NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|25143671|ref|NP_491022|]
View 

Glycine-rich domain-containing protein 1 [Caenorhabditis elegans]

Protein Classification

glycine-rich domain-containing protein( domain architecture ID 18074126)

glycine-rich domain-containing protein similar to Arabidopsis thaliana glycine-rich domain-containing protein 1 and 2 (GRDP1/2), which are involved in development and stress responses

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
GRDP-like pfam07173
Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich ...
 130-261 3.00e-53

Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich domain- containing protein 1 and 2 (GRDP1/2). They are involved in development and stress responses.


:

Pssm-ID: 429333  Cd Length: 139  Bit Score: 180.98  E-value: 3.00e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25143671   130 YQEDCEKLVGKIIDHKLLSSDEIQKRYDSSVRAWDSYCSAEPYDFL-----ASQTPPTAYKTKCNYDIAGAVQRQRNFNY 204
Cdd:pfam07173   1 YRSDCESLFGKIIDHPAIDSSNEEYAYSRTRELWLRLYPDEPFDLEsnglsDIINEVSGDSSSISYDLVSAVKRQRDFYY 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 25143671   205 QVSLPHYTSAKFLSDAVKRYIQFLLLKQTYADQF--LTPCYDFDIIWHTHQVHPSSYLR 261
Cdd:pfam07173  81 QVSLPHYSDEVFLEAAVQRYKGFLYLLKRNPEEFsfLVPTYDIDLIWHTHQLHPISYAK 139
GRDP-like super family cl42056
Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich ...
 89-166 4.25e-07

Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich domain- containing protein 1 and 2 (GRDP1/2). They are involved in development and stress responses.


The actual alignment was detected with superfamily member COG4278:

Pssm-ID: 477928  Cd Length: 140  Bit Score: 50.01  E-value: 4.25e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25143671  89 HALRRYetFWLpmQAAHPDLNVIPPLDVHWVWHTHMLSPIHYQEDCEKLVGKIIDHK--LLSSDEIQKRYDSSVRAWDSY 166
Cdd:COG4278  38 EEYRRF--LYL--CAKAPGHPLMPSQVVDEVWHEHILYTRSYAEFCQRVLGRFLHHTptEGGGSERAKFQDALERTLRLY 113
 
Name Accession Description Interval E-value
GRDP-like pfam07173
Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich ...
 130-261 3.00e-53

Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich domain- containing protein 1 and 2 (GRDP1/2). They are involved in development and stress responses.


Pssm-ID: 429333  Cd Length: 139  Bit Score: 180.98  E-value: 3.00e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25143671   130 YQEDCEKLVGKIIDHKLLSSDEIQKRYDSSVRAWDSYCSAEPYDFL-----ASQTPPTAYKTKCNYDIAGAVQRQRNFNY 204
Cdd:pfam07173   1 YRSDCESLFGKIIDHPAIDSSNEEYAYSRTRELWLRLYPDEPFDLEsnglsDIINEVSGDSSSISYDLVSAVKRQRDFYY 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 25143671   205 QVSLPHYTSAKFLSDAVKRYIQFLLLKQTYADQF--LTPCYDFDIIWHTHQVHPSSYLR 261
Cdd:pfam07173  81 QVSLPHYSDEVFLEAAVQRYKGFLYLLKRNPEEFsfLVPTYDIDLIWHTHQLHPISYAK 139
COG4278 COG4278
Uncharacterized conserved protein [Function unknown];
89-166 4.25e-07

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 443419  Cd Length: 140  Bit Score: 50.01  E-value: 4.25e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25143671  89 HALRRYetFWLpmQAAHPDLNVIPPLDVHWVWHTHMLSPIHYQEDCEKLVGKIIDHK--LLSSDEIQKRYDSSVRAWDSY 166
Cdd:COG4278  38 EEYRRF--LYL--CAKAPGHPLMPSQVVDEVWHEHILYTRSYAEFCQRVLGRFLHHTptEGGGSERAKFQDALERTLRLY 113
GRDP-like pfam07173
Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich ...
 53-130 9.09e-07

Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich domain- containing protein 1 and 2 (GRDP1/2). They are involved in development and stress responses.


Pssm-ID: 429333  Cd Length: 139  Bit Score: 48.86  E-value: 9.09e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25143671    53 SAAITVDLVVAAQREANFLRMIDRkaPLLYEPDVVNHALRRYETFwLPMQAAHPDLNV--IPPLDVHWVWHTHMLSPIHY 130
Cdd:pfam07173  61 SSSISYDLVSAVKRQRDFYYQVSL--PHYSDEVFLEAAVQRYKGF-LYLLKRNPEEFSflVPTYDIDLIWHTHQLHPISY 137
 
Name Accession Description Interval E-value
GRDP-like pfam07173
Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich ...
 130-261 3.00e-53

Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich domain- containing protein 1 and 2 (GRDP1/2). They are involved in development and stress responses.


Pssm-ID: 429333  Cd Length: 139  Bit Score: 180.98  E-value: 3.00e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25143671   130 YQEDCEKLVGKIIDHKLLSSDEIQKRYDSSVRAWDSYCSAEPYDFL-----ASQTPPTAYKTKCNYDIAGAVQRQRNFNY 204
Cdd:pfam07173   1 YRSDCESLFGKIIDHPAIDSSNEEYAYSRTRELWLRLYPDEPFDLEsnglsDIINEVSGDSSSISYDLVSAVKRQRDFYY 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 25143671   205 QVSLPHYTSAKFLSDAVKRYIQFLLLKQTYADQF--LTPCYDFDIIWHTHQVHPSSYLR 261
Cdd:pfam07173  81 QVSLPHYSDEVFLEAAVQRYKGFLYLLKRNPEEFsfLVPTYDIDLIWHTHQLHPISYAK 139
COG4278 COG4278
Uncharacterized conserved protein [Function unknown];
89-166 4.25e-07

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 443419  Cd Length: 140  Bit Score: 50.01  E-value: 4.25e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25143671  89 HALRRYetFWLpmQAAHPDLNVIPPLDVHWVWHTHMLSPIHYQEDCEKLVGKIIDHK--LLSSDEIQKRYDSSVRAWDSY 166
Cdd:COG4278  38 EEYRRF--LYL--CAKAPGHPLMPSQVVDEVWHEHILYTRSYAEFCQRVLGRFLHHTptEGGGSERAKFQDALERTLRLY 113
GRDP-like pfam07173
Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich ...
 53-130 9.09e-07

Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich domain- containing protein 1 and 2 (GRDP1/2). They are involved in development and stress responses.


Pssm-ID: 429333  Cd Length: 139  Bit Score: 48.86  E-value: 9.09e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25143671    53 SAAITVDLVVAAQREANFLRMIDRkaPLLYEPDVVNHALRRYETFwLPMQAAHPDLNV--IPPLDVHWVWHTHMLSPIHY 130
Cdd:pfam07173  61 SSSISYDLVSAVKRQRDFYYQVSL--PHYSDEVFLEAAVQRYKGF-LYLLKRNPEEFSflVPTYDIDLIWHTHQLHPISY 137
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH