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Conserved domains on  [gi|17534717|ref|NP_494766|]
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Alcohol dehydrogenase transcription factor myb/sant-like protein [Caenorhabditis elegans]

Protein Classification

Myb/SANT-like transcription factor( domain architecture ID 10651957)

Myb/SANT-like transcription factor with an N-terminal MADF domain, which resembles the 3 alpha-helix bundle of the DNA-binding Myb domains

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
MADF smart00595
subfamily of SANT domain;
9-94 5.86e-24

subfamily of SANT domain;


:

Pssm-ID: 214738  Cd Length: 89  Bit Score: 93.19  E-value: 5.86e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17534717      9 RLIEAVRHSRCLFDNTDRQYRNTEYKNRVWQRLVTVLGFDGDprMLSARWKQLRDKYGKEKRK----QKYGNEKSSWQYF 84
Cdd:smart00595   1 RLIELVRERPCLWDRRHPDYRNKEEKRKAWEEIAEELGLSVE--ECKKRWKNLRDRYRRELKRlqngKSGGGKKSKWEYF 78
                           90
                   ....*....|
gi 17534717     85 KHLHFLDPHM 94
Cdd:smart00595  79 DRLSFLRPVI 88
MADF smart00595
subfamily of SANT domain;
122-212 8.46e-24

subfamily of SANT domain;


:

Pssm-ID: 214738  Cd Length: 89  Bit Score: 92.81  E-value: 8.46e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17534717    122 NLILEVRRHPCLYDVRDPKYRHGDCRTQAWGMIIDKLRYpgTVPSIYKQWKKHRDRYVREKRRLRNLGDPNvQDVSTWEM 201
Cdd:smart00595   1 RLIELVRERPCLWDRRHPDYRNKEEKRKAWEEIAEELGL--SVEECKKRWKNLRDRYRRELKRLQNGKSGG-GKKSKWEY 77
                           90
                   ....*....|.
gi 17534717    202 YDDMAWIDQHL 212
Cdd:smart00595  78 FDRLSFLRPVI 88
 
Name Accession Description Interval E-value
MADF smart00595
subfamily of SANT domain;
9-94 5.86e-24

subfamily of SANT domain;


Pssm-ID: 214738  Cd Length: 89  Bit Score: 93.19  E-value: 5.86e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17534717      9 RLIEAVRHSRCLFDNTDRQYRNTEYKNRVWQRLVTVLGFDGDprMLSARWKQLRDKYGKEKRK----QKYGNEKSSWQYF 84
Cdd:smart00595   1 RLIELVRERPCLWDRRHPDYRNKEEKRKAWEEIAEELGLSVE--ECKKRWKNLRDRYRRELKRlqngKSGGGKKSKWEYF 78
                           90
                   ....*....|
gi 17534717     85 KHLHFLDPHM 94
Cdd:smart00595  79 DRLSFLRPVI 88
MADF smart00595
subfamily of SANT domain;
122-212 8.46e-24

subfamily of SANT domain;


Pssm-ID: 214738  Cd Length: 89  Bit Score: 92.81  E-value: 8.46e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17534717    122 NLILEVRRHPCLYDVRDPKYRHGDCRTQAWGMIIDKLRYpgTVPSIYKQWKKHRDRYVREKRRLRNLGDPNvQDVSTWEM 201
Cdd:smart00595   1 RLIELVRERPCLWDRRHPDYRNKEEKRKAWEEIAEELGL--SVEECKKRWKNLRDRYRRELKRLQNGKSGG-GKKSKWEY 77
                           90
                   ....*....|.
gi 17534717    202 YDDMAWIDQHL 212
Cdd:smart00595  78 FDRLSFLRPVI 88
MADF_DNA_bdg pfam10545
Alcohol dehydrogenase transcription factor Myb/SANT-like; The myb/SANT-like domain in Adf-1 ...
123-208 9.94e-24

Alcohol dehydrogenase transcription factor Myb/SANT-like; The myb/SANT-like domain in Adf-1 (MADF) is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains.


Pssm-ID: 463144  Cd Length: 84  Bit Score: 92.35  E-value: 9.94e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17534717   123 LILEVRRHPCLYDVRDPKYRHGDCRTQAWGMIIDKLRYPGTVPSIYKQWKKHRDRYVREKRRLRNLGDPNVQdvSTWEMY 202
Cdd:pfam10545   1 LIELVREHPCLWDRSHPDYRNRDARERAWEEIAEELGSDVPVEDCKKRWKNLRDQYRRELRRKRTNSGELYK--SRWYYY 78

                  ....*.
gi 17534717   203 DDMAWI 208
Cdd:pfam10545  79 EELSFL 84
MADF_DNA_bdg pfam10545
Alcohol dehydrogenase transcription factor Myb/SANT-like; The myb/SANT-like domain in Adf-1 ...
10-90 1.41e-22

Alcohol dehydrogenase transcription factor Myb/SANT-like; The myb/SANT-like domain in Adf-1 (MADF) is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains.


Pssm-ID: 463144  Cd Length: 84  Bit Score: 89.27  E-value: 1.41e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17534717    10 LIEAVRHSRCLFDNTDRQYRNTEYKNRVWQRLVTVLGFDGDPRMLSARWKQLRDKYGKEKRKQK---YGNEKSSWQYFKH 86
Cdd:pfam10545   1 LIELVREHPCLWDRSHPDYRNRDARERAWEEIAEELGSDVPVEDCKKRWKNLRDQYRRELRRKRtnsGELYKSRWYYYEE 80

                  ....
gi 17534717    87 LHFL 90
Cdd:pfam10545  81 LSFL 84
 
Name Accession Description Interval E-value
MADF smart00595
subfamily of SANT domain;
9-94 5.86e-24

subfamily of SANT domain;


Pssm-ID: 214738  Cd Length: 89  Bit Score: 93.19  E-value: 5.86e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17534717      9 RLIEAVRHSRCLFDNTDRQYRNTEYKNRVWQRLVTVLGFDGDprMLSARWKQLRDKYGKEKRK----QKYGNEKSSWQYF 84
Cdd:smart00595   1 RLIELVRERPCLWDRRHPDYRNKEEKRKAWEEIAEELGLSVE--ECKKRWKNLRDRYRRELKRlqngKSGGGKKSKWEYF 78
                           90
                   ....*....|
gi 17534717     85 KHLHFLDPHM 94
Cdd:smart00595  79 DRLSFLRPVI 88
MADF smart00595
subfamily of SANT domain;
122-212 8.46e-24

subfamily of SANT domain;


Pssm-ID: 214738  Cd Length: 89  Bit Score: 92.81  E-value: 8.46e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17534717    122 NLILEVRRHPCLYDVRDPKYRHGDCRTQAWGMIIDKLRYpgTVPSIYKQWKKHRDRYVREKRRLRNLGDPNvQDVSTWEM 201
Cdd:smart00595   1 RLIELVRERPCLWDRRHPDYRNKEEKRKAWEEIAEELGL--SVEECKKRWKNLRDRYRRELKRLQNGKSGG-GKKSKWEY 77
                           90
                   ....*....|.
gi 17534717    202 YDDMAWIDQHL 212
Cdd:smart00595  78 FDRLSFLRPVI 88
MADF_DNA_bdg pfam10545
Alcohol dehydrogenase transcription factor Myb/SANT-like; The myb/SANT-like domain in Adf-1 ...
123-208 9.94e-24

Alcohol dehydrogenase transcription factor Myb/SANT-like; The myb/SANT-like domain in Adf-1 (MADF) is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains.


Pssm-ID: 463144  Cd Length: 84  Bit Score: 92.35  E-value: 9.94e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17534717   123 LILEVRRHPCLYDVRDPKYRHGDCRTQAWGMIIDKLRYPGTVPSIYKQWKKHRDRYVREKRRLRNLGDPNVQdvSTWEMY 202
Cdd:pfam10545   1 LIELVREHPCLWDRSHPDYRNRDARERAWEEIAEELGSDVPVEDCKKRWKNLRDQYRRELRRKRTNSGELYK--SRWYYY 78

                  ....*.
gi 17534717   203 DDMAWI 208
Cdd:pfam10545  79 EELSFL 84
MADF_DNA_bdg pfam10545
Alcohol dehydrogenase transcription factor Myb/SANT-like; The myb/SANT-like domain in Adf-1 ...
10-90 1.41e-22

Alcohol dehydrogenase transcription factor Myb/SANT-like; The myb/SANT-like domain in Adf-1 (MADF) is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains.


Pssm-ID: 463144  Cd Length: 84  Bit Score: 89.27  E-value: 1.41e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17534717    10 LIEAVRHSRCLFDNTDRQYRNTEYKNRVWQRLVTVLGFDGDPRMLSARWKQLRDKYGKEKRKQK---YGNEKSSWQYFKH 86
Cdd:pfam10545   1 LIELVREHPCLWDRSHPDYRNRDARERAWEEIAEELGSDVPVEDCKKRWKNLRDQYRRELRRKRtnsGELYKSRWYYYEE 80

                  ....
gi 17534717    87 LHFL 90
Cdd:pfam10545  81 LSFL 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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