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Conserved domains on  [gi|16128128|ref|NP_414677|]
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fimbrial tip-adhesin YadC [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

fimbrial-like adhesin( domain architecture ID 10013322)

fimbrial-like adhesin similar to Escherichia coli fimbrial-like protein YadC which is part of the yadCKLM-htrE-yadVN fimbrial operon and could contribute to adhesion to various surfaces in specific environmental niches

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PRK09723 PRK09723
fimbrial-like adhesin;
1-412 0e+00

fimbrial-like adhesin;


:

Pssm-ID: 236617  Cd Length: 421  Bit Score: 628.35  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128    1 MKTIFRYILFLALYSCCNTVSA----YTSFIVGNNAGVD------NYRGPSTAAQMTFNYTSTASNLVFYKPTQLGPTGV 70
Cdd:PRK09723   1 MKKFFRYFLFLALCLSCYTASAgtddNVSYIVGNYYGVGpsdqkwNETGPSGDATVTFRYATSTNNLVFYKPTQLGPTGV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128   71 KMYWSYLDTGTGGGILYCNTSGRANPGPITIENAMVYSGKDYGGHKLFNTSVPGLYYTMLISRVWSAYdtiTDIQSPGIY 150
Cdd:PRK09723  81 KLYWSQLDTASGGGFLYCNRSGNTSGGPMTIEHAMVDSGKMYNGHKLFKTSVPGLYYTLEISNMWSAY---TNISSPGIY 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128  151 IGDPSNQEFFFSVTDSDLQTKGCNKADDYDKFWAIGGIVHNITVEFYTDTNFDPTLNQQVQLSSSSNYLYSFKAYSPGTK 230
Cdd:PRK09723 158 IGDSSEQYFNWSNPSEDTLYWSCNNANSTNKYWAVGGIVQTLTIEFYTDTNFNPTGAQQVSLSLSKNYLYSFKAYGAGSG 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128  231 VVDHSNHIYVNFTLNNVKLTLPTCFTSILTGPSVNGSTVRMGEYSSGTIKNGASPVPFDISLQNCIRVRNIETKLVTGKV 310
Cdd:PRK09723 238 INEHSYFLKIDFDLTNLKLTNPTCFTSALSGTSVTGSTVKMGEYSAEQIKNGATPVPFDISLQNCVRVRNIETKLVSTKV 317

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128  311 GTQNTQLLGNTLTGSTAAKGVGVLIEGLATSKNPLMTLKPNDTNSVYIDYET--EDDTSDGVYPNQGNGTSQPLHFQATL 388
Cdd:PRK09723 318 GTENKQLLGNTLTGNDAAKGVGVLIEGLKNSKSPQMTLKPNDSTSVYKDYETpdEDDTTGGIYPDQGNGTTQPLHFQATL 397

                        410       420
                 ....*....|....*....|....
gi 16128128  389 KQDGNIAIEPGEFKATSTFQVTYP 412
Cdd:PRK09723 398 KQDGNIAIEPGEFKATSTFQVTYP 421
 
Name Accession Description Interval E-value
PRK09723 PRK09723
fimbrial-like adhesin;
1-412 0e+00

fimbrial-like adhesin;


Pssm-ID: 236617  Cd Length: 421  Bit Score: 628.35  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128    1 MKTIFRYILFLALYSCCNTVSA----YTSFIVGNNAGVD------NYRGPSTAAQMTFNYTSTASNLVFYKPTQLGPTGV 70
Cdd:PRK09723   1 MKKFFRYFLFLALCLSCYTASAgtddNVSYIVGNYYGVGpsdqkwNETGPSGDATVTFRYATSTNNLVFYKPTQLGPTGV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128   71 KMYWSYLDTGTGGGILYCNTSGRANPGPITIENAMVYSGKDYGGHKLFNTSVPGLYYTMLISRVWSAYdtiTDIQSPGIY 150
Cdd:PRK09723  81 KLYWSQLDTASGGGFLYCNRSGNTSGGPMTIEHAMVDSGKMYNGHKLFKTSVPGLYYTLEISNMWSAY---TNISSPGIY 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128  151 IGDPSNQEFFFSVTDSDLQTKGCNKADDYDKFWAIGGIVHNITVEFYTDTNFDPTLNQQVQLSSSSNYLYSFKAYSPGTK 230
Cdd:PRK09723 158 IGDSSEQYFNWSNPSEDTLYWSCNNANSTNKYWAVGGIVQTLTIEFYTDTNFNPTGAQQVSLSLSKNYLYSFKAYGAGSG 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128  231 VVDHSNHIYVNFTLNNVKLTLPTCFTSILTGPSVNGSTVRMGEYSSGTIKNGASPVPFDISLQNCIRVRNIETKLVTGKV 310
Cdd:PRK09723 238 INEHSYFLKIDFDLTNLKLTNPTCFTSALSGTSVTGSTVKMGEYSAEQIKNGATPVPFDISLQNCVRVRNIETKLVSTKV 317

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128  311 GTQNTQLLGNTLTGSTAAKGVGVLIEGLATSKNPLMTLKPNDTNSVYIDYET--EDDTSDGVYPNQGNGTSQPLHFQATL 388
Cdd:PRK09723 318 GTENKQLLGNTLTGNDAAKGVGVLIEGLKNSKSPQMTLKPNDSTSVYKDYETpdEDDTTGGIYPDQGNGTTQPLHFQATL 397

                        410       420
                 ....*....|....*....|....
gi 16128128  389 KQDGNIAIEPGEFKATSTFQVTYP 412
Cdd:PRK09723 398 KQDGNIAIEPGEFKATSTFQVTYP 421
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
234-412 1.70e-12

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 65.45  E-value: 1.70e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128 234 HSNHIYVNFTlnnVKLTLPTCftsILTGPSVNGsTVRMGEYSSGTIKNG---ASPVPFDISLQNCIRVRNIETKL-VTGK 309
Cdd:COG3539  20 AAADGTVNFT---GTVVAPTC---TINTGSKDQ-TVDLGTVSTSDLNGVgstSGPKPFSIKLTNCDAGTSNSVKVtFTGT 92

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128 310 VGTQNTQLLGNTLTGStaAKGVGVLIEGLATSknplmTLKPNDTNSVYidyeteddtsdgVYPNQGNGTsqpLHFQATLK 389
Cdd:COG3539  93 ADSANPGLLANTGSGG--ASGVGIQLLDSDGT-----PIPLGTPSSAV------------TLTSNGSAT---LPFYARYV 150

                       170       180
                ....*....|....*....|...
gi 16128128 390 QDGNiAIEPGEFKATSTFQVTYP 412
Cdd:COG3539 151 ATGA-TVTAGSFNATATFTIDYQ 172
Fimbrial pfam00419
Fimbrial protein;
240-412 1.55e-07

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 50.51  E-value: 1.55e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128   240 VNFTLNnVKLTLPTCFTSILTGPsvngsTVRMGEYSSGTIKN---GASPVPFDISLQNCIRVRNIETKL-VTGKVGTQNT 315
Cdd:pfam00419   1 INFTGT-VTRVPATCKITAGTPI-----EVDFGQIPVNELNAggeGSRQKPFSITLECSSGSSAVKVTVgLFGTADASSP 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128   316 QLLGNTlTGSTAAKGVGVLIEGLATSknplmTLKPNDTNSvyidyeteddtsdGVYPNQGNGTSQPLHFQATLKQDGNIA 395
Cdd:pfam00419  75 NLLLTG-NGAGAATGVGIRLYDANGG-----ALPPNNGTS-------------SIPVSATAAVATGITFTASLVATTGGT 135

                         170
                  ....*....|....*..
gi 16128128   396 IEPGEFKATSTFQVTYP 412
Cdd:pfam00419 136 PTAGDFNATATIVVDYQ 152
 
Name Accession Description Interval E-value
PRK09723 PRK09723
fimbrial-like adhesin;
1-412 0e+00

fimbrial-like adhesin;


Pssm-ID: 236617  Cd Length: 421  Bit Score: 628.35  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128    1 MKTIFRYILFLALYSCCNTVSA----YTSFIVGNNAGVD------NYRGPSTAAQMTFNYTSTASNLVFYKPTQLGPTGV 70
Cdd:PRK09723   1 MKKFFRYFLFLALCLSCYTASAgtddNVSYIVGNYYGVGpsdqkwNETGPSGDATVTFRYATSTNNLVFYKPTQLGPTGV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128   71 KMYWSYLDTGTGGGILYCNTSGRANPGPITIENAMVYSGKDYGGHKLFNTSVPGLYYTMLISRVWSAYdtiTDIQSPGIY 150
Cdd:PRK09723  81 KLYWSQLDTASGGGFLYCNRSGNTSGGPMTIEHAMVDSGKMYNGHKLFKTSVPGLYYTLEISNMWSAY---TNISSPGIY 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128  151 IGDPSNQEFFFSVTDSDLQTKGCNKADDYDKFWAIGGIVHNITVEFYTDTNFDPTLNQQVQLSSSSNYLYSFKAYSPGTK 230
Cdd:PRK09723 158 IGDSSEQYFNWSNPSEDTLYWSCNNANSTNKYWAVGGIVQTLTIEFYTDTNFNPTGAQQVSLSLSKNYLYSFKAYGAGSG 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128  231 VVDHSNHIYVNFTLNNVKLTLPTCFTSILTGPSVNGSTVRMGEYSSGTIKNGASPVPFDISLQNCIRVRNIETKLVTGKV 310
Cdd:PRK09723 238 INEHSYFLKIDFDLTNLKLTNPTCFTSALSGTSVTGSTVKMGEYSAEQIKNGATPVPFDISLQNCVRVRNIETKLVSTKV 317

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128  311 GTQNTQLLGNTLTGSTAAKGVGVLIEGLATSKNPLMTLKPNDTNSVYIDYET--EDDTSDGVYPNQGNGTSQPLHFQATL 388
Cdd:PRK09723 318 GTENKQLLGNTLTGNDAAKGVGVLIEGLKNSKSPQMTLKPNDSTSVYKDYETpdEDDTTGGIYPDQGNGTTQPLHFQATL 397

                        410       420
                 ....*....|....*....|....
gi 16128128  389 KQDGNIAIEPGEFKATSTFQVTYP 412
Cdd:PRK09723 398 KQDGNIAIEPGEFKATSTFQVTYP 421
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
234-412 1.70e-12

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 65.45  E-value: 1.70e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128 234 HSNHIYVNFTlnnVKLTLPTCftsILTGPSVNGsTVRMGEYSSGTIKNG---ASPVPFDISLQNCIRVRNIETKL-VTGK 309
Cdd:COG3539  20 AAADGTVNFT---GTVVAPTC---TINTGSKDQ-TVDLGTVSTSDLNGVgstSGPKPFSIKLTNCDAGTSNSVKVtFTGT 92

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128 310 VGTQNTQLLGNTLTGStaAKGVGVLIEGLATSknplmTLKPNDTNSVYidyeteddtsdgVYPNQGNGTsqpLHFQATLK 389
Cdd:COG3539  93 ADSANPGLLANTGSGG--ASGVGIQLLDSDGT-----PIPLGTPSSAV------------TLTSNGSAT---LPFYARYV 150

                       170       180
                ....*....|....*....|...
gi 16128128 390 QDGNiAIEPGEFKATSTFQVTYP 412
Cdd:COG3539 151 ATGA-TVTAGSFNATATFTIDYQ 172
PRK15305 PRK15305
fimbrial protein StkG;
246-411 1.07e-08

fimbrial protein StkG;


Pssm-ID: 185205  Cd Length: 353  Bit Score: 56.58  E-value: 1.07e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128  246 NVKLTLPTCftsILTGPSvngsTVRMGEYSSGTIKNGAS-PVPFDISlQNCIRVRNIETKLVTGKVGTQNTqLLGNTLTG 324
Cdd:PRK15305 207 NIPFSEPTC---ILTAPT----TVNLGDWYRSDVEKDQTtEVPFQIT-GTCTGTIKVSFVAKSSYTNADKN-LFTNSITS 277

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128  325 S---TAAKGVGVLIEGLATSKnplmtLKPNDTNSvyidyeteddtsdgvYPNQGNGTSQPL-----HFQATLKQDGNIAI 396
Cdd:PRK15305 278 NssvTAAGGVGVKISSPAYSQ-----IHADSSPE---------------YIAVGNIIGMPVtsvnaNFKAKLVKTGTEAV 337

                        170
                 ....*....|....*
gi 16128128  397 EPGEFKATSTFQVTY 411
Cdd:PRK15305 338 TPGIFGSSVTFQVTY 352
Fimbrial pfam00419
Fimbrial protein;
240-412 1.55e-07

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 50.51  E-value: 1.55e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128   240 VNFTLNnVKLTLPTCFTSILTGPsvngsTVRMGEYSSGTIKN---GASPVPFDISLQNCIRVRNIETKL-VTGKVGTQNT 315
Cdd:pfam00419   1 INFTGT-VTRVPATCKITAGTPI-----EVDFGQIPVNELNAggeGSRQKPFSITLECSSGSSAVKVTVgLFGTADASSP 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128   316 QLLGNTlTGSTAAKGVGVLIEGLATSknplmTLKPNDTNSvyidyeteddtsdGVYPNQGNGTSQPLHFQATLKQDGNIA 395
Cdd:pfam00419  75 NLLLTG-NGAGAATGVGIRLYDANGG-----ALPPNNGTS-------------SIPVSATAAVATGITFTASLVATTGGT 135

                         170
                  ....*....|....*..
gi 16128128   396 IEPGEFKATSTFQVTYP 412
Cdd:pfam00419 136 PTAGDFNATATIVVDYQ 152
PRK09733 PRK09733
fimbrial-like protein;
262-411 8.99e-04

fimbrial-like protein;


Pssm-ID: 182053  Cd Length: 181  Bit Score: 39.93  E-value: 8.99e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128128  262 PSVNGSTVRMGEYSSGTIKNGAS--PVPFDISLQNCI------RVRNIETKLVTGKVGTQNTQLLGNTLTGST-AAKGVG 332
Cdd:PRK09733  43 PGDEDLTVNLGEVADTVLKSDQKslAEPFTIHLQDCMlsqggtTYSKAKVTFTTANTMTGQSDLLKNTKETEIgGATGVG 122

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16128128  333 VLiegLATSKNPLMTLKpndtNSVYIDYETEDdtsdgvypnqgngTSQPLHFQATLKQDGNIAIePGEFKATSTFQVTY 411
Cdd:PRK09733 123 VR---ILDSQSGEVTLG----TPVVITFNNTN-------------SYQELNFKARMESPSKDAT-PGNVYAQADYKIAY 180
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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