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Conserved domains on  [gi|16765463|ref|NP_461078|]
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putative inner membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1266 super family cl14673
Protein of unknown function (DUF1266); This family consists of several hypothetical bacterial ...
 138-229 2.15e-13

Protein of unknown function (DUF1266); This family consists of several hypothetical bacterial proteins of around 235 residues in length. Members of this family seem to be found exclusively in the Enterobacteria Salmonella typhimurium and Escherichia coli. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam06889:

Pssm-ID: 472703  Cd Length: 175  Bit Score: 65.93  E-value: 2.15e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16765463   138 LAFDCMRTAFLTRCIAGLGWCDVHQAWLVLLLNAQRAQDCFDSWEDYATAYVRARRVWLTLRDTPTALAGRDLQEATHYL 217
Cdd:pfam06889  83 LAWDLGRAVNLARWGYQAGYLSEEEAWEYILKAARLAQRYYSSWEEFAASYLLGRLFWQGEGEDDPASDYDEMWEAHREL 162

                          90
                  ....*....|...
gi 16765463   218 -QDPVSRWRQLPW 229
Cdd:pfam06889 163 lSDPDSPWRTLPW 175
 
Name Accession Description Interval E-value
DUF1266 pfam06889
Protein of unknown function (DUF1266); This family consists of several hypothetical bacterial ...
 138-229 2.15e-13

Protein of unknown function (DUF1266); This family consists of several hypothetical bacterial proteins of around 235 residues in length. Members of this family seem to be found exclusively in the Enterobacteria Salmonella typhimurium and Escherichia coli. The function of this family is unknown.


Pssm-ID: 462031  Cd Length: 175  Bit Score: 65.93  E-value: 2.15e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16765463   138 LAFDCMRTAFLTRCIAGLGWCDVHQAWLVLLLNAQRAQDCFDSWEDYATAYVRARRVWLTLRDTPTALAGRDLQEATHYL 217
Cdd:pfam06889  83 LAWDLGRAVNLARWGYQAGYLSEEEAWEYILKAARLAQRYYSSWEEFAASYLLGRLFWQGEGEDDPASDYDEMWEAHREL 162

                          90
                  ....*....|...
gi 16765463   218 -QDPVSRWRQLPW 229
Cdd:pfam06889 163 lSDPDSPWRTLPW 175
 
Name Accession Description Interval E-value
DUF1266 pfam06889
Protein of unknown function (DUF1266); This family consists of several hypothetical bacterial ...
 138-229 2.15e-13

Protein of unknown function (DUF1266); This family consists of several hypothetical bacterial proteins of around 235 residues in length. Members of this family seem to be found exclusively in the Enterobacteria Salmonella typhimurium and Escherichia coli. The function of this family is unknown.


Pssm-ID: 462031  Cd Length: 175  Bit Score: 65.93  E-value: 2.15e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16765463   138 LAFDCMRTAFLTRCIAGLGWCDVHQAWLVLLLNAQRAQDCFDSWEDYATAYVRARRVWLTLRDTPTALAGRDLQEATHYL 217
Cdd:pfam06889  83 LAWDLGRAVNLARWGYQAGYLSEEEAWEYILKAARLAQRYYSSWEEFAASYLLGRLFWQGEGEDDPASDYDEMWEAHREL 162

                          90
                  ....*....|...
gi 16765463   218 -QDPVSRWRQLPW 229
Cdd:pfam06889 163 lSDPDSPWRTLPW 175
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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