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Conserved domains on  [gi|16132006|ref|NP_418605|]
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DUF350 domain-containing inner membrane protein YjfL [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

DUF350 domain-containing protein( domain architecture ID 11467311)

DUF350 domain-containing protein similar to Escherichia coli inner membrane protein YjfL

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YjfL COG3766
Uncharacterized membrane protein YjfL, UPF0719 family [Function unknown];
1-132 9.40e-47

Uncharacterized membrane protein YjfL, UPF0719 family [Function unknown];


:

Pssm-ID: 442980 [Multi-domain]  Cd Length: 133  Bit Score: 147.24  E-value: 9.40e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132006   1 MHILDSLLAFSAYFFIGVAMVIIFLFIYSKITPHNEWQLIKNNNTAASLAFSGTLLGYVIPLSSAAINAVSIPDYFAWGG 80
Cdd:COG3766   2 MFLLAGLLAFLLYFAVALLLLIVFLAVYELITPYKEWELIRQGNLAAALALGGALIGFAIPLASAIAHSVSLLDFLIWGV 81

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|..
gi 16132006  81 IALVIQLLVFAGVRLYMPALSEKIINHNTAAGMFMGTAALAGGIFNAACMTW 132
Cdd:COG3766  82 VALVVQLLAYFLVRLLTPDLSEEIEEGNVAAGILLGAISIAVGLLNAACMTY 133
 
Name Accession Description Interval E-value
YjfL COG3766
Uncharacterized membrane protein YjfL, UPF0719 family [Function unknown];
1-132 9.40e-47

Uncharacterized membrane protein YjfL, UPF0719 family [Function unknown];


Pssm-ID: 442980 [Multi-domain]  Cd Length: 133  Bit Score: 147.24  E-value: 9.40e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132006   1 MHILDSLLAFSAYFFIGVAMVIIFLFIYSKITPHNEWQLIKNNNTAASLAFSGTLLGYVIPLSSAAINAVSIPDYFAWGG 80
Cdd:COG3766   2 MFLLAGLLAFLLYFAVALLLLIVFLAVYELITPYKEWELIRQGNLAAALALGGALIGFAIPLASAIAHSVSLLDFLIWGV 81

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|..
gi 16132006  81 IALVIQLLVFAGVRLYMPALSEKIINHNTAAGMFMGTAALAGGIFNAACMTW 132
Cdd:COG3766  82 VALVVQLLAYFLVRLLTPDLSEEIEEGNVAAGILLGAISIAVGLLNAACMTY 133
DUF350 pfam03994
Domain of Unknown Function (DUF350); This domain occurs in a small set of of bacterial ...
 13-65 2.26e-07

Domain of Unknown Function (DUF350); This domain occurs in a small set of of bacterial proteins. It has two transmembrane regions, and often occurs as tandem repeats. The are no conserved catalytic residues.


Pssm-ID: 427637  Cd Length: 54  Bit Score: 44.61  E-value: 2.26e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 16132006    13 YFFIGVAMVIIFLFIYSKITPHNEWQLIKNNNTAASLAFSGTLLGYVIPLSSA 65
Cdd:pfam03994   1 YGLVGIVLLLLGFFVFDLLTPGKLREEIKEGNNAAAIVLAGASIAVGLIIAAA 53
 
Name Accession Description Interval E-value
YjfL COG3766
Uncharacterized membrane protein YjfL, UPF0719 family [Function unknown];
1-132 9.40e-47

Uncharacterized membrane protein YjfL, UPF0719 family [Function unknown];


Pssm-ID: 442980 [Multi-domain]  Cd Length: 133  Bit Score: 147.24  E-value: 9.40e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132006   1 MHILDSLLAFSAYFFIGVAMVIIFLFIYSKITPHNEWQLIKNNNTAASLAFSGTLLGYVIPLSSAAINAVSIPDYFAWGG 80
Cdd:COG3766   2 MFLLAGLLAFLLYFAVALLLLIVFLAVYELITPYKEWELIRQGNLAAALALGGALIGFAIPLASAIAHSVSLLDFLIWGV 81

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|..
gi 16132006  81 IALVIQLLVFAGVRLYMPALSEKIINHNTAAGMFMGTAALAGGIFNAACMTW 132
Cdd:COG3766  82 VALVVQLLAYFLVRLLTPDLSEEIEEGNVAAGILLGAISIAVGLLNAACMTY 133
DUF350 pfam03994
Domain of Unknown Function (DUF350); This domain occurs in a small set of of bacterial ...
 13-65 2.26e-07

Domain of Unknown Function (DUF350); This domain occurs in a small set of of bacterial proteins. It has two transmembrane regions, and often occurs as tandem repeats. The are no conserved catalytic residues.


Pssm-ID: 427637  Cd Length: 54  Bit Score: 44.61  E-value: 2.26e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 16132006    13 YFFIGVAMVIIFLFIYSKITPHNEWQLIKNNNTAASLAFSGTLLGYVIPLSSA 65
Cdd:pfam03994   1 YGLVGIVLLLLGFFVFDLLTPGKLREEIKEGNNAAAIVLAGASIAVGLIIAAA 53
DUF350 pfam03994
Domain of Unknown Function (DUF350); This domain occurs in a small set of of bacterial ...
 78-130 2.29e-03

Domain of Unknown Function (DUF350); This domain occurs in a small set of of bacterial proteins. It has two transmembrane regions, and often occurs as tandem repeats. The are no conserved catalytic residues.


Pssm-ID: 427637  Cd Length: 54  Bit Score: 34.21  E-value: 2.29e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 16132006    78 WGGIALVIQLLVFAGVRLYMPA-LSEKIINHNTAAGMFMGTAALAGGIFNAACM 130
Cdd:pfam03994   1 YGLVGIVLLLLGFFVFDLLTPGkLREEIKEGNNAAAIVLAGASIAVGLIIAAAI 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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