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Conserved domains on  [gi|15241727|ref|NP_201026|]
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Embryo-specific protein 3, (ATS3) [Arabidopsis thaliana]

Protein Classification

phospholipase C( domain architecture ID 10533319)

phospholipase C catayzes the hydroysis of a phosphatidylcholine to form 1,2-diacyl-sn-glycerol and phosphocholine

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATS3 pfam06232
Embryo-specific protein 3, (ATS3); This is a family of plant seed-specific proteins identified ...
 35-158 8.93e-78

Embryo-specific protein 3, (ATS3); This is a family of plant seed-specific proteins identified in Arabidopsis thaliana (Mouse-ear cress). ATS3 (Arabidopsis thaliana seed gene 3) is expressed in a pattern similar to the Arabidopsis seed storage protein genes.


:

Pssm-ID: 399320  Cd Length: 125  Bit Score: 228.11  E-value: 8.93e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241727    35 SFNVSLIQKLGNTCAYTVIISTSCSSTRYTRDQISVAFGDGYGNQIYAPRLDDPST-KTFEQCSSDTFQINGPCTYQICY 113
Cdd:pfam06232   1 AFIESLIQEMAATCTYTVIVKTSCASPARTRDQVSIAFGDAYGNEVYAPRLDDPSSgGGFEKCSSDTFQVGGQCLYPICY 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 15241727   114 VYLYRSGPDGWIPNTVKIYSHGSKAVTFPYNTYVPESVWYGFNYC 158
Cdd:pfam06232  81 LYLRRSGTDGWIPEWVQIYGEGSKSVTFYFNKYLPENVWYGFNVC 125
 
Name Accession Description Interval E-value
ATS3 pfam06232
Embryo-specific protein 3, (ATS3); This is a family of plant seed-specific proteins identified ...
 35-158 8.93e-78

Embryo-specific protein 3, (ATS3); This is a family of plant seed-specific proteins identified in Arabidopsis thaliana (Mouse-ear cress). ATS3 (Arabidopsis thaliana seed gene 3) is expressed in a pattern similar to the Arabidopsis seed storage protein genes.


Pssm-ID: 399320  Cd Length: 125  Bit Score: 228.11  E-value: 8.93e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241727    35 SFNVSLIQKLGNTCAYTVIISTSCSSTRYTRDQISVAFGDGYGNQIYAPRLDDPST-KTFEQCSSDTFQINGPCTYQICY 113
Cdd:pfam06232   1 AFIESLIQEMAATCTYTVIVKTSCASPARTRDQVSIAFGDAYGNEVYAPRLDDPSSgGGFEKCSSDTFQVGGQCLYPICY 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 15241727   114 VYLYRSGPDGWIPNTVKIYSHGSKAVTFPYNTYVPESVWYGFNYC 158
Cdd:pfam06232  81 LYLRRSGTDGWIPEWVQIYGEGSKSVTFYFNKYLPENVWYGFNVC 125
PLAT cd00113
PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. ...
 48-159 1.11e-32

PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.


Pssm-ID: 238061  Cd Length: 116  Bit Score: 113.20  E-value: 1.11e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241727  48 CAYTVIISTSCSSTRYTRDQISVAFGDGYGNQIYAPRLDDPStkTFEQCSSDTFQINGP-CTYQICYVYLYRSGP---DG 123
Cdd:cd00113   1 CRYTVTIKTGDKKGAGTDSNISLALYGENGNSSDIPILDGPG--SFERGSTDTFQIDLKlDIGDITKVYLRRDGSglsDG 78

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 15241727 124 WIPNTVKIYSHGSKAV-TFPYNTYVPESVWYGFNYCN 159
Cdd:cd00113  79 WYCESITVQALGTKKVyTFPVNRWVLGGKWYTSVRSL 115
 
Name Accession Description Interval E-value
ATS3 pfam06232
Embryo-specific protein 3, (ATS3); This is a family of plant seed-specific proteins identified ...
 35-158 8.93e-78

Embryo-specific protein 3, (ATS3); This is a family of plant seed-specific proteins identified in Arabidopsis thaliana (Mouse-ear cress). ATS3 (Arabidopsis thaliana seed gene 3) is expressed in a pattern similar to the Arabidopsis seed storage protein genes.


Pssm-ID: 399320  Cd Length: 125  Bit Score: 228.11  E-value: 8.93e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241727    35 SFNVSLIQKLGNTCAYTVIISTSCSSTRYTRDQISVAFGDGYGNQIYAPRLDDPST-KTFEQCSSDTFQINGPCTYQICY 113
Cdd:pfam06232   1 AFIESLIQEMAATCTYTVIVKTSCASPARTRDQVSIAFGDAYGNEVYAPRLDDPSSgGGFEKCSSDTFQVGGQCLYPICY 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 15241727   114 VYLYRSGPDGWIPNTVKIYSHGSKAVTFPYNTYVPESVWYGFNYC 158
Cdd:pfam06232  81 LYLRRSGTDGWIPEWVQIYGEGSKSVTFYFNKYLPENVWYGFNVC 125
PLAT cd00113
PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. ...
 48-159 1.11e-32

PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.


Pssm-ID: 238061  Cd Length: 116  Bit Score: 113.20  E-value: 1.11e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241727  48 CAYTVIISTSCSSTRYTRDQISVAFGDGYGNQIYAPRLDDPStkTFEQCSSDTFQINGP-CTYQICYVYLYRSGP---DG 123
Cdd:cd00113   1 CRYTVTIKTGDKKGAGTDSNISLALYGENGNSSDIPILDGPG--SFERGSTDTFQIDLKlDIGDITKVYLRRDGSglsDG 78

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 15241727 124 WIPNTVKIYSHGSKAV-TFPYNTYVPESVWYGFNYCN 159
Cdd:cd00113  79 WYCESITVQALGTKKVyTFPVNRWVLGGKWYTSVRSL 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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