|
Name |
Accession |
Description |
Interval |
E-value |
| TrmJ |
COG0565 |
tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase [Translation, ... |
2-248 |
1.33e-128 |
|
tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase [Translation, ribosomal structure and biogenesis]; tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440331 [Multi-domain] Cd Length: 237 Bit Score: 363.67 E-value: 1.33e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 2 LDRIRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPESFPHGDAVARASGATDILDAARVVDTLEEALIGCSVVLGTSA 81
Cdd:COG0565 1 LDNIRVVLVEPQHPGNIGAAARAMKNFGLSDLRLVNPRGWPDEEARAMASGADDVLENARVVDTLEEALADCDLVVGTTA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 82 RDRRIPWPLLDPRECATTCLEHlEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAW 161
Cdd:COG0565 81 RPRELRKPVLTPREAAEELLAR-AAGGKVALVFGRERSGLTNEELALCDALVTIPTNPEYPSLNLAQAVQVVAYELRKAA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 162 LAAQGKPTKMEkfestsmlnTELVTADELELYYAHLERTLIDIGFLDPEKPRHLMSRLRRLYGRSAISKLEMNILRGILT 241
Cdd:COG0565 160 LEAPPLPPPPE---------PEPATAEELEGLYEHLEELLDAIGFLDPEKPEKLMRRLRRLFGRARLTEREVRTLRGILR 230
|
....*..
gi 15599012 242 ETQKVAR 248
Cdd:COG0565 231 ALERRLK 237
|
|
| PRK15114 |
PRK15114 |
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional |
1-245 |
3.45e-102 |
|
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional
Pssm-ID: 185069 Cd Length: 245 Bit Score: 297.05 E-value: 3.45e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 1 MLDRIRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPESFPHGDAVARASGATDILDAARVVDTLEEALIGCSVVLGTS 80
Cdd:PRK15114 1 MLQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNATIVDTLDEALAGCSLVVGTS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 81 ARDRRIPWPLLDPRECATTCLEHLEaNGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMA 160
Cdd:PRK15114 81 ARSRTLPWPMLDPRECGLKSVAEAA-NAPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 161 WLAAQGKPTKMEKFEStsmlnTELVTADELELYYAHLERTLIDIGFLDPEKPRHLMSRLRRLYGRSAISKLEMNILRGIL 240
Cdd:PRK15114 160 WLATQENGEPQVEHEE-----TPYPLVDDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTRARPESQELNILRGIL 234
|
....*
gi 15599012 241 TETQK 245
Cdd:PRK15114 235 ASIEQ 239
|
|
| rRNA_methyl_1 |
TIGR00050 |
RNA methyltransferase, TrmH family, group 1; This is part of the trmH (spoU) family of ... |
2-245 |
3.01e-86 |
|
RNA methyltransferase, TrmH family, group 1; This is part of the trmH (spoU) family of S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases, and is now characterized, in E. coli, as a tRNA:Cm32/Um32 methyltransferase. It may be named TrMet(Xm32), or TrmJ, according to the nomenclature style chosen [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 272876 [Multi-domain] Cd Length: 233 Bit Score: 256.17 E-value: 3.01e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 2 LDRIRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPESFPHGDAVARASGATDILDAARVVDTLEEALIGCSVVLGTSA 81
Cdd:TIGR00050 1 LENIRIVLVEPSHPGNIGSIARAMKNMGLTELRLVNPRVKLEEEAYALAAGARDILDNAKVVDTLDEALDDCDFVVGTSA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 82 RDRRIPWPLLDPRECAttcLEHLEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAW 161
Cdd:TIGR00050 81 RSRNLQRPMLTPRELA---PKLVAEKGKVALVFGREDSGLTNEELQKCHVLVSIPTSEEYPSLNLSHAVAVILYELRMAW 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 162 LAAQgkptkmekfesTSMLNTELVTADELELYYAHLERTLIDIGFLDPEKPRHLMSRLRRLYGRSAISKLEMNILRGILT 241
Cdd:TIGR00050 158 LAQQ-----------ENLSEMPYATVDDLELLLEHLEETLLSLGFIPEHKPRQVMRKFRRLYGRAGLEKRELHILRGILR 226
|
....
gi 15599012 242 ETQK 245
Cdd:TIGR00050 227 SIEK 230
|
|
| SpoU-like_TrmJ |
cd18093 |
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl ... |
5-156 |
2.55e-73 |
|
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 32 in both tRNASer1 and tRNAGln2. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349966 Cd Length: 153 Bit Score: 220.44 E-value: 2.55e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 5 IRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPESFPHGD-AVARASGATDILDAARVVDTLEEALIGCSVVLGTSARD 83
Cdd:cd18093 1 IRVVLVEPQHPGNIGAVARAMKNFGLSDLRLVNPRCDDPEEaARALASGAEDVLENAKVYDTLEEALADCDLVVATTARP 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15599012 84 RRIPWPLLDPRECATTCLEHlEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYE 156
Cdd:cd18093 81 RGLRRPLLTPRELAELLKEH-AAGGKVALVFGREDSGLTNEELALCDLLVTIPTNPEYPSLNLAQAVAIVLYE 152
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
5-155 |
2.88e-33 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 117.63 E-value: 2.88e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 5 IRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPESF-PHGDAVARAS-GATDILDAaRVVDTLEEAL-----IGCSVVl 77
Cdd:pfam00588 2 LVVVLDNIQDPGNLGAIIRTAAAFGADGLILVEPRSAdPYNPKAIRASaGALFHLPL-VVVDNLEEALkdlkeAGYAVV- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 78 GTSARDRR---IPWPlldprecattclehleanGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNLAAAVQVLT 154
Cdd:pfam00588 80 ATSLGGKSlyeIDFP------------------KKVALVFGNEGTGLSNEVLELCDRLVRIPMSGDVESLNVAVAAAIAL 141
|
.
gi 15599012 155 Y 155
Cdd:pfam00588 142 Y 142
|
|
| tRNAmeth_TrmJ_Sulfolob |
NF041077 |
tRNA (cytidine-2'-O-)-methyltransferase TrmJ; |
5-225 |
4.49e-29 |
|
tRNA (cytidine-2'-O-)-methyltransferase TrmJ;
Pssm-ID: 469004 Cd Length: 229 Bit Score: 109.73 E-value: 4.49e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 5 IRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPesfpHGD---AVARASGATDILDAARVVDTLEEALIGCSVVLGTSA 81
Cdd:NF041077 2 IRVVLVEPEGEYNVGFIARLCKNFEVDELYIVNP----KCDlneALKFSAKGSEILEKAKIVNNFDDAIKDLDLKIATSS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 82 ---------RDRRIPWPLLDprecattclehLEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNLAAAVQV 152
Cdd:NF041077 78 iadnkgdmlRKSIKPWEISD-----------LIGGKKVALIFGRESVGLTREEISKADFLLHIPANPEYPVLNLSHAVGI 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 153 LTYEVrmaWLAAQGKPTKME-KFESTSMLN------TELV--TADELELYYAhLERTLIDiGFLDPEKPRHLMSRLRRLY 223
Cdd:NF041077 147 VLYEI---WKSRGNKSTKYNvSSESLKLIDkyvktlYDLIkrSEGDESMYIA-LKRALIK-GIRDEEEARAVVRFLRKLY 221
|
..
gi 15599012 224 GR 225
Cdd:NF041077 222 MR 223
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TrmJ |
COG0565 |
tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase [Translation, ... |
2-248 |
1.33e-128 |
|
tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase [Translation, ribosomal structure and biogenesis]; tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440331 [Multi-domain] Cd Length: 237 Bit Score: 363.67 E-value: 1.33e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 2 LDRIRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPESFPHGDAVARASGATDILDAARVVDTLEEALIGCSVVLGTSA 81
Cdd:COG0565 1 LDNIRVVLVEPQHPGNIGAAARAMKNFGLSDLRLVNPRGWPDEEARAMASGADDVLENARVVDTLEEALADCDLVVGTTA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 82 RDRRIPWPLLDPRECATTCLEHlEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAW 161
Cdd:COG0565 81 RPRELRKPVLTPREAAEELLAR-AAGGKVALVFGRERSGLTNEELALCDALVTIPTNPEYPSLNLAQAVQVVAYELRKAA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 162 LAAQGKPTKMEkfestsmlnTELVTADELELYYAHLERTLIDIGFLDPEKPRHLMSRLRRLYGRSAISKLEMNILRGILT 241
Cdd:COG0565 160 LEAPPLPPPPE---------PEPATAEELEGLYEHLEELLDAIGFLDPEKPEKLMRRLRRLFGRARLTEREVRTLRGILR 230
|
....*..
gi 15599012 242 ETQKVAR 248
Cdd:COG0565 231 ALERRLK 237
|
|
| PRK15114 |
PRK15114 |
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional |
1-245 |
3.45e-102 |
|
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional
Pssm-ID: 185069 Cd Length: 245 Bit Score: 297.05 E-value: 3.45e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 1 MLDRIRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPESFPHGDAVARASGATDILDAARVVDTLEEALIGCSVVLGTS 80
Cdd:PRK15114 1 MLQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNATIVDTLDEALAGCSLVVGTS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 81 ARDRRIPWPLLDPRECATTCLEHLEaNGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMA 160
Cdd:PRK15114 81 ARSRTLPWPMLDPRECGLKSVAEAA-NAPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 161 WLAAQGKPTKMEKFEStsmlnTELVTADELELYYAHLERTLIDIGFLDPEKPRHLMSRLRRLYGRSAISKLEMNILRGIL 240
Cdd:PRK15114 160 WLATQENGEPQVEHEE-----TPYPLVDDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTRARPESQELNILRGIL 234
|
....*
gi 15599012 241 TETQK 245
Cdd:PRK15114 235 ASIEQ 239
|
|
| rRNA_methyl_1 |
TIGR00050 |
RNA methyltransferase, TrmH family, group 1; This is part of the trmH (spoU) family of ... |
2-245 |
3.01e-86 |
|
RNA methyltransferase, TrmH family, group 1; This is part of the trmH (spoU) family of S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases, and is now characterized, in E. coli, as a tRNA:Cm32/Um32 methyltransferase. It may be named TrMet(Xm32), or TrmJ, according to the nomenclature style chosen [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 272876 [Multi-domain] Cd Length: 233 Bit Score: 256.17 E-value: 3.01e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 2 LDRIRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPESFPHGDAVARASGATDILDAARVVDTLEEALIGCSVVLGTSA 81
Cdd:TIGR00050 1 LENIRIVLVEPSHPGNIGSIARAMKNMGLTELRLVNPRVKLEEEAYALAAGARDILDNAKVVDTLDEALDDCDFVVGTSA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 82 RDRRIPWPLLDPRECAttcLEHLEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAW 161
Cdd:TIGR00050 81 RSRNLQRPMLTPRELA---PKLVAEKGKVALVFGREDSGLTNEELQKCHVLVSIPTSEEYPSLNLSHAVAVILYELRMAW 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 162 LAAQgkptkmekfesTSMLNTELVTADELELYYAHLERTLIDIGFLDPEKPRHLMSRLRRLYGRSAISKLEMNILRGILT 241
Cdd:TIGR00050 158 LAQQ-----------ENLSEMPYATVDDLELLLEHLEETLLSLGFIPEHKPRQVMRKFRRLYGRAGLEKRELHILRGILR 226
|
....
gi 15599012 242 ETQK 245
Cdd:TIGR00050 227 SIEK 230
|
|
| SpoU-like_TrmJ |
cd18093 |
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl ... |
5-156 |
2.55e-73 |
|
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 32 in both tRNASer1 and tRNAGln2. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349966 Cd Length: 153 Bit Score: 220.44 E-value: 2.55e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 5 IRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPESFPHGD-AVARASGATDILDAARVVDTLEEALIGCSVVLGTSARD 83
Cdd:cd18093 1 IRVVLVEPQHPGNIGAVARAMKNFGLSDLRLVNPRCDDPEEaARALASGAEDVLENAKVYDTLEEALADCDLVVATTARP 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15599012 84 RRIPWPLLDPRECATTCLEHlEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYE 156
Cdd:cd18093 81 RGLRRPLLTPRELAELLKEH-AAGGKVALVFGREDSGLTNEELALCDLLVTIPTNPEYPSLNLAQAVAIVLYE 152
|
|
| PRK10433 |
PRK10433 |
putative RNA methyltransferase; Provisional |
4-158 |
3.64e-39 |
|
putative RNA methyltransferase; Provisional
Pssm-ID: 236693 Cd Length: 228 Bit Score: 135.88 E-value: 3.64e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 4 RIRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPEsfPHGDAVAR--ASGATDILDAARVVDTLEEALIGCSVVLGTSA 81
Cdd:PRK10433 2 RLTIILVAPARAENVGAAARAMKTMGFSELRIVDSQ--AHLEPAARwvAHGSGDILDNAKVFDTLAEALHDVDFTVATTA 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15599012 82 RDRRIPWPLLDPRECATTCLEHLEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVR 158
Cdd:PRK10433 80 RSRAKFHYYATPAELVPLLEEKSSWMSHAALVFGREDSGLTNEELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
5-155 |
2.88e-33 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 117.63 E-value: 2.88e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 5 IRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPESF-PHGDAVARAS-GATDILDAaRVVDTLEEAL-----IGCSVVl 77
Cdd:pfam00588 2 LVVVLDNIQDPGNLGAIIRTAAAFGADGLILVEPRSAdPYNPKAIRASaGALFHLPL-VVVDNLEEALkdlkeAGYAVV- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 78 GTSARDRR---IPWPlldprecattclehleanGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNLAAAVQVLT 154
Cdd:pfam00588 80 ATSLGGKSlyeIDFP------------------KKVALVFGNEGTGLSNEVLELCDRLVRIPMSGDVESLNVAVAAAIAL 141
|
.
gi 15599012 155 Y 155
Cdd:pfam00588 142 Y 142
|
|
| tRNAmeth_TrmJ_Sulfolob |
NF041077 |
tRNA (cytidine-2'-O-)-methyltransferase TrmJ; |
5-225 |
4.49e-29 |
|
tRNA (cytidine-2'-O-)-methyltransferase TrmJ;
Pssm-ID: 469004 Cd Length: 229 Bit Score: 109.73 E-value: 4.49e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 5 IRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPesfpHGD---AVARASGATDILDAARVVDTLEEALIGCSVVLGTSA 81
Cdd:NF041077 2 IRVVLVEPEGEYNVGFIARLCKNFEVDELYIVNP----KCDlneALKFSAKGSEILEKAKIVNNFDDAIKDLDLKIATSS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 82 ---------RDRRIPWPLLDprecattclehLEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNLAAAVQV 152
Cdd:NF041077 78 iadnkgdmlRKSIKPWEISD-----------LIGGKKVALIFGRESVGLTREEISKADFLLHIPANPEYPVLNLSHAVGI 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 153 LTYEVrmaWLAAQGKPTKME-KFESTSMLN------TELV--TADELELYYAhLERTLIDiGFLDPEKPRHLMSRLRRLY 223
Cdd:NF041077 147 VLYEI---WKSRGNKSTKYNvSSESLKLIDkyvktlYDLIkrSEGDESMYIA-LKRALIK-GIRDEEEARAVVRFLRKLY 221
|
..
gi 15599012 224 GR 225
Cdd:NF041077 222 MR 223
|
|
| SpoU-like_family |
cd18082 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
6-156 |
1.91e-24 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349955 Cd Length: 145 Bit Score: 94.99 E-value: 1.91e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 6 RVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPESFPHGDAVARASGATDILDAARVVDTLEEALI-----GCSVVlGTS 80
Cdd:cd18082 1 HLVLDNIRSPGNIGSIFRTADAFGVEKIYLVGPTADIFDPKAKRTSRGTHFSVPYERVDNFEEYLKslkeeGYPLI-GLE 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15599012 81 ARDRRIPwplldPRECattcleHLEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYE 156
Cdd:cd18082 80 LTDGSIP-----LSEF------KFKKPKKIALIFGNERSGLSPELLALCDYTVHIPMSGKNSSLNVSVATGIALYE 144
|
|
| SpoU-like_rRNA-MTase |
cd18095 |
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
7-156 |
6.55e-13 |
|
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349968 Cd Length: 143 Bit Score: 64.37 E-value: 6.55e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 7 VVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPESFPHGDAVARAS-GA---TDILDAARVVDTLEEALIGCSVVLGTSAR 82
Cdd:cd18095 3 LVLDGVQDPGNLGTIIRTAAAFGVDGVILSKGTVDPYNPKVVRASmGAlfrLPIIRVDDLEELLEELKEAGYKVVAADLD 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15599012 83 drripwplldprecATTCLEHLEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYE 156
Cdd:cd18095 83 --------------GGSSLYDLDLPKPVALVLGNEGNGLSDELLELCDKRVTIPMSGGVESLNVAVAAAILLYE 142
|
|
| SpoU |
COG0566 |
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ... |
1-158 |
2.62e-12 |
|
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440332 [Multi-domain] Cd Length: 265 Bit Score: 64.83 E-value: 2.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 1 MLDRIRvvlvntsHPGNIGGAARAMKNMGLSQLVLVQPESFPHGDAVARAS-GATDILDAARVVDtLEEAL-----IGCS 74
Cdd:COG0566 119 VLDGVQ-------DPGNLGAILRSAAAFGVDGVILPKRRADPYNPKVVRASaGALFHVPVARVTN-LADALeelkeAGFW 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 75 VVlGTSARdrripwplldprecATTCLEHLEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNLAAAVQVLT 154
Cdd:COG0566 191 VV-GTDLD--------------GEASLYEVDLPGPVALVLGNEGKGLSRLVLEACDELVRIPMAGGVESLNVAVAAAILL 255
|
....
gi 15599012 155 YEVR 158
Cdd:COG0566 256 YEAA 259
|
|
| SpoU-like_RlmB |
cd18103 |
SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the ... |
1-157 |
1.57e-09 |
|
SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the methylation of guanosine 2251, a modification conserved in the peptidyltransferase domain of 23S rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349976 Cd Length: 143 Bit Score: 55.08 E-value: 1.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 1 MLDRIrvvlvntSHPGNIGGAARAMKNMGLSQLVLVQPESFPHGDAVARAS-GATDILDAARVVDtLEEAL-----IGCS 74
Cdd:cd18103 4 ILDGI-------TDPHNLGAIIRSAEAFGVDGVIIPKRRSAPLTPTVAKASaGALEHLPIARVTN-LARALeelkeAGFW 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 75 VVlGTSARdrripwplldprecATTCLEHLEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNLAAAVQVLT 154
Cdd:cd18103 76 IY-GADGE--------------AEKSLYDVDLTGPLALVLGSEGKGLRRLVLKNCDFLVKIPMAGKVDSLNVSVAAGIIL 140
|
...
gi 15599012 155 YEV 157
Cdd:cd18103 141 YEI 143
|
|
| SpoU-like |
cd18098 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
9-155 |
2.07e-09 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349971 Cd Length: 138 Bit Score: 54.58 E-value: 2.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 9 LVNTSHPGNIGGAARAMKNMGLSQLVLVqpesfphGDAVARASGATDILDAARVV-----DTLEEAL----IGCSVV--- 76
Cdd:cd18098 5 IENPKTPKNVGTLWRAAGCLGASFVFTI-------GARYKRRKQSTDTSKAWRHIplfhyDDLEDLAeplpFGAVLVave 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15599012 77 LGTSArdrripwplldprecatTCLEHLEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDpefGSLNLAAAVQVLTY 155
Cdd:cd18098 78 LTEGA-----------------TPLPDFKHPDRAVYLLGPEDGGLPQEVLARCHHVVYLPTR---GSLNVAVAGSIVLY 136
|
|
| TrmL |
COG0219 |
tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ... |
5-161 |
2.94e-08 |
|
tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ribosomal structure and biogenesis]; tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 439989 Cd Length: 153 Bit Score: 51.57 E-value: 2.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 5 IRVVLVNTSHPGNIGGAARAMKNMGlSQLVLVQPESFPHGD-AVARAsgATDILDAARVV--DTLEEALigcsvvlgTSA 81
Cdd:COG0219 2 LHIVLYEPEIPQNTGNIIRLCAATG-ARLHLIEPLGFSLDDkKLKRA--GLDYWELVDLTvhDSWEAFL--------EAL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 82 RDRRIpWpLLDPRecATTCLEHLEANGEVALVFGREYAGLTNEELQR-CQFHVHIPSDPEFGSLNLAAAVQVLTYEvrmA 160
Cdd:COG0219 71 PGGRL-F-LFTTK--GTKPYTDVDYQPGDVLLFGRETAGLPEEVLAApADQRLRIPMRPGVRSLNLSNAVAIVLYE---A 143
|
.
gi 15599012 161 W 161
Cdd:COG0219 144 L 144
|
|
| SpoU-like_TrmL |
cd18094 |
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL ... |
6-157 |
3.03e-08 |
|
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349967 Cd Length: 145 Bit Score: 51.30 E-value: 3.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 6 RVVLVNTSHPGNIGGAARAMKNMGlSQLVLVQPESFPHGD-AVARAsgATDILDAARVV--DTLEEALigcsvvlgTSAR 82
Cdd:cd18094 1 NIVLYEPEIPQNTGNIARTCAATG-ARLHLIEPLGFSLDDkRLKRA--GLDYWDHVDLTvhDSWEAFL--------EALP 69
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15599012 83 DRRIpWpLLDPRecATTCLEHLEANGEVALVFGREYAGLTNEELQRC-QFHVHIPSDPEFGSLNLAAAVQVLTYEV 157
Cdd:cd18094 70 PGRL-F-LFTTK--GTKPYTDFDFKPGDYLVFGRESTGLPEEILDAFpDRRLRIPMRPKVRSLNLSNSVAIVLYEA 141
|
|
| SpoU-like_TrmH |
cd18092 |
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group ... |
3-159 |
4.24e-08 |
|
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the ribose of the universally conserved guanosine 18 (G18) position in tRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349965 Cd Length: 162 Bit Score: 51.31 E-value: 4.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 3 DRIRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQP-ESFPHGDAVARasGATDILDAaRVVDTLEEAL-----IGCSVV 76
Cdd:cd18092 15 RDLTVVLENVHDPHNASAVLRTCDAFGVQDVHVIEPkNKFKKNRGVAM--GADKWLDV-HRHDSTEECLaalkeQGYRIV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 77 lGTSARDRRIPwplldprecattcLEHLEANGEVALVFGREYAGLTNEELQRCQFHVHIPSdpeFG---SLNLAAAVQVL 153
Cdd:cd18092 92 -ATSLSPDAVP-------------LDELDYTRPTALVFGNEKDGVSEEALAAADERVYIPM---YGfveSLNVSVAAAII 154
|
....*.
gi 15599012 154 TYEVRM 159
Cdd:cd18092 155 LYELQR 160
|
|
| SpoU-like |
cd18097 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
7-157 |
1.00e-07 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349970 Cd Length: 144 Bit Score: 49.87 E-value: 1.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 7 VVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPESFPHGDAVARAS-GATDILDAARVVDTLEealigcsVVLGTSARDRR 85
Cdd:cd18097 3 VVLDNLRSAHNVGSIFRTADAAGVEKIYLCGYTPTPPHPKVAKTAlGAEESVPWEHFEDTLE-------AVRALKARGYT 75
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15599012 86 IpWPLldprECATTC--LEHLEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEV 157
Cdd:cd18097 76 I-IAL----ETTENSvpLHEARLPRPLALVLGNEVRGVSPEVLALCDAVVEIPMFGRKNSLNVAVAAAVALYEL 144
|
|
| SpoU-like_RNA-MTase |
cd18104 |
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
7-159 |
4.53e-07 |
|
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349977 Cd Length: 146 Bit Score: 47.96 E-value: 4.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 7 VVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPESFPHGDAVARAS-GA-----TDILDAARVVDTLEEaligcsvvlgts 80
Cdd:cd18104 3 LVLEGLEKPGNLGAILRSADAAGADAVILCDPKTDLFNPNVIRASlGAvftlpVAEASSEETLAWLKE------------ 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15599012 81 ardRRIPWPLLDPRecATTCLEHLEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRM 159
Cdd:cd18104 71 ---NKIRILATTPK--AEKLYYEADLRGPIAIVVGSESEGLSEFWLKAADERVRIPMAGQADSLNVSVAAAILLYEALR 144
|
|
| SpoU-like_RNMTL1 |
cd18106 |
SAM-dependent rRNA methylase related to RNMTL1; RNMTL1 (also known as HC90, MRM3 and RMTL1) ... |
107-156 |
2.65e-04 |
|
SAM-dependent rRNA methylase related to RNMTL1; RNMTL1 (also known as HC90, MRM3 and RMTL1) catalyzes the methylation of 2'-O-ribose residues G1370 to GmG residue of the mitochondrial 16S rRNA. RNMTL1 is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349979 Cd Length: 148 Bit Score: 40.31 E-value: 2.65e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 15599012 107 NGEVALVFGREYAGLTNEELQRCQ----FHVHIPSDPEFGSLNLAAAVQVLTYE 156
Cdd:cd18106 94 SGPIVLVIGGETHGVSPEAYKLAHstggSRVHIPLANGVDSLNSAVAASILLFE 147
|
|
| SpoU-like_MRM1 |
cd18105 |
SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose ... |
15-156 |
2.89e-04 |
|
SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose residues G1145 to GmG residue of the mitochondrial 16S rRNA. MRM1 is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349978 Cd Length: 158 Bit Score: 40.19 E-value: 2.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 15 PGNIGGAARAMKNMGLSQLVLVQPESFPHGDAVARAS-GATDILDAARVVDT---LEEA------LIGCSVVLGTSARDR 84
Cdd:cd18105 11 PQNLGAILRSAYFLGVDGVVVSSKNSAPLSPVVSKASaGALELMPIYSVDNLasfLKSSkengwkVVGTSAPPSASSDKK 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15599012 85 RIPwplldprecaTTCLEHLEANGEVALVFGREYAGLTNEELQRCQFHVHIP---SDPEFG--SLNLAAAVQVLTYE 156
Cdd:cd18105 91 TIP----------ANELSELLLEKPTILVLGNEGRGLRTNIKNLCDYLVSIPggrSAENPGvdSLNVSVAAGILLHS 157
|
|
| SpoU-like_AviRb |
cd18107 |
SAM-dependent rRNA methylase related to AviRb; AviRb from Streptomyces viridochromogenes ... |
7-157 |
3.64e-04 |
|
SAM-dependent rRNA methylase related to AviRb; AviRb from Streptomyces viridochromogenes methylates the 2'-O atom of U2479 of the 23S ribosomal RNA. AviRb is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349980 Cd Length: 148 Bit Score: 39.68 E-value: 3.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 7 VVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPESFPHGDAVARAS-GATDILDAARVVDTLE-EALIGcsvvlgtSARDR 84
Cdd:cd18107 3 VLFDRPTSPGNLGTIIRSADALGAHGLVVTGHAADVYDPKTIRAStGSLFSLPIVRVPSNRElEDWVE-------ARKAR 75
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15599012 85 RIPWPLLDPRECATTCLEHLEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEV 157
Cdd:cd18107 76 GTPLQLVGTDEHGDHQIADHDFTRPTLLLIGNETAGLSAAWRELCDETVSIPMAGSASSLNAACAASIFLYEA 148
|
|
| SpoU-like |
cd18096 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
7-149 |
4.09e-04 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349969 Cd Length: 140 Bit Score: 39.51 E-value: 4.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 7 VVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPESF-PHGdavarASGATDILdAARVVDTLEEA----------LIGCSV 75
Cdd:cd18096 3 LVLHNVAKRHNIGTIVRSANAFGVKEVHLVGRRKFnPFG-----AMGTDRHV-KFRHFDTLAEAkeylkergirLVGVEI 76
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15599012 76 VLGTSARDRRiPWPlldprecattclehleanGEVALVFGREYAGLTNEELQRCQFHVHIpsdPEFG----SLNLAAA 149
Cdd:cd18096 77 VPGAEPIETH-PFP------------------GDTAFVLGNEGTGLSDEQLAICDGFVYI---PQYGsgtaSLNVSVA 132
|
|
| PRK10864 |
PRK10864 |
putative methyltransferase; Provisional |
9-156 |
3.66e-03 |
|
putative methyltransferase; Provisional
Pssm-ID: 236779 [Multi-domain] Cd Length: 346 Bit Score: 38.22 E-value: 3.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599012 9 LVNTSHPGNIGGAARAMKNMGLSQLVLVQPESFPHGDAVARASGATD---ILDAARVVDTLEE-ALIGCSVVLGTSARDr 84
Cdd:PRK10864 203 LEDVGNPHNLGGIMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEhvqPITGDSFVDVLDDfRQAGYTIVTTSSHKG- 281
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15599012 85 ripwplldprecatTCLEHLEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYE 156
Cdd:PRK10864 282 --------------TPLFKASLPAKMVLVLGQEYDGLSDAARQQGDLSVSIDGTGNVESLNVSVATGVLLAE 339
|
|
| SpoU-like_RNA-MTase |
cd18109 |
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
111-156 |
4.61e-03 |
|
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349982 Cd Length: 141 Bit Score: 36.36 E-value: 4.61e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 15599012 111 ALVFGREYAGLTNEELQRCQFHVHIPSDPEFG-SLNLAAAVQVLTYE 156
Cdd:cd18109 94 ILVMGNEGHGISPEVLKLLTHRLTIPRYGKGAeSLNVAVATAILLSE 140
|
|
| |
