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Conserved domains on  [gi|15599901|ref|NP_253395|]
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ABC transporter permease [Pseudomonas aeruginosa PAO1]

Protein Classification

FecCD family ABC transporter permease( domain architecture ID 10001816)

FecCD family ABC transporter permease such as iron ABC transporter permease, which is the transmembrane subunit (TM) found in a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter involved in the import of iron and iron-containing compounds

CATH:  1.10.3470.10
Gene Ontology:  GO:0140359|GO:0042626
PubMed:  25750732|24638992
SCOP:  4002900
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 7-326 4.40e-78

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440374  Cd Length: 306  Bit Score: 240.74  E-value: 4.40e-78
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901   7 SLALGPVSLPLGDTLRAALrlaglplDGTGLAQAEMILGQIRLPRTLLGLAVGAVLALSGVAMQGLFRNPLADPGLVGVS 86
Cdd:COG0609   1 SLSLGAVPISLSDVLRALL-------GPDGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVS 73

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901  87 SGAALGAALAIVFGASLGglpaflaPYLLSLCAFGGGLGVTWLVYRLGRRDGQTSVATMLLAGIALTALSGAVIGLFTYL 166
Cdd:COG0609  74 SGAALGAVLAIVLGGGLS-------ALGLPLAAFLGALLAALLVYLLARRGGGLSPLRLVLAGVAVSALFSALTSLLLLL 146

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901 167 ADDATLRTLTFWNLGSLNGASYPRLWPLLLVALLVACWLPRRADALNALLLGESEARHLGFDVERLKAELVLCTALGVGA 246
Cdd:COG0609 147 ADPEQLRSIVFWLMGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGA 226

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901 247 AVAAAGMIGFIGLVVPHLIRLVAGPDHRTLLPASMMAGAILLLLADLLARLALAPAELPIGIVTALIGAPFFLYLLLRGR 326
Cdd:COG0609 227 AVAVAGPIGFVGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 7-326 4.40e-78

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 240.74  E-value: 4.40e-78
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901   7 SLALGPVSLPLGDTLRAALrlaglplDGTGLAQAEMILGQIRLPRTLLGLAVGAVLALSGVAMQGLFRNPLADPGLVGVS 86
Cdd:COG0609   1 SLSLGAVPISLSDVLRALL-------GPDGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVS 73

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901  87 SGAALGAALAIVFGASLGglpaflaPYLLSLCAFGGGLGVTWLVYRLGRRDGQTSVATMLLAGIALTALSGAVIGLFTYL 166
Cdd:COG0609  74 SGAALGAVLAIVLGGGLS-------ALGLPLAAFLGALLAALLVYLLARRGGGLSPLRLVLAGVAVSALFSALTSLLLLL 146

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901 167 ADDATLRTLTFWNLGSLNGASYPRLWPLLLVALLVACWLPRRADALNALLLGESEARHLGFDVERLKAELVLCTALGVGA 246
Cdd:COG0609 147 ADPEQLRSIVFWLMGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGA 226

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901 247 AVAAAGMIGFIGLVVPHLIRLVAGPDHRTLLPASMMAGAILLLLADLLARLALAPAELPIGIVTALIGAPFFLYLLLRGR 326
Cdd:COG0609 227 AVAVAGPIGFVGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
 38-327 1.03e-54

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 181.31  E-value: 1.03e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901   38 AQAEMILGQIRLPRTLLGLAVGAVLALSGVAMQGLFRNPLADPGLVGVSSGAALGAALAIVFGASLgglpafLAPYLLSL 117
Cdd:PRK03784  48 PRGELFVWQLRLPRTLAVLLVGAALAVSGAVMQALFENPLAEPGLLGVSNGAGVALVAAVLLGQGL------LPPWALSL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901  118 CAFGGGLGVTWLVYRLGRRdGQTSVATMLLAGIALTALSGAVIGLFTYLADDATLRTLTFWNLGSLNGASYPRLWpLLLV 197
Cdd:PRK03784 122 CAIAGALLITLILLRFARR-HRLSTSRLLLAGVALGIICSALMTWAVYFSTSLDLRQLMYWMMGGFGGVDWRQSW-LMLA 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901  198 ALLVACWLPRRADALNALLLGESEARHLGFDVERLKAELVLCTALGVGAAVAAAGMIGFIGLVVPHLIRLVAGPDHRTLL 277
Cdd:PRK03784 200 LLPVLIWLCCQGRPLNMLALGEISARQLGLPLWFWRNLLVLATGWLVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLL 279

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 15599901  278 PASMMAGAILLLLADLLARLALAPAELPIGIVTALIGAPFFLYLLLRGRA 327
Cdd:PRK03784 280 PGCALAGASLLLLADIVARLALASAELPIGVVTATLGAPVFIWLLLRSHR 329
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 1-324 2.09e-53

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 177.33  E-value: 2.09e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901     1 MLVLWLSLALGPVSLPLGDTLRAALRLAGlpldgtglAQAEMILGQIRLPRTLLGLAVGAVLALSGVAMQGLFRNPLADP 80
Cdd:pfam01032   3 LLLILLSLFIGAVKISPSDVFSALLGGDD--------SLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADP 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901    81 GLVGVSSGAALGAALAIVFGASLGglpaflaPYLLSLCAFGGGLGVTWLVYRLGRRDGQTSVATMLLAGIALTALSGAVI 160
Cdd:pfam01032  75 SILGISSGAALGAVLAILLGGSLS-------LFALPLAAFIGALLAALLVYFLSRGRGGASPLRLILAGIAVSALLSALT 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901   161 GLFTYLADDATLRTLTFWNLGSLNGASYPRLWPLLLVALLVACWLPRRADALNALLLGESEARHLGFDVERLKAELVLCT 240
Cdd:pfam01032 148 SLLLLLLNPEALQSILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLA 227

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901   241 ALGVGAAVAAAGMIGFIGLVVPHLIRLVAGPDHRTLLPASMMAGAILLLLADLLARLALAPAELPIGIVTALIGAPFFLY 320
Cdd:pfam01032 228 SLLTAASVAVVGPIGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIY 307


                  ....
gi 15599901   321 LLLR 324
Cdd:pfam01032 308 LLLR 311
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 7-326 2.35e-36

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 133.44  E-value: 2.35e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901     7 SLALGPVSLPLGDTLRAALRLAGLPLDGTGLAQAEM---ILGQIRLPRTLLGLAVGAVLALSGVAMQGLFRNPLADPGLV 83
Cdd:TIGR03869   9 AVTIGPADISVGEVWRSVAAHLGRGEGFPGVALSRLqdaIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901    84 GVSSGAALGAALAIVFGASLgglpaflapyLLSLCAFGGGLGVTWLVYRLGRRDGQTSVATMLLAGIALTALSGAVIGLF 163
Cdd:TIGR03869  89 GLSSGASLGAVAVLVLGVAV----------LLPVAAFAGALLALAATLGLARTLGTLTPTRTILAGLAVSQLCAAVTSFV 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901   164 TYL-ADDATLRTLTFWNLGSLNGASYPRLWPLLLVALLVACWLPRRADALNALLLGESEARHLGFDVERLKAELVLCTAL 242
Cdd:TIGR03869 159 IFWsATGDSYREILSWLMGSLAGATWGSVAIAGGALLVVGLVLLASGRVLDAFAFGDSSAAALGVDVERTRWLLLTLVAL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901   243 GVGAAVAAAGMIGFIGLVVPHLIRLVAGPDHRTLLPASMMAGAILLLLADLLARLALAPAELPIGIVTALIGAPFFLYLL 322
Cdd:TIGR03869 239 LTGALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLPVSALAGAVFLVWADTLARTVFAPRELPVGIITALIGAPVFAVLL 318


                  ....
gi 15599901   323 LRGR 326
Cdd:TIGR03869 319 YRSR 322
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 52-322 8.43e-29

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 111.49  E-value: 8.43e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901  52 TLLGLAVGAVLALSGVAMQGLFRNPLADPGLVGVSSGAALGAALAIVFGASLgglpaflAPYLLSLCAFGGGLGVTWLVY 131
Cdd:cd06550   1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGL-------SNYALGAFAFAGALAIALLVL 73

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901 132 RLGRRdGQTSVATMLLAGIALTALSGAVIGLFTYLADDaTLRTLTFWNLGSLNGASYPRLWPLLLVALLVACWLPRRADA 211
Cdd:cd06550  74 LLASR-GGLSPSKLILIGIVLSAFFSAGVILISLLSDD-SLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRK 151

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901 212 LNALLLGESEARHLGFDVERLKAELVLCTALGVGAAVAAAGMIGFIGLVVPHLIRLVAGPDHRTLLPASMMaGAILLLLA 291
Cdd:cd06550 152 LNLLTFDEDLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSAL-LGAILLLL 230

                       250       260       270
                ....*....|....*....|....*....|.
gi 15599901 292 DLLARLALAPAELPIGIVTALIGAPFFLYLL 322
Cdd:cd06550 231 GDLLSRTLLPSELPVGPVTALLGAPYFLYLL 261
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 7-326 4.40e-78

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 240.74  E-value: 4.40e-78
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901   7 SLALGPVSLPLGDTLRAALrlaglplDGTGLAQAEMILGQIRLPRTLLGLAVGAVLALSGVAMQGLFRNPLADPGLVGVS 86
Cdd:COG0609   1 SLSLGAVPISLSDVLRALL-------GPDGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVS 73

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901  87 SGAALGAALAIVFGASLGglpaflaPYLLSLCAFGGGLGVTWLVYRLGRRDGQTSVATMLLAGIALTALSGAVIGLFTYL 166
Cdd:COG0609  74 SGAALGAVLAIVLGGGLS-------ALGLPLAAFLGALLAALLVYLLARRGGGLSPLRLVLAGVAVSALFSALTSLLLLL 146

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901 167 ADDATLRTLTFWNLGSLNGASYPRLWPLLLVALLVACWLPRRADALNALLLGESEARHLGFDVERLKAELVLCTALGVGA 246
Cdd:COG0609 147 ADPEQLRSIVFWLMGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGA 226

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901 247 AVAAAGMIGFIGLVVPHLIRLVAGPDHRTLLPASMMAGAILLLLADLLARLALAPAELPIGIVTALIGAPFFLYLLLRGR 326
Cdd:COG0609 227 AVAVAGPIGFVGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
BtuC COG4139
ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and ...
 2-327 3.22e-55

ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and metabolism];


Pssm-ID: 443314  Cd Length: 327  Bit Score: 182.75  E-value: 3.22e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901   2 LVLWLSLALGPVSLPLGDTLRAAlrlaglpldgtglaqAEMILGQIRLPRTLLGLAVGAVLALSGVAMQGLFRNPLADPG 81
Cdd:COG4139  24 LLFVLSLCAGEVWIPPTQWLSEA---------------WQLFVWQLRLPRTLAAVLVGASLAVSGAVMQALFENPLAEPG 88

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901  82 LVGVSSGAALGAALAIVFGASlgglpaFLAPYLLSLCAFGGGLGVTWLVYRLGRRdgQTSVATMLLAGIALTALSGAVIG 161
Cdd:COG4139  89 LLGISNGAGVGLVLVVLLGGG------LLPPWLLSLAAIAGALLVTLLLLAFARR--RLSNARLLLIGVALGIICSAIMT 160

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901 162 LFTYLADDATLRTLTFWNLGSLNGASYPRLWpLLLVALLVACWLPRRADALNALLLGESEARHLGFDVERLKAELVLCTA 241
Cdd:COG4139 161 WAVYFSSSLDLRQLMYWMMGSFGGVDWRQLW-LLLALLPVLLWLCLQGKPLNLLLLGENQARQLGLSVHRWRNLLVLATG 239

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901 242 LGVGAAVAAAGMIGFIGLVVPHLIRLVAGPDHRTLLPASMMAGAILLLLADLLARLALAPAELPIGIVTALIGAPFFLYL 321
Cdd:COG4139 240 LLVGVSVALAGPIGFVGLVVPHLLRLLGTTDHRFLLPACALAGAALLLLADIIARLALSSAELPIGVVTATLGAPVFIWL 319


                ....*.
gi 15599901 322 LLRGRA 327
Cdd:COG4139 320 LLRRRK 325
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
 38-327 1.03e-54

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 181.31  E-value: 1.03e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901   38 AQAEMILGQIRLPRTLLGLAVGAVLALSGVAMQGLFRNPLADPGLVGVSSGAALGAALAIVFGASLgglpafLAPYLLSL 117
Cdd:PRK03784  48 PRGELFVWQLRLPRTLAVLLVGAALAVSGAVMQALFENPLAEPGLLGVSNGAGVALVAAVLLGQGL------LPPWALSL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901  118 CAFGGGLGVTWLVYRLGRRdGQTSVATMLLAGIALTALSGAVIGLFTYLADDATLRTLTFWNLGSLNGASYPRLWpLLLV 197
Cdd:PRK03784 122 CAIAGALLITLILLRFARR-HRLSTSRLLLAGVALGIICSALMTWAVYFSTSLDLRQLMYWMMGGFGGVDWRQSW-LMLA 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901  198 ALLVACWLPRRADALNALLLGESEARHLGFDVERLKAELVLCTALGVGAAVAAAGMIGFIGLVVPHLIRLVAGPDHRTLL 277
Cdd:PRK03784 200 LLPVLIWLCCQGRPLNMLALGEISARQLGLPLWFWRNLLVLATGWLVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLL 279

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 15599901  278 PASMMAGAILLLLADLLARLALAPAELPIGIVTALIGAPFFLYLLLRGRA 327
Cdd:PRK03784 280 PGCALAGASLLLLADIVARLALASAELPIGVVTATLGAPVFIWLLLRSHR 329
btuC PRK09535
cobalamin ABC transporter permease BtuC;
40-324 1.88e-54

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 181.87  E-value: 1.88e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901   40 AEMILGQIRLPRTLLGLAVGAVLALSGVAMQGLFRNPLADPGLVGVSSGAALGAALAIVFGASLgglpaflaPYLLSLCA 119
Cdd:PRK09535  87 AQTIVLQIRLPRILLAATVGFALAAAGTVMQGFFRNPMADPSIIGVSSGAAVGAVAAIVLPLAV--------PFGLQAAA 158

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901  120 FGGGLGVTWLVYRLGRRDGQTSVATMLLAGIALTALSGAVIGlFTYLADDATLRTLTFWNLGSLNGASYPRLWPLLLVAL 199
Cdd:PRK09535 159 FAGALVAAFGVYAIATENGRTPVATLLLAGVAVQTFLGAVIS-YLLLHSGESLRRAVYWLMGHLHGSTWSDVEVALPVVV 237

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901  200 LVACWLPRRADALNALLLGESEARHLGFDVERLKAELVLCTALGVGAAVAAAGMIGFIGLVVPHLIRLVAGPDHRTLLPA 279
Cdd:PRK09535 238 VGFVVLLAYARDLNVLLLGEEDAHTLGIEVERTKRLLLALASVVTAAAVAVAGVIGFVGLIVPHVMRLLVGPDHRILLPT 317

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 15599901  280 SMMagAILLLLADLLARLALAPAELPIGIVTALIGAPFFLYLLLR 324
Cdd:PRK09535 318 SAL--AGASFLVATDTVARSGPAEVPVGIVTAALGAPFFLYLLRT 360
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 1-324 2.09e-53

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 177.33  E-value: 2.09e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901     1 MLVLWLSLALGPVSLPLGDTLRAALRLAGlpldgtglAQAEMILGQIRLPRTLLGLAVGAVLALSGVAMQGLFRNPLADP 80
Cdd:pfam01032   3 LLLILLSLFIGAVKISPSDVFSALLGGDD--------SLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADP 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901    81 GLVGVSSGAALGAALAIVFGASLGglpaflaPYLLSLCAFGGGLGVTWLVYRLGRRDGQTSVATMLLAGIALTALSGAVI 160
Cdd:pfam01032  75 SILGISSGAALGAVLAILLGGSLS-------LFALPLAAFIGALLAALLVYFLSRGRGGASPLRLILAGIAVSALLSALT 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901   161 GLFTYLADDATLRTLTFWNLGSLNGASYPRLWPLLLVALLVACWLPRRADALNALLLGESEARHLGFDVERLKAELVLCT 240
Cdd:pfam01032 148 SLLLLLLNPEALQSILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLA 227

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901   241 ALGVGAAVAAAGMIGFIGLVVPHLIRLVAGPDHRTLLPASMMAGAILLLLADLLARLALAPAELPIGIVTALIGAPFFLY 320
Cdd:pfam01032 228 SLLTAASVAVVGPIGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIY 307


                  ....
gi 15599901   321 LLLR 324
Cdd:pfam01032 308 LLLR 311
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 7-326 2.35e-36

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 133.44  E-value: 2.35e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901     7 SLALGPVSLPLGDTLRAALRLAGLPLDGTGLAQAEM---ILGQIRLPRTLLGLAVGAVLALSGVAMQGLFRNPLADPGLV 83
Cdd:TIGR03869   9 AVTIGPADISVGEVWRSVAAHLGRGEGFPGVALSRLqdaIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901    84 GVSSGAALGAALAIVFGASLgglpaflapyLLSLCAFGGGLGVTWLVYRLGRRDGQTSVATMLLAGIALTALSGAVIGLF 163
Cdd:TIGR03869  89 GLSSGASLGAVAVLVLGVAV----------LLPVAAFAGALLALAATLGLARTLGTLTPTRTILAGLAVSQLCAAVTSFV 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901   164 TYL-ADDATLRTLTFWNLGSLNGASYPRLWPLLLVALLVACWLPRRADALNALLLGESEARHLGFDVERLKAELVLCTAL 242
Cdd:TIGR03869 159 IFWsATGDSYREILSWLMGSLAGATWGSVAIAGGALLVVGLVLLASGRVLDAFAFGDSSAAALGVDVERTRWLLLTLVAL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901   243 GVGAAVAAAGMIGFIGLVVPHLIRLVAGPDHRTLLPASMMAGAILLLLADLLARLALAPAELPIGIVTALIGAPFFLYLL 322
Cdd:TIGR03869 239 LTGALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLPVSALAGAVFLVWADTLARTVFAPRELPVGIITALIGAPVFAVLL 318


                  ....
gi 15599901   323 LRGR 326
Cdd:TIGR03869 319 YRSR 322
FepG COG4779
ABC-type enterobactin transport system, permease component [Inorganic ion transport and ...
 2-326 1.14e-32

ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443810  Cd Length: 344  Bit Score: 123.69  E-value: 1.14e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901   2 LVLWLSLALGPVSLPLGDTLRAalrlaglpLDGTGLAQAEMILGQIRLPRTLLGLAVGAVLALSGVAMQGLFRNPLADPG 81
Cdd:COG4779  35 ALAVLALTLGDYPLSPGDVLRA--------LLGEGDPGASFVVLELRLPRALAALLVGAALGLSGAIFQSLTRNPLASPD 106

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901  82 LVGVSSgaalgaalaivfGASLGGLPAFL----APYLLSLCAFGGGLGVTWLVYRLGRRDGqTSVATMLLAGIALTALSG 157
Cdd:COG4779 107 IIGITA------------GASAGAVAAIVvlggSGLAVALGALAGGLATALLVYLLAWRGG-VSGYRLILVGIGVSAMLT 173

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901 158 AVIGLFTYLADDATLRTLTFWNLGSLNGASYPRLWPLLLVALLVACWLPRRADALNALLLGESEARHLGFDVERLKAELV 237
Cdd:COG4779 174 AVNSYLLTRADLEDAQSAAVWLTGSLNGRTWEDVLPLAVALAVLLPLALALARRLRLLELGDDTAAALGVRVERTRLLLL 253

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901 238 LCTALGVGAAVAAAGMIGFIGLVVPHLIRLVAGPdHRTLLPASMMAGAILLLLADLLARLALAPAELPIGIVTALIGAPF 317
Cdd:COG4779 254 LVAVALAAVATAAAGPIAFVALAAPQIARRLTRS-PGPPLLPSALVGALLLLAADLVAQHLLAPVQLPVGVVTGALGGPY 332


                ....*....
gi 15599901 318 FLYLLLRGR 326
Cdd:COG4779 333 LLWLLIREN 341
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 52-322 8.43e-29

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 111.49  E-value: 8.43e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901  52 TLLGLAVGAVLALSGVAMQGLFRNPLADPGLVGVSSGAALGAALAIVFGASLgglpaflAPYLLSLCAFGGGLGVTWLVY 131
Cdd:cd06550   1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGL-------SNYALGAFAFAGALAIALLVL 73

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901 132 RLGRRdGQTSVATMLLAGIALTALSGAVIGLFTYLADDaTLRTLTFWNLGSLNGASYPRLWPLLLVALLVACWLPRRADA 211
Cdd:cd06550  74 LLASR-GGLSPSKLILIGIVLSAFFSAGVILISLLSDD-SLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRK 151

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901 212 LNALLLGESEARHLGFDVERLKAELVLCTALGVGAAVAAAGMIGFIGLVVPHLIRLVAGPDHRTLLPASMMaGAILLLLA 291
Cdd:cd06550 152 LNLLTFDEDLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSAL-LGAILLLL 230

                       250       260       270
                ....*....|....*....|....*....|.
gi 15599901 292 DLLARLALAPAELPIGIVTALIGAPFFLYLL 322
Cdd:cd06550 231 GDLLSRTLLPSELPVGPVTALLGAPYFLYLL 261
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
2-327 6.99e-28

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 113.78  E-value: 6.99e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901    2 LVLWLSLALGPVSLPLGDTLRAALRLAGLPLDgtglaqaEMILGQIRLPRTLLGLAVGAVLALSGVAMQGLFRNPLADPG 81
Cdd:PRK10577  23 LALALTLTQLSAALPLSQWLQALWGPDADDLE-------QLLLHYSRLPRLAIALLVGAALGLAGALLQQVLRNPLASPT 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901   82 LVGVSSGAALGAALAIVFGASLGGLPAFLApyllslcAFGGGLGVTWLVYRLGRRDGQTSVaTMLLAGIALTALSGAVIG 161
Cdd:PRK10577  96 TLGVAAGAQLALVLATLFAPALLALASQLA-------AFAGGLLAAALVFALAGGKRLSPL-RLVLAGMVVSLYLGALTT 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901  162 LFTYLADDaTLRTLTFWNLGSLNGASYP---RLWPLLLVALLVACWLPRRadaLNALLLGESEARHLGFDVERLKAELVL 238
Cdd:PRK10577 168 LLLLFNEQ-YLQGLFLWGAGSLAQNDWSgvqRLLPRLLVGLLLLLLLARP---LTLLGLGDDVARSLGLAVSLTRLAALA 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901  239 CTALGVGAAVAAAGMIGFIGLVVPHLIRLVAGPDHRTLLPASMMAGAILLLL--ADLLARLALAPAELPIGIVTALIGAP 316
Cdd:PRK10577 244 LAVLLSAAVVSAVGPIGFIGLAAPNLARLLGARRLRARLPLSPLIGALLLLLtdQLVRLLAGVGGELLPTGAVTALIGAP 323

                        330
                 ....*....|.
gi 15599901  317 FFLYLLLRGRA 327
Cdd:PRK10577 324 LLLWLLPRLRS 334
fecC PRK11228
iron-dicitrate ABC transporter permease FecC;
3-326 9.56e-28

iron-dicitrate ABC transporter permease FecC;


Pssm-ID: 183042  Cd Length: 323  Bit Score: 110.17  E-value: 9.56e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901    3 VLWLSL-ALGPVSLPLGDTLRAALrlaglPLDGTGLAQAemILGQIRLPRTLLGLAVGAVLALSGVAMQGLFRNPLADPG 81
Cdd:PRK11228  12 LFWLSLfCYSAIPISAADALNALL-----PGHTPTLPEA--LVQNLRLPRSLVAVLIGASLALAGALLQTLTHNPLASPS 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901   82 LVGVSSGAALGAALAIVFgaslggLPAFLAPYLLSLCAFGGGlGVTWLVYRL--GRRDGQTSVATMLLAGIALTALSGAV 159
Cdd:PRK11228  85 LLGINSGAALAMALTSAL------SPTPFAGYSLAFIAACGG-GLSWLLVMTagGGWRHTHDRNRLILAGIALSALCMAL 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901  160 IGLFTYLADDATLRTLtFWNLGSLNGASYPRLWPLLLVALLVACWLPRRADALNALLLGESEARHLGFDVERLKAELVLC 239
Cdd:PRK11228 158 TRITLLLAEDHAYGIF-YWLAGGVSHARWQEVWQLLPFVVTAVPVVLLLANQLNLLNLSDSSAHTLGVNLTRLRLVVNML 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901  240 TALGVGAAVAAAGMIGFIGLVVPHLIRLVAGPDHRTLLPASMMAGAILLLLADLLARLALAPAELPIGIVTALIGAPFFL 319
Cdd:PRK11228 237 VLLLVGACVSVAGPVAFIGLLVPHLARFWIGYDQRNVLPMSMLLGATLMLLADLLARALAFPGELPAGAVLALIGAPCFV 316


                 ....*..
gi 15599901  320 YLLLRGR 326
Cdd:PRK11228 317 WLARRRG 323
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
43-326 1.22e-26

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 107.05  E-value: 1.22e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901   43 ILGQIRLPRTLLGLAVGAVLALSGVAMQGLFRNPLADPGLVGVSSGAALGAALAIVFgaslggLPAfLAPYLLSLCAFGG 122
Cdd:PRK09777  46 VLMEYRLPRLLLALFVGAALAVSGVLVQGIVRNPLASPDILGVNHAASLASVGALLL------FPS-LPVMWLPLLAFIG 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901  123 GLGVTWLVYRLGrrdGQTSVATMLLAGIALTALSGAVIGlFTYLADDATLRTLTFWNLGSLNGASYPRLW---PLLLVAL 199
Cdd:PRK09777 119 GMAGLILLKMLA---GTHQPMKLALTGVALSALWASLTD-YLMLSRPQDINNALLWLTGSLWGRDWSFVKvalPWLILLL 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901  200 LVACWLPRRadaLNALLLGESEARHLGFDVERLKAELVLCTALGVGAAVAAAGMIGFIGLVVPHLIRLVAGPDHRTLLPA 279
Cdd:PRK09777 195 PLSLSFCRD---LDLLALGDARATTLGVSVPHTQFWALLLAVALTATGVAACGPISFIGLVVPHLMRSLVGGRHRRLLPV 271

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 15599901  280 SMMAGAILLLLADLLARLALAPAELPIGIVTALIGAPFFLYLLLRGR 326
Cdd:PRK09777 272 SALTGALLLLLADLLARIIHPPLELPAGVLTAIIGAPWFFWLLVRMR 318
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
38-327 1.57e-23

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 101.07  E-value: 1.57e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901   38 AQAEMILGQIRLPRTLLGLAVGAVLALSGVAMQGLFRNPLADPGLVGVSSGAALGAALAIVFGASLGGLPAFLApyllsl 117
Cdd:PRK10577 387 GQLLDALLPLRLPRLLAALLAGAMLAVAGTLLQRLTRNPLASPEVLGISSGAGLGVVLALFLVPGAGFGWLLAA------ 460

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901  118 cAFGGGLGVTWLVYRLGRRDGQTSvATMLLAGIALTALSGAVIGLFTYLADDATLRTLTfWNLGSLNGASYPRLWPLLLV 197
Cdd:PRK10577 461 -ALLGALAALALILLLARRGGFAP-ERLLLTGIALSALFTALIQLLLASGDPRAAQLLT-WLSGSTYGVTWAQALPLLIV 537

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901  198 ALLVACWLPRRADALNALLLGESEARHLGFDVERLKAELVLCTALGVGAAVAAAGMIGFIGLVVPHLIRLVAGPDHRTLL 277
Cdd:PRK10577 538 AVLLLALALLLRRWLDLLPLGDDTARALGLPVTRARLALLLLAALLTAAATATVGPLSFVGLMAPHLARMLGGRRARPQL 617

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 15599901  278 PASMMAGAILLLLADLLARLALAPAELPIGIVTALIGAPFFLYLLLRGRA 327
Cdd:PRK10577 618 VLAALLGALLMVLADWLGRTLLFPYQIPAGLLAALIGAPYFLWLLRRSRR 667
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
1-326 4.42e-23

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 97.47  E-value: 4.42e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901    1 MLVLWLSLALGPVSLPLGDTLRAalrlaglpLDGTGLAQAEMILGQIRLPRTLLGLAVGAVLALSGVAMQGLFRNPLADP 80
Cdd:PRK10441  21 IIATALSLLIGAKSLPASVVLEA--------LSGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADP 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901   81 GLVGVSSGAALGaalaIVFGASLGGlpaFLAPYLLSLCAFGGGLGVTWLVYRLGRRDG-QTSVATMLLAGIALTA-LSGA 158
Cdd:PRK10441  93 GLLGVNAGASFA----IVLGAALFG---YSSAQEQLAMAFAGALVASLIVAFTGSQGGgQLSPVRLTLAGVALAAvLEGL 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901  159 VIGLftYLADDATLRTLTFWNLGSLNGASYPRL---WPLLLVALLVACWLPRradALNALLLGESEARHLGFDVERLKAE 235
Cdd:PRK10441 166 TSGI--ALLNPDVYDQLRFWQAGSLDIRNLHTLkvvLIPVLIAGATALLLSR---ALNSLSLGSDTATALGSRVARTQLI 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901  236 LVLCTALGVGAAVAAAGMIGFIGLVVPHLIRLVAGPDHRTLLPASMMAGAILLLLADLLARLALAPAELpIGIVTALIGA 315
Cdd:PRK10441 241 GLLAITVLCGSATAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRLLVPGELR-VSVVSAFIGA 319

                        330
                 ....*....|.
gi 15599901  316 PFFLYLLLRGR 326
Cdd:PRK10441 320 PVLIFLVRRKT 330
PRK10440 PRK10440
iron-enterobactin ABC transporter permease;
1-324 5.61e-16

iron-enterobactin ABC transporter permease;


Pssm-ID: 182463  Cd Length: 330  Bit Score: 77.44  E-value: 5.61e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901    1 MLVLWlSLALGPVSLPLGDTLRAalrlaglpLDGTGLAQAEMILGQIRLPRTLLGLAVGAVLALSGVAMQGLFRNPLADP 80
Cdd:PRK10440  21 AAGLW-GLRSGAVTLETSQVFAA--------LMGDAPRSMTMVVTEWRLPRVLMALLIGAALGVSGAIFQSLMRNPLGSP 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901   81 GLVGVSSGAALGAALAIV-FGASLgglpaflapYLLSLCAFGGGLGVTWLVYRLGRRDGQTSVaTMLLAGIALTALSGAV 159
Cdd:PRK10440  92 DVMGFNTGAWSGVLVAMVlFGQDL---------TAIALAAMAGGIVTSLLVWLLAWRNGIDTF-RLIIIGIGVRAMLVAF 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901  160 IGLFTYLADDATLRTLTFWNLGSLNGASYPRLWPLLLVALLVACWLPRRADALNALLLGESEARHLGFDVERLKAELVLC 239
Cdd:PRK10440 162 NTWLLLKASLETALTAGLWNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLEMGDDTACALGVSVERSRLLLMLV 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599901  240 TALGVGAAVAAAGMIGFIGLVVPHLIRLVAGPDHRTLLPASMMaGAILLLLADLLARLALAPAELPIGIVTALIGAPFFL 319
Cdd:PRK10440 242 AVVLTAAATALAGPISFIALVAPHIARRLSGTARWGLTQAALC-GALLLLAADLCAQQLFMPYQLPVGVVTVSLGGIYLI 320


                 ....*
gi 15599901  320 YLLLR 324
Cdd:PRK10440 321 VLLIQ 325
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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