|
Name |
Accession |
Description |
Interval |
E-value |
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
39-313 |
1.05e-72 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 225.80 E-value: 1.05e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 39 WFGIVYFGSLLTLLWQGFYTFDDFTmSVTPELTLANIRALF-NPANYDIILRTLTMAVAVTIASAILAFPMAWYMARYtS 117
Cdd:COG1176 21 WLLLFFVLPLLLLLVYSFTTRDPYG-GVVPGFTLENYARLFtDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARA-P 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 118 GKMKAFFYIAVMLPMWASYIVKAYAWTLLLAKDGVAQWFLQHLGL--EPLltafltlpavggnTLSTSGLGRFLVFLYIW 195
Cdd:COG1176 99 PRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGLidEPL-------------RLLYTEFAVVIGLVYVY 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 196 LPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLVGPP-GYFIGNMVY 274
Cdd:COG1176 166 LPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGkVLMIGNLIY 245
|
250 260 270
....*....|....*....|....*....|....*....
gi 16129401 275 SQQGAIGNMPMAAAFTLVPIILIALYLAFVKRLGAFDAL 313
Cdd:COG1176 246 QQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRL 284
|
|
| PRK10683 |
PRK10683 |
putrescine transporter subunit: membrane component of ABC superfamily; Provisional |
70-299 |
2.81e-27 |
|
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Pssm-ID: 182646 Cd Length: 317 Bit Score: 108.26 E-value: 2.81e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 70 LTLAN-IRALFNPANYDIILRTLTMAVAVTIASAILAFPMAWYMArYTSGKMKAFFYIAVMLPMWASYIVKAYAWTLLLA 148
Cdd:PRK10683 81 LNLGNfLQLTDDPLYFDAYLQSLQVAAISTLCCLLIGYPLAWAVA-HSKPSTRNILLLLVILPSWTSFLIRVYAWMGILK 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 149 KDGVAQWFLQHLGL--EPLltafltlpavggnTLSTSGLGRFLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPR 226
Cdd:PRK10683 160 NNGVLNNFLLWLGVidQPL-------------TILHTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPL 226
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16129401 227 QTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLV-GPPGYFIGNMVYSQQGAIGNMPMAAAFTLVPIILIAL 299
Cdd:PRK10683 227 KTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLgGPDSIMIGRVLWQEFFNNRDWPVASAVAIIMLLLLIV 300
|
|
| modB_ABC |
TIGR02141 |
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ... |
90-256 |
2.95e-15 |
|
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]
Pssm-ID: 273993 [Multi-domain] Cd Length: 208 Bit Score: 73.05 E-value: 2.95e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 90 TLTMAVAVTIASAILAFPMAWYMARYtSGKMKAFFYIAVMLPMWASYIVKAYAWTLLLAKDGVAQWFLQHLGLEplltaf 169
Cdd:TIGR02141 3 SLKVAVIATLLLLPLGIPVAWLLARS-RFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGKLLELFGIS------ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 170 ltlpavggntLSTSGLGRFLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSIFTF 249
Cdd:TIGR02141 76 ----------LVFTFTGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSF 145
|
....*..
gi 16129401 250 SLTLGDF 256
Cdd:TIGR02141 146 ARALGEF 152
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
87-301 |
4.21e-11 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 61.14 E-value: 4.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 87 ILRTLTMAVAVTIASAILAFPMAWYMARYTsGKMKAFFYIAVMLPMWASYIVKAYAWTLLLAkdgvaqwflqhLGLEPLL 166
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKR-GKLDRLLRRIIDLLLSLPSLVLGLLLVLLFG-----------VLLGWGI 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 167 TAFLTLPAVggntlstsglgrfLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSI 246
Cdd:cd06261 69 LPGLGLPAL-------------ILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLV 135
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 16129401 247 FTFSLTLGDFIVPQLVGPPGYFIGNMVYSQQGAIGNMPMAAAFTLVPIILIALYL 301
Cdd:cd06261 136 LAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
188-307 |
4.55e-06 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 46.14 E-value: 4.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 188 FLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLVGPPGY 267
Cdd:pfam00528 56 IILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPG 135
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 16129401 268 FIGNMVYSQQGAIGNM--PMAAAFTLVPIILIALYLAFVKRL 307
Cdd:pfam00528 136 LGLLLIEAILGYDYPEiqGPVLAAALILLLLNLLVDILQRLL 177
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
39-313 |
1.05e-72 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 225.80 E-value: 1.05e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 39 WFGIVYFGSLLTLLWQGFYTFDDFTmSVTPELTLANIRALF-NPANYDIILRTLTMAVAVTIASAILAFPMAWYMARYtS 117
Cdd:COG1176 21 WLLLFFVLPLLLLLVYSFTTRDPYG-GVVPGFTLENYARLFtDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARA-P 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 118 GKMKAFFYIAVMLPMWASYIVKAYAWTLLLAKDGVAQWFLQHLGL--EPLltafltlpavggnTLSTSGLGRFLVFLYIW 195
Cdd:COG1176 99 PRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGLidEPL-------------RLLYTEFAVVIGLVYVY 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 196 LPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLVGPP-GYFIGNMVY 274
Cdd:COG1176 166 LPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGkVLMIGNLIY 245
|
250 260 270
....*....|....*....|....*....|....*....
gi 16129401 275 SQQGAIGNMPMAAAFTLVPIILIALYLAFVKRLGAFDAL 313
Cdd:COG1176 246 QQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRL 284
|
|
| PRK10683 |
PRK10683 |
putrescine transporter subunit: membrane component of ABC superfamily; Provisional |
70-299 |
2.81e-27 |
|
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Pssm-ID: 182646 Cd Length: 317 Bit Score: 108.26 E-value: 2.81e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 70 LTLAN-IRALFNPANYDIILRTLTMAVAVTIASAILAFPMAWYMArYTSGKMKAFFYIAVMLPMWASYIVKAYAWTLLLA 148
Cdd:PRK10683 81 LNLGNfLQLTDDPLYFDAYLQSLQVAAISTLCCLLIGYPLAWAVA-HSKPSTRNILLLLVILPSWTSFLIRVYAWMGILK 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 149 KDGVAQWFLQHLGL--EPLltafltlpavggnTLSTSGLGRFLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPR 226
Cdd:PRK10683 160 NNGVLNNFLLWLGVidQPL-------------TILHTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPL 226
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16129401 227 QTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLV-GPPGYFIGNMVYSQQGAIGNMPMAAAFTLVPIILIAL 299
Cdd:PRK10683 227 KTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLgGPDSIMIGRVLWQEFFNNRDWPVASAVAIIMLLLLIV 300
|
|
| potB |
PRK09497 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
56-301 |
5.66e-27 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 181910 Cd Length: 285 Bit Score: 106.70 E-value: 5.66e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 56 FYTFDDFTMSVTPeLTLANIRALFNPANYDIILRTLTMAVAVTIASAILAFPMAWYMARyTSGKMKAFFYIAVMLPMWAS 135
Cdd:PRK09497 35 FLTRDDANFVKMV-FTLDNYTRLLDPLYAEVLLHSLNMALIATLACLVLGYPFAWFLAK-LPHKVRPLLLFLLIVPFWTN 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 136 YIVKAYAWTLLLAKDGVAQWFLQHLGL--EPLLTAFLTLPAVGGntlstsglgrflvFLYIWLPFMILPVQAALERLPPS 213
Cdd:PRK09497 113 SLIRIYGLKIFLSTKGYLNEFLLWLGVidTPIRIMFTESAVIIG-------------LVYILLPFMVLPLYSSIEKLDKP 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 214 LLQASADLGARPRQTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLV-GPPGYFIGNMVYSQQGAIGNMPMAAAFTLV 292
Cdd:PRK09497 180 LLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLgGAKNLLIGNVIKSQFLNIRDWPFGAATSIT 259
|
....*....
gi 16129401 293 PIILIALYL 301
Cdd:PRK09497 260 LTIVMGLML 268
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
40-307 |
6.64e-27 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 110.25 E-value: 6.64e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 40 FGIVYFGSLLTLLWQGFYTFDDftmsvtpeltlANIRALFNPANYDIILRTLTMAVAVTIASAILAFPMAWYMARYTSgK 119
Cdd:COG1178 20 LALLVLLPLLALLLRAFTDGLA-----------NFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDF-P 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 120 MKAFFYIAVMLPMWASYIVKAYAWTLLLAKDG-VAQWFLQHLGLEPLltAFLTLPAVggntlstsglgrFLVFLYIWLPF 198
Cdd:COG1178 88 GRRLLRWLLLLPLALPPYVVALAWIALFGPNGlLNTLLRALFGLEPP--DIYGLGGI------------ILVLVLFNYPY 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 199 MILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLVGPPGYFIGNMVYSQQG 278
Cdd:COG1178 154 VYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGGYTTLTTAIYQAWL 233
|
250 260
....*....|....*....|....*....
gi 16129401 279 AIGNMPMAAAFTLVPIILIALYLAFVKRL 307
Cdd:COG1178 234 GDFDLGAAAALALVLLLLVLLLLLLERRL 262
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
46-306 |
2.96e-26 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 104.42 E-value: 2.96e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 46 GSLLTLLWQGFytfddftmsvtpelTLANIRALF-NPANYDIILRTLTMAVAVTIASAILAFPMAWYMARYtSGKMKAFF 124
Cdd:COG1177 35 SWFLTFPPEGF--------------TLRWYAELFsDPRLLDALLNSLLIALLSTLLATVLGTPAALALARY-RFRGRRLL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 125 YIAVMLPMWASYIVKAYAwtlllakdgvaqwflqhlglepLLTAFLTLPAVGGNTLstsglgrfLVFLYIW--LPFMILP 202
Cdd:COG1177 100 LALLLLPLVVPGIVLGVA----------------------LLLLFSALGLSGGLWG--------LILAHVVftLPFVVLV 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 203 VQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLVGPPGY-----FIGNMVYSqq 277
Cdd:COG1177 150 VLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVttlpvYIYSMIRR-- 227
|
250 260 270
....*....|....*....|....*....|...
gi 16129401 278 gaiGNMPMAAA----FTLVPIILIALYLAFVKR 306
Cdd:COG1177 228 ---GISPEINAlstlLILLSLLLLLLAERLRRR 257
|
|
| ModB |
COG4149 |
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ... |
79-256 |
1.62e-21 |
|
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443320 [Multi-domain] Cd Length: 223 Bit Score: 90.49 E-value: 1.62e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 79 FNPANYDIILRTLTMAVAVTIASAILAFPMAWYMARyTSGKMKAFFYIAVMLPMWASYIVKAYAWTLLLAKDG-VAQWFL 157
Cdd:COG4149 1 LSPEDWSALWLSLKVALIATLLLLLLGIPLAWWLAR-TRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGpLGQLLE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 158 QHLGLEPlltAFLTLPAVggntlstsgLGRFLVFLyiwlPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLA 237
Cdd:COG4149 80 ELFGISL---VFTWTGAV---------LASVVVSL----PLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLA 143
|
170
....*....|....*....
gi 16129401 238 IPGIAAGSIFTFSLTLGDF 256
Cdd:COG4149 144 KPGILAGAVLAFARALGEF 162
|
|
| CysU |
COG0555 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
39-309 |
1.48e-19 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 86.34 E-value: 1.48e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 39 WFGIVYFGSLLTLLWQGFY-TFDDFTMSVTPELTLANIRalfnpanydiilRTLTMAVAVTIASAILAFPMAWYMARYtS 117
Cdd:COG0555 19 YLSLIVLLPLAALVLKAAGlGWAEFWAVLTSPRVLAALK------------LSLGTALIAALINLVFGLPLAWVLVRY-R 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 118 GKMKAFFYIAVMLPMWASYIVKAYAWTLLLAKDGVAQWFLQHLGLEPLLTAfltlpavggntlstsgLGRFLVFLYIWLP 197
Cdd:COG0555 86 FPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAPLGIKVAFTP----------------LGIVLAQTFVSLP 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 198 FMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSIFTFSLTLGDFivpqlvGPPGYFIGNMVYS-- 275
Cdd:COG0555 150 FVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEF------GAVIFIAGNLPMKte 223
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 16129401 276 -------QQGAIGNMPMAAAFTLVPIILIALYLAFVKRLGA 309
Cdd:COG0555 224 ilplliyLKLEEGDYAGATAIALVLLLISFLLLLLINLLQR 264
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
62-308 |
9.99e-19 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 86.37 E-value: 9.99e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 62 FTMSVTPELTLANIRA-LFNPANYDIILRTLTMAVAVTIASAILAFPMAWYMARYtSGKMKAFFYIAVMLPMWASYIVKA 140
Cdd:COG1178 314 LTKALDDNLTLDNYRFvLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRR-RGRLARLLDRLAMLPYAVPGIVLG 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 141 YAWtlllakdgvaqwflqhlgleplltaFLTLPAVGGNTLSTSGLGRFLVFLYIWLPFMILPVQAALERLPPSLLQASAD 220
Cdd:COG1178 393 LGL-------------------------LLLFNRPLPLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARS 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 221 LGARPRQTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLVGPPGYF-IGNMVYSQQGAiGNMPMAAAFTLVPIILIAL 299
Cdd:COG1178 448 LGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFEtLAVLIYQLASS-GRYGEAAALALLLVLVSLL 526
|
....*....
gi 16129401 300 YLAFVKRLG 308
Cdd:COG1178 527 PVLLLERLL 535
|
|
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
40-306 |
3.93e-18 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 82.88 E-value: 3.93e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 40 FGIVYFGSLLTLLWQGFYTFDDFTMSVTPeLTLANIRALF-NPANYDIILRTLTMAVAVTIASAILAFPMAWYMARytSG 118
Cdd:COG1175 31 LLVFVLYPLLYTLYLSFTDWNLLGPPPEF-VGLDNYARLFtDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNR--KL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 119 KMKAFFYIAVMLPMWASYIVKAYAWTLLLAKD-GVAQWFLQHLGLEP---LLTAFLTLPAVggntlstsglgrFLVFLYI 194
Cdd:COG1175 108 RGRGFFRTLFFLPWVISPVVVALIWKWLFNPDyGLLNALLGALGLEPinwLGDPSLALPAV------------IIVTVWK 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 195 WLPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLV--GPPGY---FI 269
Cdd:COG1175 176 GTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLtgGGPGNsttTL 255
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 16129401 270 GNMVYSQQGAIGNMPMAAA----FTLVPIILIALYLAFVKR 306
Cdd:COG1175 256 VLYIYQTAFQQFDFGYASAiavvLFLIILVLTLLQLRLLRR 296
|
|
| modB_ABC |
TIGR02141 |
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ... |
90-256 |
2.95e-15 |
|
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]
Pssm-ID: 273993 [Multi-domain] Cd Length: 208 Bit Score: 73.05 E-value: 2.95e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 90 TLTMAVAVTIASAILAFPMAWYMARYtSGKMKAFFYIAVMLPMWASYIVKAYAWTLLLAKDGVAQWFLQHLGLEplltaf 169
Cdd:TIGR02141 3 SLKVAVIATLLLLPLGIPVAWLLARS-RFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGKLLELFGIS------ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 170 ltlpavggntLSTSGLGRFLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSIFTF 249
Cdd:TIGR02141 76 ----------LVFTFTGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSF 145
|
....*..
gi 16129401 250 SLTLGDF 256
Cdd:TIGR02141 146 ARALGEF 152
|
|
| modB |
PRK09421 |
molybdate ABC transporter permease subunit; |
79-256 |
3.08e-13 |
|
molybdate ABC transporter permease subunit;
Pssm-ID: 181841 Cd Length: 229 Bit Score: 67.64 E-value: 3.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 79 FNPANYDIILRTLTMAVAVTIASAILAFPMAWYMARYTSgKMKAFFYIAVMLPMWASYIVKAYAWTLLLAKDG-VAQWFL 157
Cdd:PRK09421 3 LSDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRF-PGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGfIGQWLY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 158 QHLGLeplltafltlpavggnTLSTSGLGRFLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLA 237
Cdd:PRK09421 82 EWFGI----------------SFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLT 145
|
170
....*....|....*....
gi 16129401 238 IPGIAAGSIFTFSLTLGDF 256
Cdd:PRK09421 146 LPGIIAGTVLAFARSLGEF 164
|
|
| cysT |
CHL00187 |
sulfate transport protein; Provisional |
90-256 |
2.96e-12 |
|
sulfate transport protein; Provisional
Pssm-ID: 214388 [Multi-domain] Cd Length: 237 Bit Score: 65.04 E-value: 2.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 90 TLTMAVAVTIASAILAFPMAWYMARYtSGKMKAFFYIAVMLPMWASYIVKAYAWTLLLAKDGVAQWFLQHLGLeplltaf 169
Cdd:CHL00187 60 TLSMALIAALINGFFGLLIAWVLVRY-NFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHLLSHLGI------- 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 170 ltlpavggnTLSTSGLGRFLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSIFTF 249
Cdd:CHL00187 132 ---------QIVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTF 202
|
....*..
gi 16129401 250 SLTLGDF 256
Cdd:CHL00187 203 SRAIGEY 209
|
|
| PRK15050 |
PRK15050 |
2-aminoethylphosphonate transport system permease PhnU; Provisional |
63-309 |
3.02e-11 |
|
2-aminoethylphosphonate transport system permease PhnU; Provisional
Pssm-ID: 237888 [Multi-domain] Cd Length: 296 Bit Score: 63.10 E-value: 3.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 63 TMSVTPE--LTLANIRALF-NPANYDIILRTLTMAVAVTIASAILAFPMAWYMA--RYTSGKMKA-FFYIAVMLPmwaSY 136
Cdd:PRK15050 48 LQSLTGEhgLGLATYRAVLgSPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAfvPFPGASLVGrFIDTFVAFP---SF 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 137 IVkAYAWTLLLAKDGVAQWFLQ---HLGLEPLltAFLTLPAvggntlstsglGRFLVFLYIWLPFMILPVQAALERLPPS 213
Cdd:PRK15050 125 LI-TLAFTFLYGSAGSVNIALQrlfGLEAPPL--DFLYSPG-----------GVILAEITFYTPFVVRPLLAAFAQLDAR 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 214 LLQASADLGARPRQTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLVGPPGYF-IGNMVYSQQGAIGNMPMAAAFTLV 292
Cdd:PRK15050 191 QLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKDVVtLPVLIYSKAIVDFDYPTACAIAVV 270
|
250 260
....*....|....*....|.
gi 16129401 293 PII----LIALYLAFVKRLGA 309
Cdd:PRK15050 271 NLAlslgLYALYRRVNRRAGG 291
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
87-301 |
4.21e-11 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 61.14 E-value: 4.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 87 ILRTLTMAVAVTIASAILAFPMAWYMARYTsGKMKAFFYIAVMLPMWASYIVKAYAWTLLLAkdgvaqwflqhLGLEPLL 166
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKR-GKLDRLLRRIIDLLLSLPSLVLGLLLVLLFG-----------VLLGWGI 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 167 TAFLTLPAVggntlstsglgrfLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSI 246
Cdd:cd06261 69 LPGLGLPAL-------------ILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLV 135
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 16129401 247 FTFSLTLGDFIVPQLVGPPGYFIGNMVYSQQGAIGNMPMAAAFTLVPIILIALYL 301
Cdd:cd06261 136 LAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| 3a0106s02 |
TIGR00969 |
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ... |
75-256 |
5.43e-10 |
|
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]
Pssm-ID: 273370 Cd Length: 271 Bit Score: 58.90 E-value: 5.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 75 IRALFNPANYDIILRTLTMAVAVTIASAILAFPMAWYMARYTSgKMKAFFYIAVMLPMWASYIVKAYAWTLLLAKDGVAQ 154
Cdd:TIGR00969 50 WQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQF-PGRKLLDALIDLPFALSPVVAGLTLALLYGSNGWLG 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 155 WFLQHLGLEPLLTAfltlpavggntlstsgLGRFLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVL 234
Cdd:TIGR00969 129 SWLASFGIQIIFTW----------------PGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTL 192
|
170 180
....*....|....*....|..
gi 16129401 235 PLAIPGIAAGSIFTFSLTLGDF 256
Cdd:TIGR00969 193 PSIRWALLYGVVLTFARALGEF 214
|
|
| UgpE |
COG0395 |
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ... |
69-307 |
1.50e-09 |
|
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440164 [Multi-domain] Cd Length: 282 Bit Score: 57.80 E-value: 1.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 69 ELTLANIRALFNPANYDI-ILRTLTMAVAVTIASAILAFPMAWYMARYTSgKMKAFFYIAVMLPMWASYIVKAYAWTLLL 147
Cdd:COG0395 57 EFTLENYRAAFTDGPFGRyLLNSLIVAVVSTVLSLLLSSLAAYALARFRF-RGRKLLFLLILATLMIPGQVLLIPLYLLF 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 148 AKdgvaqwflqhLGLeplltafltlpavgGNTLstsgLGRFLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPRQ 227
Cdd:COG0395 136 RQ----------LGL--------------LNTY----WGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFR 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 228 TFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLVG------PPGYFIGNMVYSQQGAIGNMPMAAAFTLVPIILiaLYL 301
Cdd:COG0395 188 IFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLtspdlrTLPVGLASFQGQYGTDWGLLMAAAVIATLPVLI--LFL 265
|
....*.
gi 16129401 302 AFVKRL 307
Cdd:COG0395 266 FLQRYF 271
|
|
| potC |
PRK09500 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
196-269 |
2.07e-09 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 236542 [Multi-domain] Cd Length: 256 Bit Score: 57.30 E-value: 2.07e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16129401 196 LPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLVGPPGYFI 269
Cdd:PRK09500 139 LPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEI 212
|
|
| PhnU2 |
TIGR03262 |
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
72-303 |
2.81e-08 |
|
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 54.69 E-value: 2.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 72 LANIRALF-NPANYDIILRTLTMAVAVTIASAILAFPMAWYMARyTSGKMKAFFYIAVMLPMWASYIVKAYAWTLLLAKD 150
Cdd:TIGR03262 40 LANFAEYFaTPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTR-SRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQ 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 151 GVAQWFLQHLGLEPLL-----TAFLTLPAVggntlstsglgrflvflyiwlpFMILpvQAALERLPPSLLQASADLGARP 225
Cdd:TIGR03262 119 GLLKGLLGGFSIYGFWgivigEVFYTFPHA----------------------LMIL--VTALSLADGRLYEAARAMGASP 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16129401 226 RQTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLVGPPGYFIGNMVYSQQGAIGNMPMAAAFTLvpIILIALYLAF 303
Cdd:TIGR03262 175 WRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYNVLATDIYKQVIGQQNFPMGAVVGV--LLLLPALLAF 250
|
|
| PRK10971 |
PRK10971 |
sulfate/thiosulfate ABC transporter permease CysT; |
137-256 |
7.19e-07 |
|
sulfate/thiosulfate ABC transporter permease CysT;
Pssm-ID: 182873 Cd Length: 277 Bit Score: 49.75 E-value: 7.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 137 IVKAYAWTLLLAkdGVAQWFLQHLGL-------------EPLLTAFLTLP-----AVGGNTLST---------SGLGRF- 188
Cdd:PRK10971 56 VVAAYKVTLLSA--FVASIFNAVFGLlmawiltryrfpgRTLLDALMDLPfalptAVAGLTLASlfsvngwygEWLAKFd 133
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16129401 189 LVFLYIWL-----------PFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSIFTFSLTLGDF 256
Cdd:PRK10971 134 IKVTYTWLgiavamaftsiPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEF 212
|
|
| MalG |
COG3833 |
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ... |
69-301 |
2.75e-06 |
|
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];
Pssm-ID: 443045 [Multi-domain] Cd Length: 282 Bit Score: 47.84 E-value: 2.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 69 ELTLANIRALFNPANYDIILR-TLTMAVAVTIASAILAFPMAWYMARYT-SGKmkaffyiavmlpmwasyivKAYAWTLL 146
Cdd:COG3833 56 NFTLENYKKLFTETPFLRWFLnSLIVAVVTAIISVFLAALAAYAFSRFRfKGR-------------------KAGLLALL 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 147 LAkdgvaQWFLQHLGLEPLLTAFLTLpavgGNTLSTSGLGrfLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPR 226
Cdd:COG3833 117 LL-----QMFPAFLALVALYLLLSAL----GLLNTLLGLI--LVYLGGAIPFNTWLMKGYFDTIPKELDEAAKIDGASHF 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 227 QTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLV-GPPGYF---IG--NMVYSQQGAigNMPMAAAFTL---VPIILI 297
Cdd:COG3833 186 QIFFRIILPLAKPILAVVALLSFIGPWNDFILASVLlRSPENYtlaVGlySFVSDQRNT--NWGVFAAGAVlvaIPIVIL 263
|
....
gi 16129401 298 ALYL 301
Cdd:COG3833 264 FLFL 267
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
188-307 |
4.55e-06 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 46.14 E-value: 4.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 188 FLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLVGPPGY 267
Cdd:pfam00528 56 IILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPG 135
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 16129401 268 FIGNMVYSQQGAIGNM--PMAAAFTLVPIILIALYLAFVKRL 307
Cdd:pfam00528 136 LGLLLIEAILGYDYPEiqGPVLAAALILLLLNLLVDILQRLL 177
|
|
| PstA |
COG0581 |
ABC-type phosphate transport system, permease component [Inorganic ion transport and ... |
196-246 |
1.43e-05 |
|
ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440346 [Multi-domain] Cd Length: 259 Bit Score: 45.80 E-value: 1.43e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 16129401 196 LPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSI 246
Cdd:COG0581 126 LPVVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVI 176
|
|
| PstC |
COG0573 |
ABC-type phosphate transport system, permease component [Inorganic ion transport and ... |
162-250 |
1.64e-05 |
|
ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440338 [Multi-domain] Cd Length: 303 Bit Score: 45.85 E-value: 1.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 162 LEPLLTAFLTLPAVGGNTLSTSglgrflvflyIWLPFMILPVQA-----ALERLPPSLLQASADLGARPRQTFRYVVLPL 236
Cdd:COG0573 139 LVPLLRDLFPWPPSGFSLLTAG----------IVLAIMILPTITslsrdALRAVPRSLREAALALGATRWETIRKVVLPA 208
|
90
....*....|....
gi 16129401 237 AIPGIAAGSIFTFS 250
Cdd:COG0573 209 ARSGIIAAVILGLG 222
|
|
| phosphate_pstC |
TIGR02138 |
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ... |
95-254 |
3.99e-04 |
|
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]
Pssm-ID: 273992 [Multi-domain] Cd Length: 295 Bit Score: 41.48 E-value: 3.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 95 VAVTIASAILAFPM----AWYMARYTSGKMKAFFYIAVML---------PMWASYIVKAyawtllLAKDGVAQWFLQHLG 161
Cdd:TIGR02138 69 LITSLIALLIAVPVgigiAIFLSEIAPKRVRSVLKPVVELlagipsvvyGFWGLFVLVP------FLKPHFQPFLGSNLG 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 162 LEPLlTAFLTLPAVggntlstsglgrFLVFLYIwLPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGI 241
Cdd:TIGR02138 143 LIPL-FGGPILTAG------------IVLAIMI-LPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGI 208
|
170
....*....|...
gi 16129401 242 AAGSIFTFSLTLG 254
Cdd:TIGR02138 209 VGAVVLGLGRALG 221
|
|
| 3a0107s02c |
TIGR00974 |
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ... |
196-246 |
1.02e-03 |
|
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]
Pssm-ID: 273373 Cd Length: 271 Bit Score: 39.91 E-value: 1.02e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 16129401 196 LPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSI 246
Cdd:TIGR00974 140 LPVIIRTTEEALKAVPKDLREASLALGATKWQTIFKVVLPAALPGILTGII 190
|
|
| PRK10592 |
PRK10592 |
putrescine transporter subunit: membrane component of ABC superfamily; Provisional |
203-266 |
1.14e-03 |
|
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Pssm-ID: 182574 Cd Length: 281 Bit Score: 39.84 E-value: 1.14e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16129401 203 VQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLVGPPG 266
Cdd:PRK10592 159 ISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGPG 222
|
|
| TauC |
COG0600 |
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ... |
188-244 |
3.66e-03 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440365 [Multi-domain] Cd Length: 254 Bit Score: 38.21 E-value: 3.66e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 16129401 188 FLVFLYIWLPfMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAG 244
Cdd:COG0600 130 FVIFLGAFFP-ILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTG 185
|
|
| PRK10952 |
PRK10952 |
proline/glycine betaine ABC transporter permease ProW; |
207-301 |
6.10e-03 |
|
proline/glycine betaine ABC transporter permease ProW;
Pssm-ID: 236805 Cd Length: 355 Bit Score: 37.76 E-value: 6.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 207 LERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLVGPPGyfIGNMVYSqqgAIGNMPMA 286
Cdd:PRK10952 231 INQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGG--LGQMVLR---GIGRLDMG 305
|
90
....*....|....*.
gi 16129401 287 -AAFTLVPIILIALYL 301
Cdd:PRK10952 306 lATVGGVGIVILAIIL 321
|
|
| PRK10782 |
PRK10782 |
D-methionine ABC transporter permease MetI; |
197-303 |
9.71e-03 |
|
D-methionine ABC transporter permease MetI;
Pssm-ID: 182726 Cd Length: 217 Bit Score: 36.63 E-value: 9.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 197 PFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLVGPPGyfIGNMVYsQ 276
Cdd:PRK10782 102 PFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGG--LGQIGY-Q 178
|
90 100
....*....|....*....|....*..
gi 16129401 277 QGAIGNMPMAAAFTLVPIILIALYLAF 303
Cdd:PRK10782 179 YGYIGYNATVMNTVLVLLVILVYLIQF 205
|
|
| malG |
PRK10998 |
maltose ABC transporter permease MalG; |
192-300 |
9.99e-03 |
|
maltose ABC transporter permease MalG;
Pssm-ID: 182891 Cd Length: 296 Bit Score: 37.00 E-value: 9.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129401 192 LYIWLpfmilpVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQL---------- 261
Cdd:PRK10998 172 LHVWT------IKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLllrdvnsytl 245
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 16129401 262 -VGPPGYfignmVYSQQGAIGNMPMAAAFTLVPIILIALY 300
Cdd:PRK10998 246 aVGMQQY-----LNPQNYLWGDFAAAAVLSAIPITVVFLL 280
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