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Conserved domains on  [gi|16129319|ref|NP_415876|]
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protein YdaT [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YdaT_toxin super family cl05649
Putative bacterial toxin ydaT; YdaT_toxin is a family of putative bacterial toxins that are ...
 49-113 3.39e-10

Putative bacterial toxin ydaT; YdaT_toxin is a family of putative bacterial toxins that are neutralized by the putative antitoxin YdaS, UniProtKB:P76063, family pfam144549.


The actual alignment was detected with superfamily member pfam06254:

Pssm-ID: 368819  Cd Length: 88  Bit Score: 53.04  E-value: 3.39e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16129319    49 NNQQNIYhRWLKGETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRaLLAAQEALSTAIDA 113
Cdd:pfam06254   6 RNRQKLF-RWLDSDSRAAREKVRELTPAIQAVLPLERRARLINGDTFMYR-IAVAEKEFSEAKIA 68
 
Name Accession Description Interval E-value
YdaT_toxin pfam06254
Putative bacterial toxin ydaT; YdaT_toxin is a family of putative bacterial toxins that are ...
 49-113 3.39e-10

Putative bacterial toxin ydaT; YdaT_toxin is a family of putative bacterial toxins that are neutralized by the putative antitoxin YdaS, UniProtKB:P76063, family pfam144549.


Pssm-ID: 368819  Cd Length: 88  Bit Score: 53.04  E-value: 3.39e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16129319    49 NNQQNIYhRWLKGETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRaLLAAQEALSTAIDA 113
Cdd:pfam06254   6 RNRQKLF-RWLDSDSRAAREKVRELTPAIQAVLPLERRARLINGDTFMYR-IAVAEKEFSEAKIA 68
 
Name Accession Description Interval E-value
YdaT_toxin pfam06254
Putative bacterial toxin ydaT; YdaT_toxin is a family of putative bacterial toxins that are ...
 49-113 3.39e-10

Putative bacterial toxin ydaT; YdaT_toxin is a family of putative bacterial toxins that are neutralized by the putative antitoxin YdaS, UniProtKB:P76063, family pfam144549.


Pssm-ID: 368819  Cd Length: 88  Bit Score: 53.04  E-value: 3.39e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16129319    49 NNQQNIYhRWLKGETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRaLLAAQEALSTAIDA 113
Cdd:pfam06254   6 RNRQKLF-RWLDSDSRAAREKVRELTPAIQAVLPLERRARLINGDTFMYR-IAVAEKEFSEAKIA 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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