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Conserved domains on  [gi|17537287|ref|NP_494563|]
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Fcf2 pre-rRNA processing C-terminal domain-containing protein [Caenorhabditis elegans]

Protein Classification

Fcf2 domain-containing protein( domain architecture ID 10554729)

Fcf2 domain-containing protein such as Saccharomyces cerevisiae rRNA-processing protein FCF2 and human deoxynucleotidyltransferase terminal-interacting protein 2

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Fcf2 pfam08698
Fcf2 pre-rRNA processing; This is a family of eukaryotic nucleolar proteins that are involved ...
 122-214 3.14e-41

Fcf2 pre-rRNA processing; This is a family of eukaryotic nucleolar proteins that are involved in pre-rRNA processing.


:

Pssm-ID: 462566  Cd Length: 93  Bit Score: 136.50  E-value: 3.14e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537287   122 KTKGSAWFNLPATELTDEHKRDLEFLQMRSTLDPLAHYRRNDRAVLPKYFQVGRVVDAPEDFYSSRMVRKERKKTMVDEI 201
Cdd:pfam08698   1 KTAGKDWFNLPAPELTPELKRDLQLLKLRNALDPKRFYKKDDKKKLPKYFQVGTIIEGPTEFYSSRLTRKERKRTLVEEL 80

                          90
                  ....*....|...
gi 17537287   202 LHNEESLSKAKKK 214
Cdd:pfam08698  81 LADEEAKKYFKRK 93
 
Name Accession Description Interval E-value
Fcf2 pfam08698
Fcf2 pre-rRNA processing; This is a family of eukaryotic nucleolar proteins that are involved ...
 122-214 3.14e-41

Fcf2 pre-rRNA processing; This is a family of eukaryotic nucleolar proteins that are involved in pre-rRNA processing.


Pssm-ID: 462566  Cd Length: 93  Bit Score: 136.50  E-value: 3.14e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537287   122 KTKGSAWFNLPATELTDEHKRDLEFLQMRSTLDPLAHYRRNDRAVLPKYFQVGRVVDAPEDFYSSRMVRKERKKTMVDEI 201
Cdd:pfam08698   1 KTAGKDWFNLPAPELTPELKRDLQLLKLRNALDPKRFYKKDDKKKLPKYFQVGTIIEGPTEFYSSRLTRKERKRTLVEEL 80

                          90
                  ....*....|...
gi 17537287   202 LHNEESLSKAKKK 214
Cdd:pfam08698  81 LADEEAKKYFKRK 93
 
Name Accession Description Interval E-value
Fcf2 pfam08698
Fcf2 pre-rRNA processing; This is a family of eukaryotic nucleolar proteins that are involved ...
 122-214 3.14e-41

Fcf2 pre-rRNA processing; This is a family of eukaryotic nucleolar proteins that are involved in pre-rRNA processing.


Pssm-ID: 462566  Cd Length: 93  Bit Score: 136.50  E-value: 3.14e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537287   122 KTKGSAWFNLPATELTDEHKRDLEFLQMRSTLDPLAHYRRNDRAVLPKYFQVGRVVDAPEDFYSSRMVRKERKKTMVDEI 201
Cdd:pfam08698   1 KTAGKDWFNLPAPELTPELKRDLQLLKLRNALDPKRFYKKDDKKKLPKYFQVGTIIEGPTEFYSSRLTRKERKRTLVEEL 80

                          90
                  ....*....|...
gi 17537287   202 LHNEESLSKAKKK 214
Cdd:pfam08698  81 LADEEAKKYFKRK 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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