NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|193203181|ref|NP_493128|]
View 

Acyl_transf_3 domain-containing protein [Caenorhabditis elegans]

Protein Classification

acyltransferase family protein( domain architecture ID 15196437)

acyltransferase family protein, containing a SGNH/GDSL hydrolase domain, may catalyze the acylation of one of a variety of substrates such as peptidoglycans or sugars

EC:  2.3.1.-
Gene Ontology:  GO:0016747

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
OafA COG1835
Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains ...
6-341 2.30e-44

Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 441440  Cd Length: 309  Bit Score: 160.96  E-value: 2.30e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181   6 PSKRQDLQAIRGLAILSVLGFHFYP--------NQFPNGYLGVDQFFVLSGFLMCMLLSKTSGMSIPAvFLYFYTRRLKR 77
Cdd:COG1835    5 RRRLPSLDGLRGLAALLVVLYHAFLlfppgplgGLLSGGFLGVDVFFVLSGFLITRSLLRRLERGGFS-LRRFYLRRFLR 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181  78 ILPMYFFAIFLAlialytvfsvttvlqnqysalralfftsnrkksededyfemlalavdifTHTWSLSVEVQYYLIVPVI 157
Cdd:COG1835   84 IYPAYLVVLLLT-------------------------------------------------GHLWSLSVELQFYLLFPLL 114
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181 158 FMIGDTLSeNKQLGYYCALSLSSLIY---YLASHTSVSFNSVFARSWQFLIGMVVYLKQRRESSLpenqlksdtgeNTLK 234
Cdd:COG1835  115 LLLLRRLR-RRLLALLALLALASLLLlalLLTGDPSAAYFLTLTRLWEFLLGALLALLYRRLRRL-----------RRLL 182
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181 235 YFFLVPMIFLAFFKYAIHATVMRLIFTIFTGGFILCSVDGDY-----FESRYLTYIGDISYTLYLVHWPIYAYC-----K 304
Cdd:COG1835  183 ALAGLALLLAALLLLDGAPFPGFGLLPLLAALLVLAAAAGSGllsrlLSSRPLVFLGDISYSLYLWHWPVLVLLlallgR 262
                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 193203181 305 LSYPESYSVLTSGLIVSILMSVVLYETFEKWYLKLSN 341
Cdd:COG1835  263 LLGPAPLLLLLLALALSLALAALSYRLVERPARRLKR 299
SGNH pfam19040
SGNH domain (fused to AT3 domains); This entry include SGNH domains that are found fused to ...
419-644 2.88e-22

SGNH domain (fused to AT3 domains); This entry include SGNH domains that are found fused to membrane domains from the AT3 families pfam01757.


:

Pssm-ID: 436916  Cd Length: 245  Bit Score: 96.21  E-value: 2.88e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181  419 DWCDYEMNGTEFKLAVLGNSFVENHLKMFIQECGQRSYNLRVVTVSACEPLAAYEPKPECKQELKEFVDFLEA--SQPDY 496
Cdd:pfam19040  14 GACRLGDGAGPPSVLLWGDSHAAALAPGLDEAAKERGVSVLQITRSGCPPLLLRLPDAACAAFNAAILEALALlpSKPDT 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181  497 AFILTRF---------FATGVVANSTSSTDLIYLEMREQMSKLLpNIKKKLYILDAFPRVDQPYTLHVAKDLKNGRNVDE 567
Cdd:pfam19040  94 VVLAARWslylegpafNDEGIGRDLSNTIAAFAAALRATVAALA-AAGKKVVLLGPVPEYVPRNARCLARAGGLLRDPLC 172
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 193203181  568 -IHKQLLDADNyKLARQRTEAIVKECGaKCELIDYEPLL-FNKTSNRFEffdSRGFLYFTvINHLSAHGLELVRPIYTK 644
Cdd:pfam19040 173 sIPRAEYRARN-ARVNAALDELAAKPG-KVRVIDPSPLFcDDGGRCSAL---DGTPLYFD-DNHLSPAGARLLAPLFAP 245
 
Name Accession Description Interval E-value
OafA COG1835
Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains ...
6-341 2.30e-44

Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441440  Cd Length: 309  Bit Score: 160.96  E-value: 2.30e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181   6 PSKRQDLQAIRGLAILSVLGFHFYP--------NQFPNGYLGVDQFFVLSGFLMCMLLSKTSGMSIPAvFLYFYTRRLKR 77
Cdd:COG1835    5 RRRLPSLDGLRGLAALLVVLYHAFLlfppgplgGLLSGGFLGVDVFFVLSGFLITRSLLRRLERGGFS-LRRFYLRRFLR 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181  78 ILPMYFFAIFLAlialytvfsvttvlqnqysalralfftsnrkksededyfemlalavdifTHTWSLSVEVQYYLIVPVI 157
Cdd:COG1835   84 IYPAYLVVLLLT-------------------------------------------------GHLWSLSVELQFYLLFPLL 114
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181 158 FMIGDTLSeNKQLGYYCALSLSSLIY---YLASHTSVSFNSVFARSWQFLIGMVVYLKQRRESSLpenqlksdtgeNTLK 234
Cdd:COG1835  115 LLLLRRLR-RRLLALLALLALASLLLlalLLTGDPSAAYFLTLTRLWEFLLGALLALLYRRLRRL-----------RRLL 182
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181 235 YFFLVPMIFLAFFKYAIHATVMRLIFTIFTGGFILCSVDGDY-----FESRYLTYIGDISYTLYLVHWPIYAYC-----K 304
Cdd:COG1835  183 ALAGLALLLAALLLLDGAPFPGFGLLPLLAALLVLAAAAGSGllsrlLSSRPLVFLGDISYSLYLWHWPVLVLLlallgR 262
                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 193203181 305 LSYPESYSVLTSGLIVSILMSVVLYETFEKWYLKLSN 341
Cdd:COG1835  263 LLGPAPLLLLLLALALSLALAALSYRLVERPARRLKR 299
SGNH pfam19040
SGNH domain (fused to AT3 domains); This entry include SGNH domains that are found fused to ...
419-644 2.88e-22

SGNH domain (fused to AT3 domains); This entry include SGNH domains that are found fused to membrane domains from the AT3 families pfam01757.


Pssm-ID: 436916  Cd Length: 245  Bit Score: 96.21  E-value: 2.88e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181  419 DWCDYEMNGTEFKLAVLGNSFVENHLKMFIQECGQRSYNLRVVTVSACEPLAAYEPKPECKQELKEFVDFLEA--SQPDY 496
Cdd:pfam19040  14 GACRLGDGAGPPSVLLWGDSHAAALAPGLDEAAKERGVSVLQITRSGCPPLLLRLPDAACAAFNAAILEALALlpSKPDT 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181  497 AFILTRF---------FATGVVANSTSSTDLIYLEMREQMSKLLpNIKKKLYILDAFPRVDQPYTLHVAKDLKNGRNVDE 567
Cdd:pfam19040  94 VVLAARWslylegpafNDEGIGRDLSNTIAAFAAALRATVAALA-AAGKKVVLLGPVPEYVPRNARCLARAGGLLRDPLC 172
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 193203181  568 -IHKQLLDADNyKLARQRTEAIVKECGaKCELIDYEPLL-FNKTSNRFEffdSRGFLYFTvINHLSAHGLELVRPIYTK 644
Cdd:pfam19040 173 sIPRAEYRARN-ARVNAALDELAAKPG-KVRVIDPSPLFcDDGGRCSAL---DGTPLYFD-DNHLSPAGARLLAPLFAP 245
Acyl_transf_3 pfam01757
Acyltransferase family; This family includes a range of acyltransferase enzymes. This domain ...
11-330 5.32e-17

Acyltransferase family; This family includes a range of acyltransferase enzymes. This domain is found in a wide range of acyltransferase enzymes, including, mainly, bacterial proteins which catalyze the transfer of acyl groups, other than amino-acyl, from one compound to another, such as Glucans biosynthesis protein C (OPGC) or protein OatA from Listeria monocytogenes serovar 1/2a and Staphylococcus aureus, an integral membrane protein which is responsible for O-acetylation at the C6-hydroxyl group of N-acetylmuramyl residues, forming the corresponding N,6-O-diacetylmuramic acid of the peptidoglycan, a modification that determines lysozyme resistance. This domain is also present in eukaryotic proteins, namely O-acyltransferase like protein (OACYL) from mouse and RHY1 (Regulator of hypoxia-inducible factor 1) and NRF6 (Nose resistant to fluoxetine protein 6) from Caenorhabditis elegans.


Pssm-ID: 426413 [Multi-domain]  Cd Length: 330  Bit Score: 82.60  E-value: 5.32e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181   11 DLQAIRGLAILSVLGFHFYPNQFPNGYL----------------GVDQFFVLSGFLMCMLLSKTSGMSipavflYFYTRR 74
Cdd:pfam01757   3 YLDLLRGIAILLVVIGHVLLAFGYGGFGlplelallflvflgrfGVPLFFFISGYLLAALRRRRRSLF------KFIKKR 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181   75 LKRILPMYFFAIFLALIALYTVFSVTTVLQNQYSALRALFFTsnrkksededyfemlaLAVDIFTHTWSLSVEVQYYLIV 154
Cdd:pfam01757  77 LLRLLIPYLLWSLLYALLLLLVAGLSVGGALLLLLLLNNGPL----------------FFLGVNGHLWFLSALFVFYLLL 140
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181  155 PVIFMIGDTLSENKQLGYYCALSLSSLIYYLA----SHTSVSFNSVFARSWQFLIGMVVYLKQRRESSLPENQLK--SDT 228
Cdd:pfam01757 141 PLLLRLLRKLKKSLLLLLLLLLLLLFLLYILIllvgVPFTVLVLFIFLYLPFFLLGALLARYRKRIRSKRLKLLIiiLLA 220
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181  229 GENTLKYFFLVPMIFLAFFKYAIHATVMRLIFTIFTGGFILCSV--DGDYFESRYLTYIGDISYTLYLVHWPIYAYCKLS 306
Cdd:pfam01757 221 LALLALILLLLFLFGLDPLALEFYGYPSLLLLLLGILLLLLLALllANLRSLRRLLSYLGKYSFGIYLIHPPILLLLGKL 300
                         330       340       350
                  ....*....|....*....|....*....|
gi 193203181  307 YPESY------SVLTSGLIVSILMSVVLYE 330
Cdd:pfam01757 301 LGLLGlpllpiLLFLLLLVLTLLVSVLLAR 330
 
Name Accession Description Interval E-value
OafA COG1835
Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains ...
6-341 2.30e-44

Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441440  Cd Length: 309  Bit Score: 160.96  E-value: 2.30e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181   6 PSKRQDLQAIRGLAILSVLGFHFYP--------NQFPNGYLGVDQFFVLSGFLMCMLLSKTSGMSIPAvFLYFYTRRLKR 77
Cdd:COG1835    5 RRRLPSLDGLRGLAALLVVLYHAFLlfppgplgGLLSGGFLGVDVFFVLSGFLITRSLLRRLERGGFS-LRRFYLRRFLR 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181  78 ILPMYFFAIFLAlialytvfsvttvlqnqysalralfftsnrkksededyfemlalavdifTHTWSLSVEVQYYLIVPVI 157
Cdd:COG1835   84 IYPAYLVVLLLT-------------------------------------------------GHLWSLSVELQFYLLFPLL 114
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181 158 FMIGDTLSeNKQLGYYCALSLSSLIY---YLASHTSVSFNSVFARSWQFLIGMVVYLKQRRESSLpenqlksdtgeNTLK 234
Cdd:COG1835  115 LLLLRRLR-RRLLALLALLALASLLLlalLLTGDPSAAYFLTLTRLWEFLLGALLALLYRRLRRL-----------RRLL 182
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181 235 YFFLVPMIFLAFFKYAIHATVMRLIFTIFTGGFILCSVDGDY-----FESRYLTYIGDISYTLYLVHWPIYAYC-----K 304
Cdd:COG1835  183 ALAGLALLLAALLLLDGAPFPGFGLLPLLAALLVLAAAAGSGllsrlLSSRPLVFLGDISYSLYLWHWPVLVLLlallgR 262
                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 193203181 305 LSYPESYSVLTSGLIVSILMSVVLYETFEKWYLKLSN 341
Cdd:COG1835  263 LLGPAPLLLLLLALALSLALAALSYRLVERPARRLKR 299
SGNH pfam19040
SGNH domain (fused to AT3 domains); This entry include SGNH domains that are found fused to ...
419-644 2.88e-22

SGNH domain (fused to AT3 domains); This entry include SGNH domains that are found fused to membrane domains from the AT3 families pfam01757.


Pssm-ID: 436916  Cd Length: 245  Bit Score: 96.21  E-value: 2.88e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181  419 DWCDYEMNGTEFKLAVLGNSFVENHLKMFIQECGQRSYNLRVVTVSACEPLAAYEPKPECKQELKEFVDFLEA--SQPDY 496
Cdd:pfam19040  14 GACRLGDGAGPPSVLLWGDSHAAALAPGLDEAAKERGVSVLQITRSGCPPLLLRLPDAACAAFNAAILEALALlpSKPDT 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181  497 AFILTRF---------FATGVVANSTSSTDLIYLEMREQMSKLLpNIKKKLYILDAFPRVDQPYTLHVAKDLKNGRNVDE 567
Cdd:pfam19040  94 VVLAARWslylegpafNDEGIGRDLSNTIAAFAAALRATVAALA-AAGKKVVLLGPVPEYVPRNARCLARAGGLLRDPLC 172
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 193203181  568 -IHKQLLDADNyKLARQRTEAIVKECGaKCELIDYEPLL-FNKTSNRFEffdSRGFLYFTvINHLSAHGLELVRPIYTK 644
Cdd:pfam19040 173 sIPRAEYRARN-ARVNAALDELAAKPG-KVRVIDPSPLFcDDGGRCSAL---DGTPLYFD-DNHLSPAGARLLAPLFAP 245
Acyl_transf_3 pfam01757
Acyltransferase family; This family includes a range of acyltransferase enzymes. This domain ...
11-330 5.32e-17

Acyltransferase family; This family includes a range of acyltransferase enzymes. This domain is found in a wide range of acyltransferase enzymes, including, mainly, bacterial proteins which catalyze the transfer of acyl groups, other than amino-acyl, from one compound to another, such as Glucans biosynthesis protein C (OPGC) or protein OatA from Listeria monocytogenes serovar 1/2a and Staphylococcus aureus, an integral membrane protein which is responsible for O-acetylation at the C6-hydroxyl group of N-acetylmuramyl residues, forming the corresponding N,6-O-diacetylmuramic acid of the peptidoglycan, a modification that determines lysozyme resistance. This domain is also present in eukaryotic proteins, namely O-acyltransferase like protein (OACYL) from mouse and RHY1 (Regulator of hypoxia-inducible factor 1) and NRF6 (Nose resistant to fluoxetine protein 6) from Caenorhabditis elegans.


Pssm-ID: 426413 [Multi-domain]  Cd Length: 330  Bit Score: 82.60  E-value: 5.32e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181   11 DLQAIRGLAILSVLGFHFYPNQFPNGYL----------------GVDQFFVLSGFLMCMLLSKTSGMSipavflYFYTRR 74
Cdd:pfam01757   3 YLDLLRGIAILLVVIGHVLLAFGYGGFGlplelallflvflgrfGVPLFFFISGYLLAALRRRRRSLF------KFIKKR 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181   75 LKRILPMYFFAIFLALIALYTVFSVTTVLQNQYSALRALFFTsnrkksededyfemlaLAVDIFTHTWSLSVEVQYYLIV 154
Cdd:pfam01757  77 LLRLLIPYLLWSLLYALLLLLVAGLSVGGALLLLLLLNNGPL----------------FFLGVNGHLWFLSALFVFYLLL 140
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181  155 PVIFMIGDTLSENKQLGYYCALSLSSLIYYLA----SHTSVSFNSVFARSWQFLIGMVVYLKQRRESSLPENQLK--SDT 228
Cdd:pfam01757 141 PLLLRLLRKLKKSLLLLLLLLLLLLFLLYILIllvgVPFTVLVLFIFLYLPFFLLGALLARYRKRIRSKRLKLLIiiLLA 220
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181  229 GENTLKYFFLVPMIFLAFFKYAIHATVMRLIFTIFTGGFILCSV--DGDYFESRYLTYIGDISYTLYLVHWPIYAYCKLS 306
Cdd:pfam01757 221 LALLALILLLLFLFGLDPLALEFYGYPSLLLLLLGILLLLLLALllANLRSLRRLLSYLGKYSFGIYLIHPPILLLLGKL 300
                         330       340       350
                  ....*....|....*....|....*....|
gi 193203181  307 YPESY------SVLTSGLIVSILMSVVLYE 330
Cdd:pfam01757 301 LGLLGlpllpiLLFLLLLVLTLLVSVLLAR 330
WecH COG3274
Surface polysaccharide O-acyltransferase WecH [Cell wall/membrane/envelope biogenesis];
1-328 1.22e-06

Surface polysaccharide O-acyltransferase WecH [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442505 [Multi-domain]  Cd Length: 345  Bit Score: 51.14  E-value: 1.22e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181   1 MSTKIPSKRQDLQAIRGLAILSVLGFH-------FYPNQFPNGYL-----------GVDQFFVLSGFLmcmLLSKTsgms 62
Cdd:COG3274    1 MPSSKKKRIVYLDLLRVLAIFAVVLIHvtapfvsSPGLIGSLNWWvanlldslsrfAVPLFFMISGAL---LLDRK---- 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181  63 iPAVFLYFYTRRLKRILPMYFFaiFLALIALYTVFSVTTVLQNQYSALRALFFTSnrkksededyfemlalavdIFTHTW 142
Cdd:COG3274   74 -KEDLKDFYKKRLRRILIPLLF--WSLIYLLFFTFLGGFSFNSLSEFLKNLLTGG-------------------VSYHLW 131
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181 143 SLSVEVQYYLIVPVIFMIGDTLSeNKQLGYYCALSL--SSLIYYLASHTSVSFNSVFARSWQFLIGMVV--YLKQRRESs 218
Cdd:COG3274  132 FLYMIIGLYLFTPLLRKLVRKAS-KRELLYFLLLWLilSLLLPYLNTLLGIDLFFTLTLFLGYLGYFLLgyYLARYKAR- 209
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193203181 219 lpenqLKsdtgeNTLKYFFLVPMIFLAF-----FKYAIHATVMRLIFTIFTGGFILCSV-----------DGDYFESRYL 282
Cdd:COG3274  210 -----LK-----KRRLIALLLFLVGLALtflgtYLLSLQTGKFNELFYSYLSPNVVLMSvalflllknlsFRSSKLSRLL 279
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*.
gi 193203181 283 TYIGDISYTLYLVHWPIYaycKLSYPESYSVLTSGLIVSILMSVVL 328
Cdd:COG3274  280 SRLSKYSFGIYLIHPLVL---DLLTKLGLNLLNINPLLGIPLVALL 322
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH