARMRHPERRGEEAAYREWLEELGIP---VVRLPEPGvfeGGDVLLDGD--TLLV-GYGFRTNRAGIEWLARLLGYE 151
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540300 167 sddtfyVVAARLVDPRFYHVDTCFCPLDEDLAMAYMPAFDSVSQNNIRNY-TDLLPVPEKDARRFVCNSVVI-GKNVIVH 244
Cdd:COG1834 152 ------VVPLELVDPRFLHLDTAFCPLAPGLALVYPEAFDPESLALLKEPgWDLIEVPEEEAAWLGCNVLSLgGRRVVSP 225
                       250       260       270
                ....*....|....*....|....*....|....*....
gi 17540300 245 HGSDTTFKLLEQHGFQVHPIDMSEFMKAGGSAKCCTLRL 283
Cdd:COG1834 226 AGNPRLNAALRAAGFEVIEVDLSEFLKGGGGFHCLTLPL 264
amidinotransferase-like cd21113
L-arginine:glycine amidinotransferase, inosamine-phosphate amidinotransferase and similar ...
41-283 4.36e-14

L-arginine:glycine amidinotransferase, inosamine-phosphate amidinotransferase and similar proteins; This family contains amidinotransferase enzymes known to catalyze the transfer of the amidino group from a donor molecule (usually arginine) to an acceptor molecule bearing a primary amine. They are widespread in nature, occurring in essential metabolic pathways in eukaryotes as well as in biosynthetic pathways for antibiotics and virulence factors in prokaryotes. This family includes L-arginine:glycine amidinotransferase (EC 2.1.4.1; also called glycine amidinotransferase, arginine-glycine amidinotransferase, or arginine-glycine transamidinase), inosamine-phosphate amidinotransferase (EC 2.1.4.2; also called inosamine amidinotransferase, inosamine-P amidinotransferase, or scyllo-inosamine-4-phosphate amidinotransferase or L-arginine:inosamine phosphate amidinotransferase), and similar proteins. L-arginine:glycine amidinotransferase (AT or AGAT) catalyzes the committed step in creatine biosynthesis by formation of guanidinoacetic acid, the immediate precursor of creatine. Inosamine-phosphate amidinotransferases catalyze two nonconsecutive transamidination reactions in the biosynthesis of the streptomycin family of antibiotics. This family also includes L-arginine:inosamine-phosphate Streptomyces griseus amidinotransferase StrB1, which is structurally similar to human L-arginine:glycine amidinotransferase; AT and StrB1 share conserved residues involved in substrate binding and catalysis at equivalent topological positions, suggesting a similar reaction mechanism among amidinotransferases.


Pssm-ID: 439146  Cd Length: 336  Bit Score: 71.38  E-value: 4.36e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540300  41 DFEKATKQWDTLKSTIEKCG------AEVVVMESEDARDYPDIVFCANAGILRGNKIYLSHFAFPERYGEHVFYKRFFDK 114
Cdd:cd21113  54 DLKKAVAELENLASILEKEGvrvrrpKEVDHLPAKTPDGETTGVMPRDILFVIGNKIIEAPMAWPSRFFEELAYRDILED 133
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540300 115 LG--------------------YQTSFNHKIIHEGAGDALWCGNGMNILVSGVGPRSDVQACQDIKRkLKLNSDDTFYVV 174
Cdd:cd21113 134 YGesglyrvmrapkpeggddlyDGQAPAGEDIITETEPLFDAADFMRFGKDIIGQRSQVTNMKGIEW-LREYLGDDYTVH 212
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540300 175 AARLVDPRFYHVDTCFCPLDEDLAMAYMPAF-DSVSQNNIRNYTDLLPVPE----KDARRFVC------NSVVIGKN-VI 242
Cdd:cd21113 213 IIELDDPHPMHLDCTFLPLREGLALIYPSRVvEPRQIPDFFKGWELINVPEypepDDHPLYMCsnwlgtNVLSLDEKtII 292
                       250       260       270       280
                ....*....|....*....|....*....|....*....|.
gi 17540300 243 VHHGSDTTFKLLEQHGFQVHPIDMSEFMKAGGSAKCCTLRL 283
Cdd:cd21113 293 VERREVHLNRQLRKLGMNVIEIPFYHAISLGGGFHCATMDL 333
DDAH_eukar pfam19420
N,N dimethylarginine dimethylhydrolase, eukaryotic; This family contains N(G),N(G) ...
35-280 1.41e-11

N,N dimethylarginine dimethylhydrolase, eukaryotic; This family contains N(G),N(G)-dimethylarginine dimethylaminohydrolases (DDAH) from eukaryotes. It also includes arginine deiminases and DDAH from prokaryotes. These enzymes are involved in arginine metabolism and belong to the amidinotransferase (AT) superfamily as they share the alpha/beta propeller fold, which includes structurally important residues (buried hydrophobic residues, buried hydrophilic residues hydrogen-bonded with mainchain groups and the hallmark of three consecutive buried Gly residues near the C-terminus, conserved among its members.


Pssm-ID: 437252 [Multi-domain]  Cd Length: 288  Bit Score: 63.55  E-value: 1.41e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540300    35 DEKIQADFEKATKQWDTLKSTIEKCGAEVVVMESEDaRDYPDIVFCANAGIL-RGNKIYLSHFAFPERYGEHVFYK---- 109
Cdd:pfam19420  18 GLSEDEIQERALKEFDAMVQALRQNGIEVIVLDDTE-PKTPDAVFPNNWFSThADGTVFLYPMYAENRRLERREDLlell 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540300   110 -----RFFDKLGYQTSFNHKIIHEGAGDaLWCGNGMNILVSGVGPRSDVQACQDIKRKLKLNSDDTFYVVAARLVDPRFY 184
Cdd:pfam19420  97 lekgfAVYKVLDYSGFEDESKFLEGTGD-MVFDHENKIAYGALSPRADEEVLEEVCREIGYKPVTFHSEVIVDRKGKPIY 175
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540300   185 HVDTCFCpLDEDLAMAYMPAFDSVSQNNI------RNYTDLLPVPEKDARRFVCNSVVIGKNVIVHHGSDTTF------- 251
Cdd:pfam19420 176 HTNVMMN-VGEDLAVVCLESIPDRKERELvlraltQSGKEIIDISEEQIFHFAGNVLELCNGNKNLIMSVTAYdsltpvq 254
                         250       260       270
                  ....*....|....*....|....*....|
gi 17540300   252 KLLEQHGFQVHPIDMSEF-MKAGGSAKCCT 280
Cdd:pfam19420 255 EQLIEKYCEVISVDIPTIeRLGGGSARCMI 284
 
Name Accession Description Interval E-value
DdaH COG1834
N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism];
15-283 1.39e-83

N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism];


Pssm-ID: 441439 [Multi-domain]  Cd Length: 264  Bit Score: 251.63  E-value: 1.39e-83
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540300  15 RIMMCRPTHFKVDYSINpWMDEKI-----QADFEKATKQWDTLKSTIEKCGAEVVVMESEDarDYPDIVFCANAGILRGN 89
Cdd:COG1834   1 RVLMCRPDHFGVEYAIN-WMDPLRewagpPPDAERAVAQWDALVDALEALGVEVHRLPPVP--GLPDMVFTRDAGLVIGD 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540300  90 KIYLSHFAFPERYGEHVFYKRFFDKLGYQtsfNHKIIHEG---AGDALWCGNgmNILVsGVGPRSDVQACQDIKRKLKLN 166
Cdd:COG1834  78 GAILARMRHPERRGEEAAYREWLEELGIP---VVRLPEPGvfeGGDVLLDGD--TLLV-GYGFRTNRAGIEWLARLLGYE 151
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540300 167 sddtfyVVAARLVDPRFYHVDTCFCPLDEDLAMAYMPAFDSVSQNNIRNY-TDLLPVPEKDARRFVCNSVVI-GKNVIVH 244
Cdd:COG1834 152 ------VVPLELVDPRFLHLDTAFCPLAPGLALVYPEAFDPESLALLKEPgWDLIEVPEEEAAWLGCNVLSLgGRRVVSP 225
                       250       260       270
                ....*....|....*....|....*....|....*....
gi 17540300 245 HGSDTTFKLLEQHGFQVHPIDMSEFMKAGGSAKCCTLRL 283
Cdd:COG1834 226 AGNPRLNAALRAAGFEVIEVDLSEFLKGGGGFHCLTLPL 264
amidinotransferase-like cd21113
L-arginine:glycine amidinotransferase, inosamine-phosphate amidinotransferase and similar ...
41-283 4.36e-14

L-arginine:glycine amidinotransferase, inosamine-phosphate amidinotransferase and similar proteins; This family contains amidinotransferase enzymes known to catalyze the transfer of the amidino group from a donor molecule (usually arginine) to an acceptor molecule bearing a primary amine. They are widespread in nature, occurring in essential metabolic pathways in eukaryotes as well as in biosynthetic pathways for antibiotics and virulence factors in prokaryotes. This family includes L-arginine:glycine amidinotransferase (EC 2.1.4.1; also called glycine amidinotransferase, arginine-glycine amidinotransferase, or arginine-glycine transamidinase), inosamine-phosphate amidinotransferase (EC 2.1.4.2; also called inosamine amidinotransferase, inosamine-P amidinotransferase, or scyllo-inosamine-4-phosphate amidinotransferase or L-arginine:inosamine phosphate amidinotransferase), and similar proteins. L-arginine:glycine amidinotransferase (AT or AGAT) catalyzes the committed step in creatine biosynthesis by formation of guanidinoacetic acid, the immediate precursor of creatine. Inosamine-phosphate amidinotransferases catalyze two nonconsecutive transamidination reactions in the biosynthesis of the streptomycin family of antibiotics. This family also includes L-arginine:inosamine-phosphate Streptomyces griseus amidinotransferase StrB1, which is structurally similar to human L-arginine:glycine amidinotransferase; AT and StrB1 share conserved residues involved in substrate binding and catalysis at equivalent topological positions, suggesting a similar reaction mechanism among amidinotransferases.


Pssm-ID: 439146  Cd Length: 336  Bit Score: 71.38  E-value: 4.36e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540300  41 DFEKATKQWDTLKSTIEKCG------AEVVVMESEDARDYPDIVFCANAGILRGNKIYLSHFAFPERYGEHVFYKRFFDK 114
Cdd:cd21113  54 DLKKAVAELENLASILEKEGvrvrrpKEVDHLPAKTPDGETTGVMPRDILFVIGNKIIEAPMAWPSRFFEELAYRDILED 133
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540300 115 LG--------------------YQTSFNHKIIHEGAGDALWCGNGMNILVSGVGPRSDVQACQDIKRkLKLNSDDTFYVV 174
Cdd:cd21113 134 YGesglyrvmrapkpeggddlyDGQAPAGEDIITETEPLFDAADFMRFGKDIIGQRSQVTNMKGIEW-LREYLGDDYTVH 212
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540300 175 AARLVDPRFYHVDTCFCPLDEDLAMAYMPAF-DSVSQNNIRNYTDLLPVPE----KDARRFVC------NSVVIGKN-VI 242
Cdd:cd21113 213 IIELDDPHPMHLDCTFLPLREGLALIYPSRVvEPRQIPDFFKGWELINVPEypepDDHPLYMCsnwlgtNVLSLDEKtII 292
                       250       260       270       280
                ....*....|....*....|....*....|....*....|.
gi 17540300 243 VHHGSDTTFKLLEQHGFQVHPIDMSEFMKAGGSAKCCTLRL 283
Cdd:cd21113 293 VERREVHLNRQLRKLGMNVIEIPFYHAISLGGGFHCATMDL 333
DDAH_eukar pfam19420
N,N dimethylarginine dimethylhydrolase, eukaryotic; This family contains N(G),N(G) ...
35-280 1.41e-11

N,N dimethylarginine dimethylhydrolase, eukaryotic; This family contains N(G),N(G)-dimethylarginine dimethylaminohydrolases (DDAH) from eukaryotes. It also includes arginine deiminases and DDAH from prokaryotes. These enzymes are involved in arginine metabolism and belong to the amidinotransferase (AT) superfamily as they share the alpha/beta propeller fold, which includes structurally important residues (buried hydrophobic residues, buried hydrophilic residues hydrogen-bonded with mainchain groups and the hallmark of three consecutive buried Gly residues near the C-terminus, conserved among its members.


Pssm-ID: 437252 [Multi-domain]  Cd Length: 288  Bit Score: 63.55  E-value: 1.41e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540300    35 DEKIQADFEKATKQWDTLKSTIEKCGAEVVVMESEDaRDYPDIVFCANAGIL-RGNKIYLSHFAFPERYGEHVFYK---- 109
Cdd:pfam19420  18 GLSEDEIQERALKEFDAMVQALRQNGIEVIVLDDTE-PKTPDAVFPNNWFSThADGTVFLYPMYAENRRLERREDLlell 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540300   110 -----RFFDKLGYQTSFNHKIIHEGAGDaLWCGNGMNILVSGVGPRSDVQACQDIKRKLKLNSDDTFYVVAARLVDPRFY 184
Cdd:pfam19420  97 lekgfAVYKVLDYSGFEDESKFLEGTGD-MVFDHENKIAYGALSPRADEEVLEEVCREIGYKPVTFHSEVIVDRKGKPIY 175
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540300   185 HVDTCFCpLDEDLAMAYMPAFDSVSQNNI------RNYTDLLPVPEKDARRFVCNSVVIGKNVIVHHGSDTTF------- 251
Cdd:pfam19420 176 HTNVMMN-VGEDLAVVCLESIPDRKERELvlraltQSGKEIIDISEEQIFHFAGNVLELCNGNKNLIMSVTAYdsltpvq 254
                         250       260       270
                  ....*....|....*....|....*....|
gi 17540300   252 KLLEQHGFQVHPIDMSEF-MKAGGSAKCCT 280
Cdd:pfam19420 255 EQLIEKYCEVISVDIPTIeRLGGGSARCMI 284
ADI pfam02274
Arginine deiminase; This family contains arginine deiminases, EC:3.5.3.6., enzymes that ...
88-280 2.46e-07

Arginine deiminase; This family contains arginine deiminases, EC:3.5.3.6., enzymes that catalyze the reaction: arginine + H2O <=> citrulline + NH3. These enzymes belong to the amidinotranferase (AT) superfamily, which share the alpha/beta fold including structurally important residues, i.e buried hydrophobic residues, buried hydrophilic residues hydrogen-bonded with mainchain groups and a structural hallmark of three consecutive buried Gly residues near the C-terminus, conserved among these proteins.


Pssm-ID: 426693  Cd Length: 377  Bit Score: 51.23  E-value: 2.46e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540300    88 GNKIYLSHFAFPERYGEHVFYK-------RFFDKLGY-QTSFNHKIIH----EGaGDALWCGNGmnILVSGVGPRSDVQA 155
Cdd:pfam02274 135 GGGITINRMAWPARRRESLLMEyiykfhpRFAGHKFYiWRGDDDKEIGnctiEG-GDILPLSNG--VVLIGVSERTSAQG 211
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540300   156 CQDIKRklKLNSDDTFYVVAARLVD--PRFYHVDTCFCPLDEDLaMAYMPAF-------------DSVSQNNIRNY--TD 218
Cdd:pfam02274 212 IEELAR--KLFADTRAKRVIAINIPkhRAFMHLDTVFTMVDRDK-FTIYPNImdaegvfwvlrpeDGDPADDVGIEhaAD 288
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540300   219 LLPVPEK-----------------DARR----FVCNSVVIGKNVIVHHGSDT-TFKLLEQHGFQVHPIDMSEFMKAGGSA 276
Cdd:pfam02274 289 LLEVLEKalglkglrlietgggdvAAEReqwdDGNNTLAIAPGVVVTYDRNTvTNELLREAGIKVIEIPGSELGRGRGGP 368

                  ....
gi 17540300   277 KCCT 280
Cdd:pfam02274 369 RCMS 372
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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