|
Name |
Accession |
Description |
Interval |
E-value |
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
2-915 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 1723.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 2 FAPLLKKLFGSKNERDVKRMAKAVQAINALEPQMVALSDEQLKAKTAEFQQRYAKGETLDQLLPEAFAVVREAGKRVMGM 81
Cdd:COG0653 1 MGKLLKKIFGSRNDRELKRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 82 RHFDVQLIGGMTLHDGKIAEMRTGEGKTLVGTLPVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGVVTPFQ 161
Cdd:COG0653 81 RHFDVQLIGGIVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVIVHGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 162 PPEDKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVVDEVDSILIDEARTPLIISGQAEDSSELYIKINK 241
Cdd:COG0653 161 DPEERRAAYAADITYGTNNEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSTDLYYRINK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 242 LIPRLKRqveevegkpteEGHYSIDEKTRQVELNEQGHQFIEDLLsqnGLlgegESLYSAHNLSLLTHVYAALRAHTLFH 321
Cdd:COG0653 241 LVPRLKR-----------DGDYTVDEKARTVTLTEEGIEKVEKLL---GI----DNLYDPENIELVHHLNQALRAHALFK 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 322 RNVEYIVQGDQILLIDEHTGRTMPGRRLSEGLHQAIEAKEGLPIQAESQTLASTTFQNYFRLYNKLAGMTGTADTEAFEF 401
Cdd:COG0653 303 RDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEF 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 402 RQIYGLDVVVIPTHRPIARKDFNDLVYLTQEEKYAAIITDIKQCQALGRPILVGTASIESSEYVSKLLQEAGIEHKVLNA 481
Cdd:COG0653 383 REIYGLDVVVIPTNRPMIRKDEPDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSIEKSELLSKLLKKEGIPHNVLNA 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 482 KYHEKEAEIIAQAGAPGSVTIATNMAGRGTDILLGGNWEVEVAALEN----PTEEQIAQIKAEWQKRHQQVIEAGGLHVI 557
Cdd:COG0653 463 KQHEREAEIVAQAGRPGAVTIATNMAGRGTDIVLGGNPEFLAAAELAdrglEWEEAIAKIKAEWQAEHEEVLEAGGLHVI 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 558 ASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEGR 637
Cdd:COG0653 543 GTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRIKGMMDKLGMEEGEPIEHKMVSKAIENAQKKVEGR 622
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 638 NFDIRKQLLEFDDVANEQRKVIYHMRNTLLSAEDVGETIKEFREETLSATINQHIPPQSLPEQWDIEGLEAALYSDFAVR 717
Cdd:COG0653 623 NFDIRKNLLEYDDVMNDQRKVIYEQRREILEGEDLSETILDMREDVIEDLVDEYIPEGSYPEQWDLEGLEEALKELFGLD 702
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 718 LPIQQWLDEDDkLYEETLRSKILEQIVAAYYEKEELAGAEALRAFEKQMLLRVLDDLWKDHLSTMDHLRHGIHLRGYAQK 797
Cdd:COG0653 703 LPIEEWLDEEG-LDEEELRERLLEAADEAYEEKEEELGPEVMRELERVVLLQVLDRKWREHLDAMDHLRQGIGLRGYAQK 781
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 798 NPKQEYKRESFTLFQELLDSIKRDTIRVLSHVQVRREDpaeeearlrrEAEELAKRMQFQHAEAPSMEQAvageeeelpe 877
Cdd:COG0653 782 DPLVEYKREAFELFEEMLDSIKEEVVRYLFRVQVRSEE----------EREEVEEERRENHADPAGEEEE---------- 841
|
890 900 910
....*....|....*....|....*....|....*...
gi 15599599 878 gpapVVPLEPVRNEQKIGRNEPCPCGSGKKYKHCHGQL 915
Cdd:COG0653 842 ----EAPKQPVRKGPKVGRNDPCPCGSGKKYKHCHGKL 875
|
|
| PRK12904 |
PRK12904 |
preprotein translocase subunit SecA; Reviewed |
5-915 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237259 [Multi-domain] Cd Length: 830 Bit Score: 1631.33 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 5 LLKKLFGSKNERDVKRMAKAVQAINALEPQMVALSDEQLKAKTAEFQQRYAKGETLDQLLPEAFAVVREAGKRVMGMRHF 84
Cdd:PRK12904 4 LLKKIFGSRNDRELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDDLLPEAFAVVREASKRVLGMRHF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 85 DVQLIGGMTLHDGKIAEMRTGEGKTLVGTLPVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGVVTPFQPPE 164
Cdd:PRK12904 84 DVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 165 DKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVVDEVDSILIDEARTPLIISGQAEDSSELYIKINKLIP 244
Cdd:PRK12904 164 ERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVP 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 245 RLKRqveevegkpteEGHYSIDEKTRQVELNEQGHQFIEDLLSQngllgegESLYSAHNLSLLTHVYAALRAHTLFHRNV 324
Cdd:PRK12904 244 TLEK-----------EGDYTVDEKSRTVGLTEEGIEKAEKLLGI-------ENLYDPENIALVHHLNQALRAHELFKRDV 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 325 EYIVQGDQILLIDEHTGRTMPGRRLSEGLHQAIEAKEGLPIQAESQTLASTTFQNYFRLYNKLAGMTGTADTEAFEFRQI 404
Cdd:PRK12904 306 DYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREI 385
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 405 YGLDVVVIPTHRPIARKDFNDLVYLTQEEKYAAIITDIKQCQALGRPILVGTASIESSEYVSKLLQEAGIEHKVLNAKYH 484
Cdd:PRK12904 386 YNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAKNH 465
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 485 EKEAEIIAQAGAPGSVTIATNMAGRGTDILLGGNWEVEVAA-LENPTEEQIAQIKAEWQKRHQQVIEAGGLHVIASERHE 563
Cdd:PRK12904 466 EREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAAlLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHE 545
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 564 SRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEGRNFDIRK 643
Cdd:PRK12904 546 SRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRVKGMMDRLGMKEGEAIEHKMVTRAIENAQKKVEGRNFDIRK 625
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 644 QLLEFDDVANEQRKVIYHMRNTLLSAEDVGETIKEFREETLSATINQHIPPQSLPEQWDIEGLEAALYSDFAVRLPIQQW 723
Cdd:PRK12904 626 QLLEYDDVMNDQRKVIYAQRNEILEGEDLSETILDMREDVIEDLVDAYIPPGSYEEDWDLEGLEEALKTDFGLELPIEEW 705
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 724 LDEDdkLYEETLRSKILEQIVAAYYEKEELAGAEALRAFEKQMLLRVLDDLWKDHLSTMDHLRHGIHLRGYAQKNPKQEY 803
Cdd:PRK12904 706 LEEG--LDEEELRERILEAAEEAYEEKEEELGEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLRGYAQKDPLQEY 783
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 804 KRESFTLFQELLDSIKRDTIRVLSHVQVrredpaeeearlrreaeelakrmqfqhaeapsmeqavageeeelpegpapvv 883
Cdd:PRK12904 784 KREGFELFEEMLDSIKEEVVRTLMKVQI---------------------------------------------------- 811
|
890 900 910
....*....|....*....|....*....|..
gi 15599599 884 plepvrneqkigrnEPCPCGSGKKYKHCHGQL 915
Cdd:PRK12904 812 --------------DPCPCGSGKKYKHCHGRL 829
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
28-818 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 1163.17 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 28 INALEPQMVALSDEQLKAKTAEFQQRYAK-GETLDQLLPEAFAVVREAGKRVMGMRHFDVQLIGGMTLHDGKIAEMRTGE 106
Cdd:TIGR00963 1 INALEEDYEKLSDEELRNKTNEFKDRLAKqGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 107 GKTLVGTLPVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGVVTPFQPPEDKRAAYAADITYGTNNEFGFDY 186
Cdd:TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 187 LRDNMAFSLDDKFQRELNFAVVDEVDSILIDEARTPLIISGQAEDSSELYIKINKLIPRLKRqveevegkpteEGHYSID 266
Cdd:TIGR00963 161 LRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYVQANKFAKALEK-----------EVDYEVD 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 267 EKTRQVELNEQGHQFIEDLLSQngllgegESLYSAHNLSLLTHVYAALRAHTLFHRNVEYIVQGDQILLIDEHTGRTMPG 346
Cdd:TIGR00963 230 EKNRAVLLTEQGMKKAEDLLGV-------DNLYDLENSPLIHYINNALKAKELFQKDVDYIVRDGEVVIVDEFTGRIMEG 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 347 RRLSEGLHQAIEAKEGLPIQAESQTLASTTFQNYFRLYNKLAGMTGTADTEAFEFRQIYGLDVVVIPTHRPIARKDFNDL 426
Cdd:TIGR00963 303 RRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRKDRPDL 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 427 VYLTQEEKYAAIITDIKQCQALGRPILVGTASIESSEYVSKLLQEAGIEHKVLNAKYHEKEAEIIAQAGAPGSVTIATNM 506
Cdd:TIGR00963 383 VYKTEEEKWKAVVEEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNM 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 507 AGRGTDILLggnwevevaalenpteeqiaqikaewqkrhQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRF 586
Cdd:TIGR00963 463 AGRGTDIKL------------------------------EEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 587 YLSLEDNLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEGRNFDIRKQLLEFDDVANEQRKVIYHMRNTL 666
Cdd:TIGR00963 513 FLSLEDNLMRIFGGDRLEGLMRRLGMDDDEPIESKMVSRALESAQKRVEGRNFDIRKQLLEYDDVLNKQREVIYAERRRV 592
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 667 LSAEDVGETIKEFREETLSATINQHIPPQSLPEQWDIEGLEAALYSDFavrlPIQQWLDEDD--KLYEETLRSKILEQIV 744
Cdd:TIGR00963 593 LESEDLSELILQMLESTLDRIVDAYINEEKLSEEWDLEGLIEKLKTLF----LLDGDLTPEDleNLTSEDLKELLLEKIR 668
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15599599 745 AAYYEKEELAGAEALRAFEKQMLLRVLDDLWKDHLSTMDHLRHGIHLRGYAQKNPKQEYKRESFTLFQELLDSI 818
Cdd:TIGR00963 669 AAYDEKEEQLESERMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRSYGQKDPLIEYKNEGFNLFEEMLEDI 742
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
6-402 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 765.05 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 6 LKKLFGSKNERDVKRMAKAVQAINALEPQMVALSDEQLKAKTAEFQQRYAKGETLDQLLPEAFAVVREAGKRVMGMRHFD 85
Cdd:smart00957 1 LKKLFGSKNDRELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRHFD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 86 VQLIGGMTLHDGKIAEMRTGEGKTLVGTLPVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGVVTPFQPPED 165
Cdd:smart00957 81 VQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 166 KRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVVDEVDSILIDEARTPLIISGQAED-SSELYIKINKLIP 244
Cdd:smart00957 161 RRAAYAADITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDeSSDLYHRADKFVP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 245 RLKRQVeevegkpteegHYSIDEKTRQVELNEQGHQFIEDLLSQngllgegESLYSAHNLSLLTHVYAALRAHTLFHRNV 324
Cdd:smart00957 241 RLKEDE-----------DYTVDEKSRTVELTEEGIEKAEKLLGI-------DNLYDPENIELLHHVNQALRAHYLFKRDV 302
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15599599 325 EYIVQGDQILLIDEHTGRTMPGRRLSEGLHQAIEAKEGLPIQAESQTLASTTFQNYFRLYNKLAGMTGTADTEAFEFR 402
Cdd:smart00957 303 DYIVRDGEVVIVDEFTGRVMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEFR 380
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
6-402 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 698.86 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 6 LKKLFGSKNERDVKRMAKAVQAINALEPQMVALSDEQLKAKTAEFQQRYAKGETLDQLLPEAFAVVREAGKRVMGMRHFD 85
Cdd:pfam07517 1 LKKIFGSPNERDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 86 VQLIGGMTLHDGKIAEMRTGEGKTLVGTLPVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGVVTPFQPPED 165
Cdd:pfam07517 81 VQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 166 KRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVVDEVDSILIDEARTPLIISGQAEDSSELYIKINKLIPR 245
Cdd:pfam07517 161 RRAAYNADITYGTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSELYREADRLVKS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 246 LKrqveevegkptEEGHYSIDEKTRQVELNEQGHQFIEDLLSQngllgegESLYSAHNLSLLTHVYAALRAHTLFHRNVE 325
Cdd:pfam07517 241 LE-----------EDGDYEIDEKSKNVELTEKGIEKIEKLLGI-------DNLYDPENVELLHHINQALKAHHLFKRDVD 302
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15599599 326 YIVQGDQILLIDEHTGRTMPGRRLSEGLHQAIEAKEGLPIQAESQTLASTTFQNYFRLYNKLAGMTGTADTEAFEFR 402
Cdd:pfam07517 303 YIVRDGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEFR 379
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
42-414 |
8.19e-141 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 417.71 E-value: 8.19e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 42 QLKAKTAEFQQRYAKGETLDQLLPEAFAVVREAGKRVMGMRHFDVQLIGGMTLHDGKIAEMRTGEGKTLVGTLPVYLNAL 121
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 122 SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGVVTPFQPPEDKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQR 201
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYGTNNELGFDYLRDNMVTSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 202 ELNFAVVDEVDSILIDEARTPLIISGqaedsselyikinkliprlkrqveevegkpteeghysidektrqvelneqghqf 281
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLIISG------------------------------------------------------ 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 282 iedllsqngllgegeslysahnlsllthvyaalrahtlfhrnveyivqgdqillidehtgrtmpgrrlseglhqaieake 361
Cdd:cd17928 --------------------------------------------------------------------------------
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 15599599 362 glpiqaesqTLASTTFQNYFRLYNKLAGMTGTADTEAFEFRQIYGLDVVVIPT 414
Cdd:cd17928 187 ---------TLATITFQNYFRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
2-915 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 1723.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 2 FAPLLKKLFGSKNERDVKRMAKAVQAINALEPQMVALSDEQLKAKTAEFQQRYAKGETLDQLLPEAFAVVREAGKRVMGM 81
Cdd:COG0653 1 MGKLLKKIFGSRNDRELKRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 82 RHFDVQLIGGMTLHDGKIAEMRTGEGKTLVGTLPVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGVVTPFQ 161
Cdd:COG0653 81 RHFDVQLIGGIVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVIVHGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 162 PPEDKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVVDEVDSILIDEARTPLIISGQAEDSSELYIKINK 241
Cdd:COG0653 161 DPEERRAAYAADITYGTNNEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSTDLYYRINK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 242 LIPRLKRqveevegkpteEGHYSIDEKTRQVELNEQGHQFIEDLLsqnGLlgegESLYSAHNLSLLTHVYAALRAHTLFH 321
Cdd:COG0653 241 LVPRLKR-----------DGDYTVDEKARTVTLTEEGIEKVEKLL---GI----DNLYDPENIELVHHLNQALRAHALFK 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 322 RNVEYIVQGDQILLIDEHTGRTMPGRRLSEGLHQAIEAKEGLPIQAESQTLASTTFQNYFRLYNKLAGMTGTADTEAFEF 401
Cdd:COG0653 303 RDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEF 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 402 RQIYGLDVVVIPTHRPIARKDFNDLVYLTQEEKYAAIITDIKQCQALGRPILVGTASIESSEYVSKLLQEAGIEHKVLNA 481
Cdd:COG0653 383 REIYGLDVVVIPTNRPMIRKDEPDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSIEKSELLSKLLKKEGIPHNVLNA 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 482 KYHEKEAEIIAQAGAPGSVTIATNMAGRGTDILLGGNWEVEVAALEN----PTEEQIAQIKAEWQKRHQQVIEAGGLHVI 557
Cdd:COG0653 463 KQHEREAEIVAQAGRPGAVTIATNMAGRGTDIVLGGNPEFLAAAELAdrglEWEEAIAKIKAEWQAEHEEVLEAGGLHVI 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 558 ASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEGR 637
Cdd:COG0653 543 GTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRIKGMMDKLGMEEGEPIEHKMVSKAIENAQKKVEGR 622
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 638 NFDIRKQLLEFDDVANEQRKVIYHMRNTLLSAEDVGETIKEFREETLSATINQHIPPQSLPEQWDIEGLEAALYSDFAVR 717
Cdd:COG0653 623 NFDIRKNLLEYDDVMNDQRKVIYEQRREILEGEDLSETILDMREDVIEDLVDEYIPEGSYPEQWDLEGLEEALKELFGLD 702
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 718 LPIQQWLDEDDkLYEETLRSKILEQIVAAYYEKEELAGAEALRAFEKQMLLRVLDDLWKDHLSTMDHLRHGIHLRGYAQK 797
Cdd:COG0653 703 LPIEEWLDEEG-LDEEELRERLLEAADEAYEEKEEELGPEVMRELERVVLLQVLDRKWREHLDAMDHLRQGIGLRGYAQK 781
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 798 NPKQEYKRESFTLFQELLDSIKRDTIRVLSHVQVRREDpaeeearlrrEAEELAKRMQFQHAEAPSMEQAvageeeelpe 877
Cdd:COG0653 782 DPLVEYKREAFELFEEMLDSIKEEVVRYLFRVQVRSEE----------EREEVEEERRENHADPAGEEEE---------- 841
|
890 900 910
....*....|....*....|....*....|....*...
gi 15599599 878 gpapVVPLEPVRNEQKIGRNEPCPCGSGKKYKHCHGQL 915
Cdd:COG0653 842 ----EAPKQPVRKGPKVGRNDPCPCGSGKKYKHCHGKL 875
|
|
| PRK12904 |
PRK12904 |
preprotein translocase subunit SecA; Reviewed |
5-915 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237259 [Multi-domain] Cd Length: 830 Bit Score: 1631.33 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 5 LLKKLFGSKNERDVKRMAKAVQAINALEPQMVALSDEQLKAKTAEFQQRYAKGETLDQLLPEAFAVVREAGKRVMGMRHF 84
Cdd:PRK12904 4 LLKKIFGSRNDRELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDDLLPEAFAVVREASKRVLGMRHF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 85 DVQLIGGMTLHDGKIAEMRTGEGKTLVGTLPVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGVVTPFQPPE 164
Cdd:PRK12904 84 DVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 165 DKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVVDEVDSILIDEARTPLIISGQAEDSSELYIKINKLIP 244
Cdd:PRK12904 164 ERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVP 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 245 RLKRqveevegkpteEGHYSIDEKTRQVELNEQGHQFIEDLLSQngllgegESLYSAHNLSLLTHVYAALRAHTLFHRNV 324
Cdd:PRK12904 244 TLEK-----------EGDYTVDEKSRTVGLTEEGIEKAEKLLGI-------ENLYDPENIALVHHLNQALRAHELFKRDV 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 325 EYIVQGDQILLIDEHTGRTMPGRRLSEGLHQAIEAKEGLPIQAESQTLASTTFQNYFRLYNKLAGMTGTADTEAFEFRQI 404
Cdd:PRK12904 306 DYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREI 385
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 405 YGLDVVVIPTHRPIARKDFNDLVYLTQEEKYAAIITDIKQCQALGRPILVGTASIESSEYVSKLLQEAGIEHKVLNAKYH 484
Cdd:PRK12904 386 YNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAKNH 465
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 485 EKEAEIIAQAGAPGSVTIATNMAGRGTDILLGGNWEVEVAA-LENPTEEQIAQIKAEWQKRHQQVIEAGGLHVIASERHE 563
Cdd:PRK12904 466 EREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAAlLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHE 545
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 564 SRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEGRNFDIRK 643
Cdd:PRK12904 546 SRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRVKGMMDRLGMKEGEAIEHKMVTRAIENAQKKVEGRNFDIRK 625
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 644 QLLEFDDVANEQRKVIYHMRNTLLSAEDVGETIKEFREETLSATINQHIPPQSLPEQWDIEGLEAALYSDFAVRLPIQQW 723
Cdd:PRK12904 626 QLLEYDDVMNDQRKVIYAQRNEILEGEDLSETILDMREDVIEDLVDAYIPPGSYEEDWDLEGLEEALKTDFGLELPIEEW 705
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 724 LDEDdkLYEETLRSKILEQIVAAYYEKEELAGAEALRAFEKQMLLRVLDDLWKDHLSTMDHLRHGIHLRGYAQKNPKQEY 803
Cdd:PRK12904 706 LEEG--LDEEELRERILEAAEEAYEEKEEELGEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLRGYAQKDPLQEY 783
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 804 KRESFTLFQELLDSIKRDTIRVLSHVQVrredpaeeearlrreaeelakrmqfqhaeapsmeqavageeeelpegpapvv 883
Cdd:PRK12904 784 KREGFELFEEMLDSIKEEVVRTLMKVQI---------------------------------------------------- 811
|
890 900 910
....*....|....*....|....*....|..
gi 15599599 884 plepvrneqkigrnEPCPCGSGKKYKHCHGQL 915
Cdd:PRK12904 812 --------------DPCPCGSGKKYKHCHGRL 829
|
|
| secA |
PRK12906 |
preprotein translocase subunit SecA; Reviewed |
3-832 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237260 [Multi-domain] Cd Length: 796 Bit Score: 1182.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 3 APLLKKLFGSkNERDVKRMAKAVQAINALEPQMVALSDEQLKAKTAEFQQRYAKGETLDQLLPEAFAVVREAGKRVMGMR 82
Cdd:PRK12906 2 ANILKKWFDN-DKRELKRLEKIADKVNALEDEYEKLSDEQLQAKTPEFRDRIKDGESLDDLLPEAFAVAREGAKRVLGLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 83 HFDVQLIGGMTLHDGKIAEMRTGEGKTLVGTLPVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGVVTPFQP 162
Cdd:PRK12906 81 PFDVQIIGGIVLHEGNIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 163 PEDKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVVDEVDSILIDEARTPLIISGQAEDSSELYIKINKL 242
Cdd:PRK12906 161 PDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 243 IPRLKRQVEEVEGKPTEEGHYSIDEKTRQVELNEQGHQFIEDLLSqngllgeGESLYSAHNLSLLTHVYAALRAHTLFHR 322
Cdd:PRK12906 241 VKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFG-------LDNLYDSENTALAHHIDQALRANYIMLK 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 323 NVEYIVQGDQILLIDEHTGRTMPGRRLSEGLHQAIEAKEGLPIQAESQTLASTTFQNYFRLYNKLAGMTGTADTEAFEFR 402
Cdd:PRK12906 314 DIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFR 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 403 QIYGLDVVVIPTHRPIARKDFNDLVYLTQEEKYAAIITDIKQCQALGRPILVGTASIESSEYVSKLLQEAGIEHKVLNAK 482
Cdd:PRK12906 394 EIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAK 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 483 YHEKEAEIIAQAGAPGSVTIATNMAGRGTDILLGGNwevevaalenpteeqiaqikaewqkrhqqVIEAGGLHVIASERH 562
Cdd:PRK12906 474 NHAKEAEIIMNAGQRGAVTIATNMAGRGTDIKLGPG-----------------------------VKELGGLAVIGTERH 524
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 563 ESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFASDRVKNFMKALGMQ-SGEAIEHRMVTNAIEKAQRKVEGRNFDI 641
Cdd:PRK12906 525 ESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRFGSDRVKAFLDRLGMNdDDQVIESRMITRQVESAQKRVEGNNYDT 604
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 642 RKQLLEFDDVANEQRKVIYHMRN-TLLSAEDVGETIKEFREETLSATINQHIPPQslPEQWDIEgleaALYSDFAVRLPI 720
Cdd:PRK12906 605 RKQLLQYDDVMREQREVIYKQRMqVINEDKDLKEVLMPMIKRTVDRQVQMYTQGD--KKDWDLD----ALRDFIVSAMPD 678
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 721 QQWLDEDDKLYE--ETLRSKILEQIVAAYYEKE-ELAGAEALRAFEKQMLLRVLDDLWKDHLSTMDHLRHGIHLRGYAQK 797
Cdd:PRK12906 679 EETFDFEDLKGKspEELKKRLLDIVEDNYAEKEkQLGDPTQMLEFEKVVILRVVDSHWTDHIDAMDQLRQSIGLRGYGQL 758
|
810 820 830
....*....|....*....|....*....|....*
gi 15599599 798 NPKQEYKRESFTLFQELLDSIKRDTIRVLSHVQVR 832
Cdd:PRK12906 759 NPLVEYQEEGYRMFEEMISNIDYDVTRLFMKAQIR 793
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
28-818 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 1163.17 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 28 INALEPQMVALSDEQLKAKTAEFQQRYAK-GETLDQLLPEAFAVVREAGKRVMGMRHFDVQLIGGMTLHDGKIAEMRTGE 106
Cdd:TIGR00963 1 INALEEDYEKLSDEELRNKTNEFKDRLAKqGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 107 GKTLVGTLPVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGVVTPFQPPEDKRAAYAADITYGTNNEFGFDY 186
Cdd:TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 187 LRDNMAFSLDDKFQRELNFAVVDEVDSILIDEARTPLIISGQAEDSSELYIKINKLIPRLKRqveevegkpteEGHYSID 266
Cdd:TIGR00963 161 LRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYVQANKFAKALEK-----------EVDYEVD 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 267 EKTRQVELNEQGHQFIEDLLSQngllgegESLYSAHNLSLLTHVYAALRAHTLFHRNVEYIVQGDQILLIDEHTGRTMPG 346
Cdd:TIGR00963 230 EKNRAVLLTEQGMKKAEDLLGV-------DNLYDLENSPLIHYINNALKAKELFQKDVDYIVRDGEVVIVDEFTGRIMEG 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 347 RRLSEGLHQAIEAKEGLPIQAESQTLASTTFQNYFRLYNKLAGMTGTADTEAFEFRQIYGLDVVVIPTHRPIARKDFNDL 426
Cdd:TIGR00963 303 RRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRKDRPDL 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 427 VYLTQEEKYAAIITDIKQCQALGRPILVGTASIESSEYVSKLLQEAGIEHKVLNAKYHEKEAEIIAQAGAPGSVTIATNM 506
Cdd:TIGR00963 383 VYKTEEEKWKAVVEEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNM 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 507 AGRGTDILLggnwevevaalenpteeqiaqikaewqkrhQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRF 586
Cdd:TIGR00963 463 AGRGTDIKL------------------------------EEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 587 YLSLEDNLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEGRNFDIRKQLLEFDDVANEQRKVIYHMRNTL 666
Cdd:TIGR00963 513 FLSLEDNLMRIFGGDRLEGLMRRLGMDDDEPIESKMVSRALESAQKRVEGRNFDIRKQLLEYDDVLNKQREVIYAERRRV 592
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 667 LSAEDVGETIKEFREETLSATINQHIPPQSLPEQWDIEGLEAALYSDFavrlPIQQWLDEDD--KLYEETLRSKILEQIV 744
Cdd:TIGR00963 593 LESEDLSELILQMLESTLDRIVDAYINEEKLSEEWDLEGLIEKLKTLF----LLDGDLTPEDleNLTSEDLKELLLEKIR 668
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15599599 745 AAYYEKEELAGAEALRAFEKQMLLRVLDDLWKDHLSTMDHLRHGIHLRGYAQKNPKQEYKRESFTLFQELLDSI 818
Cdd:TIGR00963 669 AAYDEKEEQLESERMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRSYGQKDPLIEYKNEGFNLFEEMLEDI 742
|
|
| PRK09200 |
PRK09200 |
preprotein translocase subunit SecA; Reviewed |
5-839 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 236408 [Multi-domain] Cd Length: 790 Bit Score: 964.40 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 5 LLKKLFGSKNERDVKRMAKAVQAINALEPQMVALSDEQLKAKTAEFQQRYAKGETLDQLLPEAFAVVREAGKRVMGMRHF 84
Cdd:PRK09200 1 MKKKLLGDIDKRRLKKYRKIVKQINKLEGKMSSLSDEELRQKTIEFKERLASGKTLDDILPEAFAVVREAAKRVLGMRPY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 85 DVQLIGGMTLHDGKIAEMRTGEGKTLVGTLPVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGVVTPFQP-P 163
Cdd:PRK09200 81 DVQLIGALVLHEGNIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDdA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 164 EDKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVVDEVDSILIDEARTPLIISGQAEDSSELYIKINKLI 243
Cdd:PRK09200 161 SEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 244 PRLKRQVeevegkpteegHYSIDEKTRQVELNEQGHQFIEDLLsqnGLlgegESLYSAHNLSLLTHVYAALRAHTLFHRN 323
Cdd:PRK09200 241 KTLEEDV-----------DYEFDEEKKEVWLTDQGIEKAESYF---GI----DNLYSLEHQVLYRHIILALRAHVLFKRD 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 324 VEYIVQGDQILLIDEHTGRTMPGRRLSEGLHQAIEAKEGLPIQAESQTLASTTFQNYFRLYNKLAGMTGTADTEAFEFRQ 403
Cdd:PRK09200 303 VDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFE 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 404 IYGLDVVVIPTHRPIARKDFNDLVYLTQEEKYAAIITDIKQCQALGRPILVGTASIESSEYVSKLLQEAGIEHKVLNAKY 483
Cdd:PRK09200 383 VYNMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKN 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 484 HEKEAEIIAQAGAPGSVTIATNMAGRGTDILLGgnwevevaalenpteeqiaqikaewqkrhQQVIEAGGLHVIASERHE 563
Cdd:PRK09200 463 AAKEAQIIAEAGQKGAVTVATNMAGRGTDIKLG-----------------------------EGVHELGGLAVIGTERME 513
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 564 SRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFASDRVKNFMKALGMQS---GEAIEHRMVTNAIEKAQRKVEGRNFD 640
Cdd:PRK09200 514 SRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFAPEELEKLKKKLKTDAqrlTGLLFNRKVHKIVVKAQRISEGAGYS 593
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 641 IRKQLLEFDDVANEQRKVIYHMRNTLLSAEDVG--ETIKEFREETLSATINQHIPPQSLPEQWDIEGLEAALysdfavrl 718
Cdd:PRK09200 594 AREYALELDDVINIQRDVVYKERNRLLEEDDRDliDIVILMIDVYLEAVAEEYLLEKSLLEEWIYENLSFQL-------- 665
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 719 piQQWLDEDDKLYEETLRSKILEQIVAAYYEK-EELAGAEALRAFEKQMLLRVLDDLWKDHLSTMDHLRHGIHLRGYAQK 797
Cdd:PRK09200 666 --NEILSNTNFPDKKEVVQFLLEEAEKQLKEKrNKLPSATLYNQFLRKVALKAIDQNWVEQVDALQQLKEGIGLRQYGQR 743
|
810 820 830 840
....*....|....*....|....*....|....*....|..
gi 15599599 798 NPKQEYKRESFTLFQELLDSIKRDTIRVLSHVQVRREDPAEE 839
Cdd:PRK09200 744 NPIREYQKEALESFEYMYENIKKDMVRNLLLSLLVFDKEGEI 785
|
|
| secA |
PRK12901 |
preprotein translocase subunit SecA; Reviewed |
5-914 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237256 [Multi-domain] Cd Length: 1112 Bit Score: 953.70 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 5 LLKKLFGSKNERDVKRMAKAVQAINALEPQMVALSDEQLKAKTAEFQQR------------------------------- 53
Cdd:PRK12901 4 FLKKLFGDKSERDLKEIQPIVEKIKAEYPELEALSNDELRAKTDEFKQYikeavadidakieelkaeaiesldideredi 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 54 -----------YAKGE-TLDQLLPEAFAVVREAGKRVMG----------------------------------------- 80
Cdd:PRK12901 84 yaqidklekeaYEILEkVLDEILPEAFAIVKETARRFAEneeievtatdfdrelaatkdfvtiegdkaiwknhwdaggne 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 81 ----MRHFDVQLIGGMTLHDGKIAEMRTGEGKTLVGTLPVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGV 156
Cdd:PRK12901 164 itwdMVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDC 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 157 VTPFQP-PEDKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVVDEVDSILIDEARTPLIISGQAEDSSE- 234
Cdd:PRK12901 244 IDKHQPnSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLIDDARTPLIISGPVPKGDDq 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 235 LYIKINKLIPRL---------------KRQVEE---VEG--------------KP-----TEEG---------------- 261
Cdd:PRK12901 324 EFEELKPRVERLveaqrklatqflaeaKKLIAEgdkKEGglallrayrglpknKAlikflSEEGikallqktenfymqdn 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 262 -----------HYSIDEKTRQVELNEQGHQFI----ED---------------LLSQNGLLGEGESL--------YSA-- 301
Cdd:PRK12901 404 nrempevdeelYFVIDEKNNSVELTDKGIDYItgndEDpdffvlpdigtelaeIENEGGLDEEEEAEkkeelfqdYSVks 483
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 302 ---HNLSLLthvyaaLRAHTLFHRNVEYIVQGDQILLIDEHTGRTMPGRRLSEGLHQAIEAKEGLPIQAESQTLASTTFQ 378
Cdd:PRK12901 484 ervHTLNQL------LKAYTLFEKDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQ 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 379 NYFRLYNKLAGMTGTADTEAFEFRQIYGLDVVVIPTHRPIARKDFNDLVYLTQEEKYAAIITDIKQCQALGRPILVGTAS 458
Cdd:PRK12901 558 NYFRMYHKLAGMTGTAETEAGEFWDIYKLDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTS 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 459 IESSEYVSKLLQEAGIEHKVLNAKYHEKEAEIIAQAGAPGSVTIATNMAGRGTDILLGgnwevevaalenpteeqiaqik 538
Cdd:PRK12901 638 VEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLS---------------------- 695
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 539 aewqkrhQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFASDRVKNFMKALGMQSGEAI 618
Cdd:PRK12901 696 -------PEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFGSERIAKVMDRMGLKEGEVI 768
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 619 EHRMVTNAIEKAQRKVEGRNFDIRKQLLEFDDVANEQRKVIYHMRNTLLSAEDVGETIKEFREETLSATINQHippqslP 698
Cdd:PRK12901 769 QHSMISKSIERAQKKVEENNFGIRKRLLEYDDVMNSQREVIYKRRRHALMGERLGMDIANMIYDVCEAIVENN------K 842
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 699 EQWDIEGLEAALYSDFAVRLPIQQwlDEDDKLYEETLRSKILEQIVAAYYEKEELA------------------------ 754
Cdd:PRK12901 843 VANDYKGFKFELIRTLAMESPITE--EEFNKLKKDELTDKLYDAALENYQRKMERIaeiafpvikqvyeeqgnmyerivv 920
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 755 ----------------------GAEALRAFEKQMLLRVLDDLWKDHLSTMDHLRHGIHLRGYAQKNPKQEYKRESFTLFQ 812
Cdd:PRK12901 921 pftdgkrtlnvvtnlkeayeteGKEIVKDFEKNITLHIIDEAWKEHLREMDELKQSVQNASYEQKDPLLIYKFESFELFK 1000
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 813 ELLDSIKRDTIRVLSHVQVRREDPAE-EEARLRREAEElakRMQFQHAEAPSMEQAvageeEELPEGPAPVVPLEPVRNE 891
Cdd:PRK12901 1001 NMVDKVNREVISFLFKGEIPVQEAPEiREAAPERRLDP---KYRTQKEEIQDSDQR-----AAASRDTGAQVKETPVRVE 1072
|
1130 1140
....*....|....*....|....*...
gi 15599599 892 QKIGRNEPCPC-----GSGKKYKHCHGQ 914
Cdd:PRK12901 1073 KKIGRNDPVPCqnvdgGSGKKYKFKHAE 1100
|
|
| secA |
CHL00122 |
preprotein translocase subunit SecA; Validated |
5-826 |
0e+00 |
|
preprotein translocase subunit SecA; Validated
Pssm-ID: 214371 [Multi-domain] Cd Length: 870 Bit Score: 946.73 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 5 LLKKLFGskNERDVKRMAKAVQAINALEPQMVALSDEQLKAKTAEFQQRYAKGETLDQLLPEAFAVVREAGKRVMGMRHF 84
Cdd:CHL00122 1 MFNNLFN--NKSKLNKYQTLVNQINLLEEELKNLTDTELRSKTNKLKKRLSNGQNLNKIIPESFALTREASFRTLGLRHF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 85 DVQLIGGMTLHDGKIAEMRTGEGKTLVGTLPVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGVVTPFQPPE 164
Cdd:CHL00122 79 DVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 165 DKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVVDEVDSILIDEARTPLIISGQAEDSSELYIKINKLIP 244
Cdd:CHL00122 159 ERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYIVADELAK 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 245 RLKRQVeevegkpteegHYSIDEKTRQVELNEQGHQFIEDLLSQngllgegESLYSAHNlSLLTHVYAALRAHTLFHRNV 324
Cdd:CHL00122 239 YLEKNV-----------HYEVDEKNKNVILTEQGILFIEKILKI-------EDLYSAND-PWIPYILNALKAKELFFKNV 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 325 EYIVQGDQILLIDEHTGRTMPGRRLSEGLHQAIEAKEGLPIQAESQTLASTTFQNYFRLYNKLAGMTGTADTEAFEFRQI 404
Cdd:CHL00122 300 HYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKI 379
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 405 YGLDVVVIPTHRPIARKDFNDLVYLTQEEKYAAIITDIKQCQALGRPILVGTASIESSEYVSKLLQEAGIEHKVLNAK-- 482
Cdd:CHL00122 380 YNLEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKpe 459
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 483 YHEKEAEIIAQAGAPGSVTIATNMAGRGTDILLGGNWE----------------------------------------VE 522
Cdd:CHL00122 460 NVRRESEIVAQAGRKGSITIATNMAGRGTDIILGGNPEfklkkelydlllsyksnekistisqnflnilnslkndlkfLS 539
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 523 VAALEN------------PTEEQIAQIKAEWQKR-----------HQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQG 579
Cdd:CHL00122 540 LSDFENlkilneaseisiPKNSYQLSLRFLYNELlekykklqekeKKIVKKLGGLYVIGTERHESRRIDNQLRGRAGRQG 619
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 580 DPGSSRFYLSLEDNLMRIFASDRVKNFMKALGMQSgEAIEHRMVTNAIEKAQRKVEGRNFDIRKQLLEFDDVANEQRKVI 659
Cdd:CHL00122 620 DPGSSRFFLSLEDNLLRIFGGDKIQNLMQTLNLDD-EPLESKLLSKSLDSAQKKVEEYYYDQRKQLFEYDQVLNKQRKAI 698
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 660 YHMRNTLLSAEDVGETIKEFREEtlsaTINQHIPPQSLPEQWDIEGLEAALYSDFAVRLPIQQWLDEDDKLYEETLRSKI 739
Cdd:CHL00122 699 YSERRKILESQSLRDWILAYGEQ----VIDDIITFLKSRKNPNNKFINLINKFKELLKLPLCFNKSDLNTLNSGELKKFL 774
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 740 LEQIVAAYYEKE---ELAGAEALRAFEKQMLLRVLDDLWKDHLSTMDHLRHGIHLRGYAQKNPKQEYKRESFTLFQELLD 816
Cdd:CHL00122 775 YQQFWISYDLKElylEQIGTGLMRELERSLLLQQIDKSWKEHLQKMSLLREAIGWRSYGQKDPLIEYKNEAFNLFINMIN 854
|
890
....*....|
gi 15599599 817 SIKRDTIRVL 826
Cdd:CHL00122 855 HIRHLVIYDL 864
|
|
| SecA2_Bac_anthr |
TIGR04397 |
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in ... |
6-827 |
0e+00 |
|
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in genomes with the preprotein translocase SecA (TIGR00963) and closely resemble it, hence the designation SecA2. However, this appears to mark a different type of accessory Sec system SecA2 (TIGR03714) from the serine-rich glycoprotein type found in Staphylococcus and Streptococcus, and the actinobacterial SecA2 (TIGR04221). This type occurs in species including Bacillus anthracis, Geobacillus thermoglucosidasius, Solibacillus silvestris, etc. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 275190 [Multi-domain] Cd Length: 774 Bit Score: 921.44 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 6 LKKLFGSKNERDVKRMAKAVQAINALEPQMVALSDEQLKAKTAEFQQRYAKGETLDQLLPEAFAVVREAGKRVMGMRHFD 85
Cdd:TIGR04397 1 VKKLKGDSSARELKRYEKLVAQINELEPKMEKLSDEELRQKTITFKERLEDGKTVDDIKVEAFAVVREASKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 86 VQLIGGMTLHDGKIAEMRTGEGKTLVGTLPVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGVVTPFQPPED 165
Cdd:TIGR04397 81 VQLIGGLVLLEGNIAEMPTGEGKTLVASLPSYLRALEGKGVHVITVNDYLARRDRELIGQIHEFLGLTVGLNVPMMEASE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 166 KRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVVDEVDSILIDEARTPLIISGQAEDSSELYIKINKLIPR 245
Cdd:TIGR04397 161 KKEAYQADITYGVGTEFGFDYLRDNMVYSLSDKVQRPYHFAIIDEIDSVLIDEAKTPLIIAGKTGSSSELHYICARIIKS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 246 LKrqveevegkptEEGHYSIDEKTRQVELNEQGHQFIEDLLSQngllgegESLYSAHNLSLLTHVYAALRAHTLFHRNVE 325
Cdd:TIGR04397 241 FE-----------ETEDYEYDPETKAASLTEEGITKIERAFGI-------DNLYDLEHQTLYHYLIQALRAHVLFKRDVD 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 326 YIVQGDQILLIDEHTGRTMPGRRLSEGLHQAIEAKEGLPIQAESQTLASTTFQNYFRLYNKLAGMTGTADTEAFEFRQIY 405
Cdd:TIGR04397 303 YIVKDGKIELVDMFTGRIMEGRSLSDGLHQAIEAKEGLEITEENKTQASITIQNYFRMYPKLSGMTGTAKTEEKEFRETY 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 406 GLDVVVIPTHRPIARKDFNDLVYLTQEEKYAAIITDIKQCQALGRPILVGTASIESSEYVSKLLQEAGIEHKVLNAKYHE 485
Cdd:TIGR04397 383 GMDVVQIPTNRPRIRVDWPDRVFMTYEAKYKAVAKEVKKRHETGQPILIGTTSILQSETVAKYLDKEKIPYQLLNAKTVE 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 486 KEAEIIAQAGAPGSVTIATNMAGRGTDILLGgnwevevaalenpteeqiaqikaewqkrhQQVIEAGGLHVIASERHESR 565
Cdd:TIGR04397 463 QEADLIALAGQKGQVTIATNMAGRGTDILLG-----------------------------EGVHELGGLHVIGTERHESR 513
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 566 RIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEGRNFDIRKQL 645
Cdd:TIGR04397 514 RIDNQLRGRSGRQGDPGSSQFIISLEDDMFRRYAAEELEKWKKKLKTDETGEILNKDVHEFVDKVQRIIEGSHYSAREYN 593
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 646 LEFDDVANEQRKVIYHMRNTLLSAEDVGETIKEFREETLSATINQHIPPQSLPEQWDIEGLEAALYSDFAVRlPIQQWLD 725
Cdd:TIGR04397 594 LKLDDVINEQRNVIYQLRDKLLEEEDAISEVLKMIRSAVEQIIDQYCPEEVLPEEWDLERLTEELNRIFPVT-FVTFDKR 672
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 726 EDDKlyeETLRSKI---LEQIVAAYyekEELAGAEALRAFEKQMLLRVLDDLWKDHLSTMDHLRHGIHLRGYAQKNPKQE 802
Cdd:TIGR04397 673 IADK---EELKDLVkdtYEQYIAAL---EKLPENEEIQMRLKHVMLSVIDAHWTRHLDAMNLLKEGIGLRSYQQEDPMRL 746
|
810 820
....*....|....*....|....*
gi 15599599 803 YKRESFTLFQELLDSIKRDTIRVLS 827
Cdd:TIGR04397 747 YQKEGLELFEAMYQNIEREICTELA 771
|
|
| secA |
PRK12903 |
preprotein translocase subunit SecA; Reviewed |
6-840 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237258 [Multi-domain] Cd Length: 925 Bit Score: 865.52 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 6 LKKLFGSKNeRDVKRMAKAVQAINALEPQMVALSDEQLKAKTAEFQQRYAKGETLDQLLPEAFAVVREAGKRVMGMRHFD 85
Cdd:PRK12903 3 FLKLFFFKS-TEMRIAEKILKQINDLEPYYRNLTDEELANKTNEFKDRLKNGETLEDIRVEAFAVAREATKRVLGKRPYD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 86 VQLIGGMTLHDGKIAEMRTGEGKTLVGTLPVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGVVTPFQPPED 165
Cdd:PRK12903 82 VQIIGGIILDLGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 166 KRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVVDEVDSILIDEARTPLIISGQAEDSSELYIKINKLIPR 245
Cdd:PRK12903 162 KREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRT 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 246 LKrqveevegkpteEGHYSIDEKTRQVELNEQGHQFIEDLLSQNgllgegeSLYSAHNLSLLTHVYAALRAHTLFHRNVE 325
Cdd:PRK12903 242 LK------------EDDYKIDEETKAISLTEKGIKKANKFFKLK-------NLYDIENSELVHRIQNALRAHKVMKEDVE 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 326 YIVQGDQILLIDEHTGRTMPGRRLSEGLHQAIEAKEGLPIQAESQTLASTTFQNYFRLYNKLAGMTGTADTEAFEFRQIY 405
Cdd:PRK12903 303 YIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIY 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 406 GLDVVVIPTHRPIARKDFNDLVYLTQEEKYAAIITDIKQCQALGRPILVGTASIESSEYVSKLLQEAGIEHKVLNAKYHE 485
Cdd:PRK12903 383 NMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNA 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 486 KEAEIIAQAGAPGSVTIATNMAGRGTDILLGgnwevevaalenpteeqiaqikaewqkrhQQVIEAGGLHVIASERHESR 565
Cdd:PRK12903 463 REAEIIAKAGQKGAITIATNMAGRGTDIKLS-----------------------------KEVLELGGLYVLGTDKAESR 513
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 566 RIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFAS-DRVKNFMKALGmqsGEAIEHRMVTNAIEKAQRKVEGRNFDIRKQ 644
Cdd:PRK12903 514 RIDNQLRGRSGRQGDVGESRFFISLDDQLFRRFSNfDKIKEAFKKLG---DDEIKSKFFSKALLNAQKKIEGFNFDTRKN 590
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 645 LLEFDDVANEQRKVIYHMRNTLLSAEDVGETIKEFREETLSATINQ--HIPPQSLpeqWDIEGLEAALYSDFAVRLPIQQ 722
Cdd:PRK12903 591 VLDYDDVIRQQRDLIYAQRDLILIADDLSHVIEKMISRAVEQILKNsfIILKNNT---INYKELVEFLNDNLLRITHFKF 667
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 723 WLDEDDKLYEETLRSKILEQIVAAYYEKEELA----GAEALRAFEKQMLLRVLDDLWKDHLSTMDHLRHGIHLRGYAQKN 798
Cdd:PRK12903 668 SEKDFENYHKEELAQYLIEALNEIYFKKRQVIldkiALNTFFESERYIILSALDKYWQNHIDTMDKLRSGVNLVQYSQKN 747
|
810 820 830 840
....*....|....*....|....*....|....*....|..
gi 15599599 799 PKQEYKRESFTLFQELLDSIKRDTIRVLSHVQVRREDPAEEE 840
Cdd:PRK12903 748 PYQVYTEEGTKKFNILLQEIAYDVIVSLFNNPNAEKILIITE 789
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
6-402 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 765.05 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 6 LKKLFGSKNERDVKRMAKAVQAINALEPQMVALSDEQLKAKTAEFQQRYAKGETLDQLLPEAFAVVREAGKRVMGMRHFD 85
Cdd:smart00957 1 LKKLFGSKNDRELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRHFD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 86 VQLIGGMTLHDGKIAEMRTGEGKTLVGTLPVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGVVTPFQPPED 165
Cdd:smart00957 81 VQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 166 KRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVVDEVDSILIDEARTPLIISGQAED-SSELYIKINKLIP 244
Cdd:smart00957 161 RRAAYAADITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDeSSDLYHRADKFVP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 245 RLKRQVeevegkpteegHYSIDEKTRQVELNEQGHQFIEDLLSQngllgegESLYSAHNLSLLTHVYAALRAHTLFHRNV 324
Cdd:smart00957 241 RLKEDE-----------DYTVDEKSRTVELTEEGIEKAEKLLGI-------DNLYDPENIELLHHVNQALRAHYLFKRDV 302
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15599599 325 EYIVQGDQILLIDEHTGRTMPGRRLSEGLHQAIEAKEGLPIQAESQTLASTTFQNYFRLYNKLAGMTGTADTEAFEFR 402
Cdd:smart00957 303 DYIVRDGEVVIVDEFTGRVMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEFR 380
|
|
| secA2 |
TIGR03714 |
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA ... |
13-819 |
0e+00 |
|
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 163426 [Multi-domain] Cd Length: 762 Bit Score: 718.74 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 13 KNERDVKRMAKAVQAINALEPQMVALSDEQLKAKTAEFQQRYAKGETLDQLLPEAFAVVREAGKRVMGMRHFDVQLIGGM 92
Cdd:TIGR03714 1 INNLRLKKLRKILNKINALKGKMATLSDEELQAKTAEFKNRLVEGESLDDILPEAYAVVREADKRVLGMFPYDVQVLGAI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 93 TLHDGKIAEMRTGEGKTLVGTLPVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGVVTPFQPPED-----KR 167
Cdd:TIGR03714 81 VLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEydaneKR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 168 AAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVVDEVDSILIDEARTPLIISGQAEDSSELYIKINKLIPRLK 247
Cdd:TIGR03714 161 KIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 248 RQVeevegkpteegHYSIDEKTRQVELNEQGHQFIEDLLSQNgllgegeSLYSAHNLSLLTHVYAALRAHTLFHRNVEYI 327
Cdd:TIGR03714 241 EDV-----------DYIFKKDKKEVWLTDKGIEKAEQYFKID-------NLYSEEYFELVRHINLALRAHYLFKRNKDYV 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 328 VQGDQILLIDEHTGRTMPGRRLSEGLHQAIEAKEGLPIQAESQTLASTTFQNYFRLYNKLAGMTGTADTEAFEFRQIYGL 407
Cdd:TIGR03714 303 VTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSL 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 408 DVVVIPTHRPIARKDFNDLVYLTQEEKYAAIITDIKQCQALGRPILVGTASIESSEYVSKLLQEAGIEHKVLNAKYHEKE 487
Cdd:TIGR03714 383 SVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKE 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 488 AEIIAQAGAPGSVTIATNMAGRGTDILLGgnwevevaalenpteeqiaqikaewqkrhQQVIEAGGLHVIASERHESRRI 567
Cdd:TIGR03714 463 AQIIAEAGQKGAVTVATSMAGRGTDIKLG-----------------------------KGVAELGGLAVIGTERMENSRV 513
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 568 DNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFASDRVKNFMKALGMQ----SGEAIEHRMVTNAIEKAQRKVEGRNFDIRK 643
Cdd:TIGR03714 514 DLQLRGRSGRQGDPGSSQFFVSLEDDLIKRWSPSWLKKYYKKYSVKdsklKPSALFKRRFRKIVEKAQRASEDKGESARE 593
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 644 QLLEFDDVANEQRKVIYHMRNTLLSAEDVGET-IKEFREETLSATI-NQHIPPQSLPEQWDIEGLEAALYSDFAvrlPIQ 721
Cdd:TIGR03714 594 QTNEFEESLSIQRENIYAERNRLIEGSDFLDDdVDQIIDDVFNMYAeEQDLSNKSLLKRFILENLSYQFKNDPD---EFD 670
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 722 QWLDEDDKLYEETLRSKILEQivaayyEKEELAGAEALRAFEKQMLLRVLDDLWKDHLSTMDHLRHGIHLRGYAQKNPKQ 801
Cdd:TIGR03714 671 LKNKEAIKDFLKEIADKELSE------KKKVLNNDYLFNDFERLSILKAIDENWIEQVDYLQQLKTVVTNRQNGQRNPIF 744
|
810
....*....|....*...
gi 15599599 802 EYKRESFTLFQELLDSIK 819
Cdd:TIGR03714 745 EYHKEALESYEYMKKEIK 762
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
6-402 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 698.86 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 6 LKKLFGSKNERDVKRMAKAVQAINALEPQMVALSDEQLKAKTAEFQQRYAKGETLDQLLPEAFAVVREAGKRVMGMRHFD 85
Cdd:pfam07517 1 LKKIFGSPNERDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 86 VQLIGGMTLHDGKIAEMRTGEGKTLVGTLPVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGVVTPFQPPED 165
Cdd:pfam07517 81 VQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 166 KRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVVDEVDSILIDEARTPLIISGQAEDSSELYIKINKLIPR 245
Cdd:pfam07517 161 RRAAYNADITYGTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSELYREADRLVKS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 246 LKrqveevegkptEEGHYSIDEKTRQVELNEQGHQFIEDLLSQngllgegESLYSAHNLSLLTHVYAALRAHTLFHRNVE 325
Cdd:pfam07517 241 LE-----------EDGDYEIDEKSKNVELTEKGIEKIEKLLGI-------DNLYDPENVELLHHINQALKAHHLFKRDVD 302
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15599599 326 YIVQGDQILLIDEHTGRTMPGRRLSEGLHQAIEAKEGLPIQAESQTLASTTFQNYFRLYNKLAGMTGTADTEAFEFR 402
Cdd:pfam07517 303 YIVRDGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEFR 379
|
|
| secA |
PRK12898 |
preprotein translocase subunit SecA; Reviewed |
1-649 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237253 [Multi-domain] Cd Length: 656 Bit Score: 675.19 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 1 MFAPLLKKLFGSKNERDVKRMAKAVQAINALEPQMVALSDEQLKAKTAEFQQRY-AKGETLDQLLPEAFAVVREAGKRVM 79
Cdd:PRK12898 21 WLERVLGRLAGRVRGRAARRQRLLADRVLAAAEALAGLSEEALRARSLALRARLrARDGFRDALLAEAFALVREASGRVL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 80 GMRHFDVQLIGGMTLHDGKIAEMRTGEGKTLVGTLPVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGVVTP 159
Cdd:PRK12898 101 GQRHFDVQLMGGLALLSGRLAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVE 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 160 FQPPEDKRAAYAADITYGTNNEFGFDYLRDNMAF-------------------SLDDKFQRELNFAVVDEVDSILIDEAR 220
Cdd:PRK12898 181 DQSPDERRAAYGADITYCTNKELVFDYLRDRLALgqrasdarlaleslhgrssRSTQLLLRGLHFAIVDEADSVLIDEAR 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 221 TPLIISGQAEDSSELyikinklipRLKRQVEEVEGKPTEEGHYSIDEKTRQVELNEQGHQFIEDLLSQNGLLGEGESLYS 300
Cdd:PRK12898 261 TPLIISAPAKEADEA---------EVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRRE 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 301 AHnlsllthVYAALRAHTLFHRNVEYIVQGDQILLIDEHTGRTMPGRRLSEGLHQAIEAKEGLPIQAESQTLASTTFQNY 380
Cdd:PRK12898 332 EL-------VRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRF 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 381 FRLYNKLAGMTGTADTEAFEFRQIYGLDVVVIPTHRPIARKDFNDLVYLTQEEKYAAIITDIKQCQALGRPILVGTASIE 460
Cdd:PRK12898 405 FRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVA 484
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 461 SSEYVSKLLQEAGIEHKVLNAKYHEKEAEIIAQAGAPGSVTIATNMAGRGTDILLGgnwevevaalenpteeqiaqikae 540
Cdd:PRK12898 485 ASERLSALLREAGLPHQVLNAKQDAEEAAIVARAGQRGRITVATNMAGRGTDIKLE------------------------ 540
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 541 wqkrhQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFASDRVKNF--MKALGMQSGEAI 618
Cdd:PRK12898 541 -----PGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLLQSFLGSRGLAIrrMELLGPRGGRAL 615
|
650 660 670
....*....|....*....|....*....|.
gi 15599599 619 EHRMVTnaieKAQRKVEGRNFDIRKQLLEFD 649
Cdd:PRK12898 616 GALLLR----RAQRRAERLHARARRALLHAD 642
|
|
| SecA2_Mycobac |
TIGR04221 |
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the ... |
8-845 |
0e+00 |
|
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the SecA2 subunit of the Mycobacterial type of accessory secretory system. This family is quite different SecA2 of the Staph/Strep type (TIGR03714).
Pssm-ID: 275062 [Multi-domain] Cd Length: 762 Bit Score: 571.00 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 8 KLFGSKNERDVKRMAKAVQAINALEPQMVALSDEQLKAKTAEFQQryaKGETLDqlLPEAFAVVREAGKRVMGMRHFDVQ 87
Cdd:TIGR04221 7 KALGSSTERNQKRSLAIVPAAASRMKELSALDDEELTKAARDLVL---SGEAAD--AAQFLAILREAAERTLGMRPFDVQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 88 LIGGMTLHDGKIAEMRTGEGKTLVGTLPVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGVVTPFQPPEDKR 167
Cdd:TIGR04221 82 LLGALRLLAGDVIEMATGEGKTLAGAMAATGFALLGKRVHVVTVNDYLARRDAEWMGPLVDFFGLTVGWVTEDSTPDERR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 168 AAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVVDEVDSILIDEARTPLIISGqAEDSSELYIKINKLIPRLK 247
Cdd:TIGR04221 162 AAYACDVTYASVNEIGFDVLRDQLVTDRADLVQPAADVALIDEADSVLVDEALVPLVLAG-NEPGEAPRGRITDLVRRLR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 248 rqveevegkptEEGHYSIDEKTRQVELNEQGHQFIEDLLSqngllgeGESLYS-AHNLSLLTHVYAALRAHTLFHRNVEY 326
Cdd:TIGR04221 241 -----------EDKHYTVDEDGRNVHLTEDGARAVEAELG-------IDDLYSeEHVGTTLVQVNVALHAHALLIRDVHY 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 327 IVQGDQILLIDEHTGRTMPGRRLSEGLHQAIEAKEGLPIQAESQTLASTTFQNYFRLYNKLAGMTGTADTEAFEFRQIYG 406
Cdd:TIGR04221 303 IVRDGKVALIDASRGRVAQLQRWPDGLQAAVEAKEGLEVTEGGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYD 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 407 LDVVVIPTHRPIARKDFNDLVYLTQEEKYAAIITDIKQCQALGRPILVGTASIESSEYVSKLLQEAGIEHKVLNAKYHEK 486
Cdd:TIGR04221 383 LGVSVIPPNTPNIRFDEADRVYATAAEKNDAIVEEIAEVHKTGQPVLVGTQDVAESEELAEALLEAGVPCNVLNAKNDAE 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 487 EAEIIAQAGAPGSVTIATNMAGRGTDILLGGNWEVEvaalenpteeqiaqikaewqkrHQQVIEAGGLHVIASERHESRR 566
Cdd:TIGR04221 463 EAAIIAEAGDIGAVTVSTQMAGRGTDIRLGGSDEAD----------------------HDRVAELGGLHVIGTGRHRTAR 520
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 567 IDNQLRGRAGRQGDPGSSRFYLSLEDNLM-RIFASDRVKnfmkalgMQSGE--AIEHRMVTNAIEKAQRKVEGRNFDIRK 643
Cdd:TIGR04221 521 LDNQLRGRAGRQGDPGSSVFFVSLEDDVVaVGGAGETVP-------AQPAEdgRIESPRVQDFVDHAQRVAEGQLLEIHA 593
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 644 QLLEFDDVANEQRKVIYHMRNTLLSAEdvgetikefreetlsatinqhippqslpeqwdiegleaalysdfavrlpiQQW 723
Cdd:TIGR04221 594 NTWRYNQLIAQQRDIIDERRETLLDTD--------------------------------------------------TAW 623
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 724 LDeddklyeetlrskILEQIVAAYYEKEELAGAEALRAFEKQMLLRVLDDLWKDHLSTMDHLRHGIHLRGYAQKNPKQEY 803
Cdd:TIGR04221 624 QE-------------LSERAADRAAELKKEVSEDALERAAREIMLYHLDRGWAEHLAYLDDVRESIHLRALGRETPLDEF 690
|
810 820 830 840
....*....|....*....|....*....|....*....|..
gi 15599599 804 KRESFTLFQELLDSIKRDTIRVLSHVQVRREDPAEEEARLRR 845
Cdd:TIGR04221 691 HRMAVRAFKELAQRAVDKAVETFEEVEIDADGAHLDEAGLAR 732
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
42-414 |
8.19e-141 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 417.71 E-value: 8.19e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 42 QLKAKTAEFQQRYAKGETLDQLLPEAFAVVREAGKRVMGMRHFDVQLIGGMTLHDGKIAEMRTGEGKTLVGTLPVYLNAL 121
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 122 SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGVVTPFQPPEDKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQR 201
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYGTNNELGFDYLRDNMVTSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 202 ELNFAVVDEVDSILIDEARTPLIISGqaedsselyikinkliprlkrqveevegkpteeghysidektrqvelneqghqf 281
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLIISG------------------------------------------------------ 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 282 iedllsqngllgegeslysahnlsllthvyaalrahtlfhrnveyivqgdqillidehtgrtmpgrrlseglhqaieake 361
Cdd:cd17928 --------------------------------------------------------------------------------
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 15599599 362 glpiqaesqTLASTTFQNYFRLYNKLAGMTGTADTEAFEFRQIYGLDVVVIPT 414
Cdd:cd17928 187 ---------TLATITFQNYFRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| SecA_SW |
pfam07516 |
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts ... |
617-830 |
3.81e-103 |
|
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This family is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.
Pssm-ID: 462189 [Multi-domain] Cd Length: 213 Bit Score: 319.05 E-value: 3.81e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 617 AIEHRMVTNAIEKAQRKVEGRNFDIRKQLLEFDDVANEQRKVIYHMRNTLLSAEDVGETIKEFREETLSATINQHIPPQS 696
Cdd:pfam07516 1 PIEHKMVSKAIENAQKKVEGRNFDIRKNLLEYDDVMNQQREVIYAQRREILEGEDLKEDILEMIEDVVDDIVDEYIPPEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 697 LPEQWDIEGLEAALYSDFAVRLPIQQWLDEDDKLYEEtLRSKILEQIVAAYYEKEELAGAEALRAFEKQMLLRVLDDLWK 776
Cdd:pfam07516 81 SPEEWDLEGLKEALNEIFGLELPISEWEEEEDLDKEE-LKERLLEAAEEAYEEKEEEIGPELMRELERVVLLQVIDSKWK 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 15599599 777 DHLSTMDHLRHGIHLRGYAQKNPKQEYKRESFTLFQELLDSIKRDTIRVLSHVQ 830
Cdd:pfam07516 160 EHLDAMDQLRQGIGLRAYGQKDPLVEYKREGFELFEEMLDAIREEVVRYLFRVQ 213
|
|
| SF2_C_secA |
cd18803 |
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the ... |
420-589 |
1.71e-82 |
|
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA is a DEAD-like helicase belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350190 [Multi-domain] Cd Length: 141 Bit Score: 261.72 E-value: 1.71e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 420 RKDFNDLVYLTQEEKYAAIITDIKQCQALGRPILVGTASIESSEYVSKLLQEAGIEHKVLNAKYHEKEAEIIAQAGAPGS 499
Cdd:cd18803 1 RKDLPDLVYKTEEEKWKAIVEEVKELHAKGQPVLVGTRSVEKSELLSALLKEEGIPHNVLNAKNHAREAEIIAEAGQKGA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 500 VTIATNMAGRGTDILLGGNWEvevaalenpteeqiaqikaewqkrhqqviEAGGLHVIASERHESRRIDNQLRGRAGRQG 579
Cdd:cd18803 81 VTIATNMAGRGTDIKLGGNVE-----------------------------ELGGLHVIGTERHESRRIDNQLRGRAGRQG 131
|
170
....*....|
gi 15599599 580 DPGSSRFYLS 589
Cdd:cd18803 132 DPGSSRFYLS 141
|
|
| SecA_PP_bind |
smart00958 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
228-358 |
3.44e-53 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 214938 [Multi-domain] Cd Length: 114 Bit Score: 180.73 E-value: 3.44e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 228 QAEDSSELYIKINKLIPRLKRQveevegkpteEGHYSIDEKTRQVELNEQGHQFIEDLLSQngllgegESLYSAHNLSLL 307
Cdd:smart00958 1 PAEDSSELYKRADELVPTLKKD----------EEDYEVDEKSRQVALTEEGIEKAEKLLGI-------DNLYDPENIELV 63
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 15599599 308 THVYAALRAHTLFHRNVEYIVQGDQILLIDEHTGRTMPGRRLSEGLHQAIE 358
Cdd:smart00958 64 HHVNQALRAHKLFKRDVDYIVRDGEVVIVDEFTGRVMPGRRWSDGLHQAIE 114
|
|
| SecA_PP_bind |
pfam01043 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
231-358 |
1.03e-48 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 460039 [Multi-domain] Cd Length: 110 Bit Score: 167.97 E-value: 1.03e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 231 DSSELYIKINKLIPRLKRQVeevegkpteegHYSIDEKTRQVELNEQGHQFIEDLLSqngllgeGESLYSAHNLSLLTHV 310
Cdd:pfam01043 1 KSTELYRQADKFVKQLKEDE-----------DYEVDEKAKTVELTEEGIEKAEKLLG-------IDNLYDPENIELVHHI 62
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 15599599 311 YAALRAHTLFHRNVEYIVQGDQILLIDEHTGRTMPGRRLSEGLHQAIE 358
Cdd:pfam01043 63 NQALKAHHLFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIE 110
|
|
| SF2-N |
cd00046 |
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily ... |
97-224 |
3.16e-17 |
|
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily 2 helicases comprise a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This N-terminal domain contains the ATP-binding region.
Pssm-ID: 350668 [Multi-domain] Cd Length: 146 Bit Score: 79.37 E-value: 3.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599599 97 GKIAEMRTGEGKTLVGTLPVYLNALS-GKGVHVVTVNDYLARRDANWMRPLYeFLGLSVGVVTPFQPPEDKRAAYA--AD 173
Cdd:cd00046 3 NVLITAPTGSGKTLAALLAALLLLLKkGKKVLVLVPTKALALQTAERLRELF-GPGIRVAVLVGGSSAEEREKNKLgdAD 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 15599599 174 ITYGTNNEFGFDYLRDnmafslDDKFQRELNFAVVDEVDSILIDEARTPLI 224
Cdd:cd00046 82 IIIATPDMLLNLLLRE------DRLFLKDLKLIIVDEAHALLIDSRGALIL 126
|
|
| YecA |
COG3318 |
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ... |
887-914 |
2.43e-13 |
|
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];
Pssm-ID: 442547 [Multi-domain] Cd Length: 45 Bit Score: 64.92 E-value: 2.43e-13
10 20
....*....|....*....|....*...
gi 15599599 887 PVRNEQKIGRNEPCPCGSGKKYKHCHGQ 914
Cdd:COG3318 17 PRRAEPKVGRNDPCPCGSGKKYKKCCGA 44
|
|
| PRK05590 |
PRK05590 |
hypothetical protein; Provisional |
888-913 |
7.15e-13 |
|
hypothetical protein; Provisional
Pssm-ID: 235521 Cd Length: 166 Bit Score: 67.30 E-value: 7.15e-13
10 20
....*....|....*....|....*.
gi 15599599 888 VRNEQKIGRNEPCPCGSGKKYKHCHG 913
Cdd:PRK05590 139 VVNENKVGRNDPCPCGSGKKYKKCCG 164
|
|
| SEC-C |
pfam02810 |
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ... |
896-913 |
1.23e-10 |
|
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.
Pssm-ID: 460704 [Multi-domain] Cd Length: 19 Bit Score: 56.72 E-value: 1.23e-10
|
| DEAD-like_helicase_N |
cd17912 |
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase ... |
97-139 |
5.21e-09 |
|
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase superfamily is a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. The N-terminal domain contains the ATP-binding region.
Pssm-ID: 350670 [Multi-domain] Cd Length: 81 Bit Score: 53.68 E-value: 5.21e-09
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 15599599 97 GKIAEMRTGEGKTLVGTLPVYLNALSGKGVHVVTVNDYLARRD 139
Cdd:cd17912 1 NILHLGPTGSGKTLVAIQKIASAMSSGKSVLVVTPTKLLAHEI 43
|
|
| PRK01617 |
PRK01617 |
hypothetical protein; Provisional |
893-914 |
8.74e-09 |
|
hypothetical protein; Provisional
Pssm-ID: 234966 Cd Length: 154 Bit Score: 55.42 E-value: 8.74e-09
10 20
....*....|....*....|..
gi 15599599 893 KIGRNEPCPCGSGKKYKHCHGQ 914
Cdd:PRK01617 133 QFGRNDPCPCGSGKKFKKCCGQ 154
|
|
| PRK10396 |
PRK10396 |
hypothetical protein; Provisional |
882-911 |
1.45e-08 |
|
hypothetical protein; Provisional
Pssm-ID: 236680 [Multi-domain] Cd Length: 221 Bit Score: 56.29 E-value: 1.45e-08
10 20 30
....*....|....*....|....*....|
gi 15599599 882 VVPLEPVRNEQKIGRNEPCPCGSGKKYKHC 911
Cdd:PRK10396 189 KAVQQPIKAEEKVGRNDPCPCGSGKKFKQC 218
|
|
| SWIM_PBPRA1643 |
TIGR04102 |
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ... |
887-913 |
1.14e-07 |
|
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.
Pssm-ID: 200353 [Multi-domain] Cd Length: 108 Bit Score: 50.77 E-value: 1.14e-07
10 20
....*....|....*....|....*..
gi 15599599 887 PVRNEQKIGRNEPCPCGSGKKYKHCHG 913
Cdd:TIGR04102 82 TTTFEKTPNRNDPCPCGSGKKYKKCCG 108
|
|
| DEAD-like_helicase_C |
cd09300 |
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases ... |
552-587 |
1.66e-07 |
|
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases is composed of two superfamilies, SF1 and SF2, that share almost identical folds and extensive structural similarity in their catalytic core. Helicases are involved in ATP-dependent RNA or DNA unwinding. Two distinct types of helicases exist, those forming toroidal, predominantly hexameric structures, and those that do not. SF1 and SF2 helicases do not form toroidal structures, while SF3-6 helicases do. Their conserved helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350171 [Multi-domain] Cd Length: 59 Bit Score: 48.70 E-value: 1.66e-07
10 20 30
....*....|....*....|....*....|....*.
gi 15599599 552 GGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFY 587
Cdd:cd09300 23 ELNTIIVDKNLRSYRGLNQAFGRANRIYTFGGIVTY 58
|
|
| PRK02250 |
PRK02250 |
hypothetical protein; Provisional |
885-913 |
4.75e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 179393 [Multi-domain] Cd Length: 166 Bit Score: 47.56 E-value: 4.75e-06
10 20
....*....|....*....|....*....
gi 15599599 885 LEPVRNEQKIGRNEPCPCGSGKKYKHCHG 913
Cdd:PRK02250 138 LNQSVSSLKQGRNDPCICGSGKKFKKCCG 166
|
|
| PRK12318 |
PRK12318 |
methionyl aminopeptidase; |
894-912 |
9.84e-05 |
|
methionyl aminopeptidase;
Pssm-ID: 183434 [Multi-domain] Cd Length: 291 Bit Score: 45.20 E-value: 9.84e-05
|
| PRK00183 |
PRK00183 |
hypothetical protein; Provisional |
893-911 |
1.09e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 166842 Cd Length: 157 Bit Score: 43.64 E-value: 1.09e-04
|
| YchJ |
COG3012 |
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ... |
895-911 |
3.81e-03 |
|
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];
Pssm-ID: 442249 Cd Length: 144 Bit Score: 38.67 E-value: 3.81e-03
|
| |
