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Conserved domains on  [gi|15610896|ref|NP_218277|]
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membrane protein [Mycobacterium tuberculosis H37Rv]

Protein Classification

LapA family protein( domain architecture ID 10009265)

LapA family protein similar to Bacillus subtilis protein YrvD

Gene Ontology:  GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YrvD COG5416
Uncharacterized integral membrane protein YrvD [Function unknown];
41-97 2.10e-15

Uncharacterized integral membrane protein YrvD [Function unknown];


:

Pssm-ID: 444169  Cd Length: 96  Bit Score: 65.27  E-value: 2.10e-15
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 15610896  41 IAQNTASAQFAFFGWRWSLPLGVAILLAAVGGGLITVFAGTARILQLRRAAKKTHAA 97
Cdd:COG5416  20 AVQNTQPVTVNFLFGQFELPLILVILGAFVLGALLGALAGLVRILRLRREIKRLRKE 76
 
Name Accession Description Interval E-value
YrvD COG5416
Uncharacterized integral membrane protein YrvD [Function unknown];
41-97 2.10e-15

Uncharacterized integral membrane protein YrvD [Function unknown];


Pssm-ID: 444169  Cd Length: 96  Bit Score: 65.27  E-value: 2.10e-15
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 15610896  41 IAQNTASAQFAFFGWRWSLPLGVAILLAAVGGGLITVFAGTARILQLRRAAKKTHAA 97
Cdd:COG5416  20 AVQNTQPVTVNFLFGQFELPLILVILGAFVLGALLGALAGLVRILRLRREIKRLRKE 76
LapA_dom pfam06305
Lipopolysaccharide assembly protein A domain; This family includes a domain found in ...
 43-93 3.70e-09

Lipopolysaccharide assembly protein A domain; This family includes a domain found in lipopolysaccharide assembly protein A (LapA). LapA functions along with LapB in the assembly of lipopolysaccharide (LPS). Domains in this family are also found in some uncharacterized bacterial proteins.


Pssm-ID: 428880  Cd Length: 64  Bit Score: 48.66  E-value: 3.70e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15610896    43 QNTASAQFAFFGWRWSLPLGVAILLAAVGGGLITVFAGTARILQLRRAAKK 93
Cdd:pfam06305   1 QNTQPVTVNFLFAQGELPLSLVLLIAFLIGALLGWLLSLPSYLRLRRELRR 51
 
Name Accession Description Interval E-value
YrvD COG5416
Uncharacterized integral membrane protein YrvD [Function unknown];
41-97 2.10e-15

Uncharacterized integral membrane protein YrvD [Function unknown];


Pssm-ID: 444169  Cd Length: 96  Bit Score: 65.27  E-value: 2.10e-15
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 15610896  41 IAQNTASAQFAFFGWRWSLPLGVAILLAAVGGGLITVFAGTARILQLRRAAKKTHAA 97
Cdd:COG5416  20 AVQNTQPVTVNFLFGQFELPLILVILGAFVLGALLGALAGLVRILRLRREIKRLRKE 76
LapA_dom pfam06305
Lipopolysaccharide assembly protein A domain; This family includes a domain found in ...
 43-93 3.70e-09

Lipopolysaccharide assembly protein A domain; This family includes a domain found in lipopolysaccharide assembly protein A (LapA). LapA functions along with LapB in the assembly of lipopolysaccharide (LPS). Domains in this family are also found in some uncharacterized bacterial proteins.


Pssm-ID: 428880  Cd Length: 64  Bit Score: 48.66  E-value: 3.70e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15610896    43 QNTASAQFAFFGWRWSLPLGVAILLAAVGGGLITVFAGTARILQLRRAAKK 93
Cdd:pfam06305   1 QNTQPVTVNFLFAQGELPLSLVLLIAFLIGALLGWLLSLPSYLRLRRELRR 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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