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Conserved domains on  [gi|15240104|ref|NP_201485|]
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SAP domain-containing protein [Arabidopsis thaliana]

Protein Classification

SAP domain-containing protein( domain architecture ID 10488483)

SAP (SAF-A/B, Acinus and PIAS) domain-containing protein may bind DNA or RNA and act as a transcriptional regulator

CATH:  1.10.720.30
Gene Ontology:  GO:0003676|GO:0003700
PubMed:  10694879
SCOP:  4002795

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SAP pfam02037
SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding ...
 90-124 4.64e-08

SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.


:

Pssm-ID: 460424 [Multi-domain]  Cd Length: 35  Bit Score: 48.94  E-value: 4.64e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15240104    90 LKSVNVKECKAYLRKHGLRLSGTKPVCIDRILEHW 124
Cdd:pfam02037   1 LSKLTVAELKEELRKRGLPTSGKKAELIERLQEYL 35
PAT1 super family cl37801
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 334-467 3.24e-06

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


The actual alignment was detected with superfamily member pfam09770:

Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 50.03  E-value: 3.24e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240104   334 PANFYTSRPHAPRSHAPPTYAPRPHAPRSYAPINSHLPRPNIPPYHSYTYSEQQNQTNQRPPPASYTYSTQQNQTNQRPP 413
Cdd:pfam09770 214 PAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVTILQRPQSPQPDPAQPSIQPQAQQFHQQPP 293

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 15240104   414 PASYTyPTQQNQTNQRPPPAFYirRTASNAPQGQASFNPHVNTHTVPVTHQRRP 467
Cdd:pfam09770 294 PVPVQ-PTQILQNPNRLSAARV--GYPQNPQPGVQPAPAHQAHRQQGSFGRQAP 344
 
Name Accession Description Interval E-value
SAP pfam02037
SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding ...
 90-124 4.64e-08

SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.


Pssm-ID: 460424 [Multi-domain]  Cd Length: 35  Bit Score: 48.94  E-value: 4.64e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15240104    90 LKSVNVKECKAYLRKHGLRLSGTKPVCIDRILEHW 124
Cdd:pfam02037   1 LSKLTVAELKEELRKRGLPTSGKKAELIERLQEYL 35
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 334-467 3.24e-06

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 50.03  E-value: 3.24e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240104   334 PANFYTSRPHAPRSHAPPTYAPRPHAPRSYAPINSHLPRPNIPPYHSYTYSEQQNQTNQRPPPASYTYSTQQNQTNQRPP 413
Cdd:pfam09770 214 PAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVTILQRPQSPQPDPAQPSIQPQAQQFHQQPP 293

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 15240104   414 PASYTyPTQQNQTNQRPPPAFYirRTASNAPQGQASFNPHVNTHTVPVTHQRRP 467
Cdd:pfam09770 294 PVPVQ-PTQILQNPNRLSAARV--GYPQNPQPGVQPAPAHQAHRQQGSFGRQAP 344
dnaA PRK14086
chromosomal replication initiator protein DnaA;
339-479 5.34e-05

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 45.97  E-value: 5.34e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240104  339 TSRPHAPRSHAPPTYAPRPHAPRSYAPINSHLPRPNIPPYHSYTySEQQNQTNQRPPPASYTYSTQQNQTNQRPPPASYT 418
Cdd:PRK14086 141 TARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPA-SYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWD 219

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15240104  419 YPTQQNQTNQRPPPAFYIRRTASNAPQGQASFNPHVNTHTVPVTHQRRPYQ-----NPHVSSNSGY 479
Cdd:PRK14086 220 RPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLAAQPAPapgpgEPTARLNPKY 285
SAP smart00513
Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation;
90-123 7.96e-04

Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation;


Pssm-ID: 128789 [Multi-domain]  Cd Length: 35  Bit Score: 37.08  E-value: 7.96e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 15240104     90 LKSVNVKECKAYLRKHGLRLSGTKPVCIDRILEH 123
Cdd:smart00513   1 LAKLKVSELKDELKKRGLSTSGTKAELVDRLLEA 34
 
Name Accession Description Interval E-value
SAP pfam02037
SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding ...
 90-124 4.64e-08

SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.


Pssm-ID: 460424 [Multi-domain]  Cd Length: 35  Bit Score: 48.94  E-value: 4.64e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15240104    90 LKSVNVKECKAYLRKHGLRLSGTKPVCIDRILEHW 124
Cdd:pfam02037   1 LSKLTVAELKEELRKRGLPTSGKKAELIERLQEYL 35
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 334-467 3.24e-06

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 50.03  E-value: 3.24e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240104   334 PANFYTSRPHAPRSHAPPTYAPRPHAPRSYAPINSHLPRPNIPPYHSYTYSEQQNQTNQRPPPASYTYSTQQNQTNQRPP 413
Cdd:pfam09770 214 PAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVTILQRPQSPQPDPAQPSIQPQAQQFHQQPP 293

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 15240104   414 PASYTyPTQQNQTNQRPPPAFYirRTASNAPQGQASFNPHVNTHTVPVTHQRRP 467
Cdd:pfam09770 294 PVPVQ-PTQILQNPNRLSAARV--GYPQNPQPGVQPAPAHQAHRQQGSFGRQAP 344
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 311-453 3.62e-06

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 50.03  E-value: 3.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240104   311 VAFPNQNPSQGHKNHPTQLTDMNPANFYTSRPHAPRSHAPPTYAPRPHAPRSYAPINSHLPrpnippyhsytyseqQNQT 390
Cdd:pfam09770 223 AAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVTILQRPQSPQPDPAQPSIQP---------------QAQQ 287

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15240104   391 NQRPPPASYTYSTQQNQTNQRPPPASYTYPTQQNQTNQRPPPAFYIRRTASNAPQGQASFNPH 453
Cdd:pfam09770 288 FHQQPPPVPVQPTQILQNPNRLSAARVGYPQNPQPGVQPAPAHQAHRQQGSFGRQAPIITHPQ 350
dnaA PRK14086
chromosomal replication initiator protein DnaA;
339-479 5.34e-05

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 45.97  E-value: 5.34e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240104  339 TSRPHAPRSHAPPTYAPRPHAPRSYAPINSHLPRPNIPPYHSYTySEQQNQTNQRPPPASYTYSTQQNQTNQRPPPASYT 418
Cdd:PRK14086 141 TARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPA-SYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWD 219

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15240104  419 YPTQQNQTNQRPPPAFYIRRTASNAPQGQASFNPHVNTHTVPVTHQRRPYQ-----NPHVSSNSGY 479
Cdd:PRK14086 220 RPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLAAQPAPapgpgEPTARLNPKY 285
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 302-433 1.50e-04

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 44.76  E-value: 1.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240104   302 QNTPANHSLV-AFPNQNPSQGHKNHP--TQLTDMNPANFYTSRPHAPrshaPPTYAPRPHAPRSYAPINSHLPRPnIPPy 378
Cdd:pfam03154 222 QSTAAPHTLIqQTPTLHPQRLPSPHPplQPMTQPPPPSQVSPQPLPQ----PSLHGQMPPMPHSLQTGPSHMQHP-VPP- 295

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 15240104   379 HSYTYSEQQNQTnQRPPPASYTYSTQQNQTNQRPPPASYTyPTQQNQTNQRPPPA 433
Cdd:pfam03154 296 QPFPLTPQSSQS-QVPPGPSPAAPGQSQQRIHTPPSQSQL-QSQQPPREQPLPPA 348
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
304-431 2.86e-04

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 43.50  E-value: 2.86e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240104   304 TPANHSLVAFPNQNPSQGHKNHPTQLTDMNPANFYTSRPHAPRShAPPTYAPRPhAPRSYAPINSHLPRPNIPPYHSYTY 383
Cdd:pfam05539 186 HPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSN-PEPQTEPPP-SQRGPSGSPQHPPSTTSQDQSTTGD 263

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 15240104   384 SEQQNQTNQRPPPASYTYSTQQNQTNQRPPPASYTY-----PTQQNQTNQRPP 431
Cdd:pfam05539 264 GQEHTQRRKTPPATSNRRSPHSTATPPPTTKRQETGrptprPTATTQSGSSPP 316
PHA03377 PHA03377
EBNA-3C; Provisional
 305-517 3.08e-04

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 43.89  E-value: 3.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240104   305 PANHSLVAFPNQNPSQGHKNHPTQLTDMNPANfYTSRPHAPRSHAPPTYAPRPHAPRSYApinshlPRPNIPP-YHSYTY 383
Cdd:PHA03377  563 PKASPPVMAPPSTGPRVMATPSTGPRDMAPPS-TGPRQQAKCKDGPPASGPHEKQPPSSA------PRDMAPSvVRMFLR 635

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240104   384 SEQQNQTNQRPPPASYTYSTQQNQTNQRPPPASYTYPTQQNQTNQ--RPPPAFYIRRTASNAPQGQASFNPHVNTHTVPV 461
Cdd:PHA03377  636 ERLLEQSTGPKPKSFWEMRAGRDGSGIQQEPSSRRQPATQSTPPRpsWLPSVFVLPSVDAGRAQPSEESHLSSMSPTQPI 715

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15240104   462 THQRRP-YQNPHVSSNSgynlgvrDLEHFSHMMISHRREGDTYRQSEVTQGPYMNHQ 517
Cdd:PHA03377  716 SHEEQPrYEDPDDPLDL-------SLHPDQAPPPSHQAPYSGHEEPQAQQAPYPGYW 765
PHA03247 PHA03247
large tegument protein UL36; Provisional
 334-473 3.83e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 3.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240104   334 PANFYTSRPHAPRSHAPPTYAPRPHAPRsyapinshLPRPNIPPYHSYTYSEQQNQTNQRPPPASytystQQNQTNQRPP 413
Cdd:PHA03247 2858 PGGDVRRRPPSRSPAAKPAAPARPPVRR--------LARPAVSRSTESFALPPDQPERPPQPQAP-----PPPQPQPQPP 2924

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15240104   414 PASYTYPTQQNQTNQRPPPAFYIRRTASNAPQGQA--SFNPHVNTHTVPVTHQRRPYQNPHV 473
Cdd:PHA03247 2925 PPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVpqPWLGALVPGRVAVPRFRVPQPAPSR 2986
PHA03378 PHA03378
EBNA-3B; Provisional
 302-452 7.81e-04

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 42.36  E-value: 7.81e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240104  302 QNTPANHSLVAFPNQNPS---QGHKNHPTQLTDMN----PANFYTSRPH--APRSHAPPTYAPRPHAPRSYAPINSHLPR 372
Cdd:PHA03378 639 QPITFNVLVFPTPHQPPQveiTPYKPTWTQIGHIPyqpsPTGANTMLPIqwAPGTMQPPPRAPTPMRPPAAPPGRAQRPA 718

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240104  373 ----PNIPPYHSYTYSE--QQNQTNQRPPPASYTYST--QQNQTNQRPPPASYTYPTQQNQTnqRPPPAFYIRRTASNAP 444
Cdd:PHA03378 719 aatgRARPPAAAPGRARppAAAPGRARPPAAAPGRARppAAAPGRARPPAAAPGAPTPQPPP--QAPPAPQQRPRGAPTP 796


                 ....*...
gi 15240104  445 QGQASFNP 452
Cdd:PHA03378 797 QPPPQAGP 804
SAP smart00513
Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation;
90-123 7.96e-04

Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation;


Pssm-ID: 128789 [Multi-domain]  Cd Length: 35  Bit Score: 37.08  E-value: 7.96e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 15240104     90 LKSVNVKECKAYLRKHGLRLSGTKPVCIDRILEH 123
Cdd:smart00513   1 LAKLKVSELKDELKKRGLSTSGTKAELVDRLLEA 34
YppG pfam14179
YppG-like protein; The YppG-like protein family includes the B. subtilis YppG protein, which ...
 374-456 1.95e-03

YppG-like protein; The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important.


Pssm-ID: 372950 [Multi-domain]  Cd Length: 101  Bit Score: 37.87  E-value: 1.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240104   374 NIPPYHSYTYSEQQnqTNQRPPPASYTYSTQQNQTNQRPPPASYTYPTQQNQtnQRPPPAFYIRRTASNAPQGQASFNPH 453
Cdd:pfam14179   1 YQHNSQPYPYFSQQ--VYQQPVQPQYPPFAPQQYMPQPPMPYMNPYPKQQPQ--QQQPSQFQSIMSQFKKSDGNYDFNKM 76


                  ...
gi 15240104   454 VNT 456
Cdd:pfam14179  77 MNT 79
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 262-478 5.99e-03

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 39.75  E-value: 5.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240104   262 IKSGYVLKDGRLQKPghvKKPCQVKTRKNEKDENLTQRLRQNT------PANHSLVA----FPNQNPSQGHKNHPTQLTD 331
Cdd:pfam03154 231 IQQTPTLHPQRLPSP---HPPLQPMTQPPPPSQVSPQPLPQPSlhgqmpPMPHSLQTgpshMQHPVPPQPFPLTPQSSQS 307

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240104   332 MNPANFYTSRPHAP--RSHAPPTY--APRPHAPRSYAPINSHLPRPNIPPYHSYTYSEQQNQTNQRPPPASYTYSTQQNQ 407
Cdd:pfam03154 308 QVPPGPSPAAPGQSqqRIHTPPSQsqLQSQQPPREQPLPPAPLSMPHIKPPPTTPIPQLPNPQSHKHPPHLSGPSPFQMN 387

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240104   408 TNQRPPPA--------------SYTYPTQ---QNQTNQRPPPAFYIRRTASNAPQGQASFNPHVNTHTVP-----VTHQR 465
Cdd:pfam03154 388 SNLPPPPAlkplsslsthhppsAHPPPLQlmpQSQQLPPPPAQPPVLTQSQSLPPPAASHPPTSGLHQVPsqspfPQHPF 467

                         250
                  ....*....|...
gi 15240104   466 RPYQNPHVSSNSG 478
Cdd:pfam03154 468 VPGGPPPITPPSG 480
DUF1373 pfam07117
Protein of unknown function (DUF1373); This family consists of several hypothetical proteins ...
 332-478 6.76e-03

Protein of unknown function (DUF1373); This family consists of several hypothetical proteins which seem to be specific to Oryzias latipes (Japanese ricefish). Members of this family are typically around 200 residues in length. The function of this family is unknown.


Pssm-ID: 462093 [Multi-domain]  Cd Length: 212  Bit Score: 38.23  E-value: 6.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240104   332 MNPANFYTSRPHAPRSHAPP-TYAPRPHAPRSYAPINSHLPRPNIPPYHSYTYSEQQNQTNQRPPPAS-----------Y 399
Cdd:pfam07117  32 LPLPPGQEPEPPRPEEEEGQgGGGGTFPFPGSPEPEPGGGGSGPMPMSASAPEPEPAKAKPQRPAPAQghghggggdsdS 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240104   400 TYS---TQQNQTNQRPPPASYTYPTQQNQT-----NQRPPPAF---------YIRRTASNAPQGQASFNPHVNTHTVPVT 462
Cdd:pfam07117 112 SGSgsgHQGSGGAGAGAGAPGHQHEQEQESsssddDDEDEFEFtpeededqaFAFKSRSNQKQKLFLFFQFRPTEPEPPQ 191

                         170
                  ....*....|....*....
gi 15240104   463 HQRRPYQNP---HVSSNSG 478
Cdd:pfam07117 192 EPEFPFPSKshqGKGKAKA 210
DUF1373 pfam07117
Protein of unknown function (DUF1373); This family consists of several hypothetical proteins ...
 367-433 8.64e-03

Protein of unknown function (DUF1373); This family consists of several hypothetical proteins which seem to be specific to Oryzias latipes (Japanese ricefish). Members of this family are typically around 200 residues in length. The function of this family is unknown.


Pssm-ID: 462093 [Multi-domain]  Cd Length: 212  Bit Score: 37.85  E-value: 8.64e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15240104   367 NSHLPRP-NIPPYHSY-----TYSEQQNQTNQRP-PPASYTYSTQqNQTNQRPPP---ASYTYPTQQNQTNQRPPPA 433
Cdd:pfam07117  23 NMAMARPmSLPLPPGQepeppRPEEEEGQGGGGGtFPFPGSPEPE-PGGGGSGPMpmsASAPEPEPAKAKPQRPAPA 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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