|
Name |
Accession |
Description |
Interval |
E-value |
| ABC2_membrane_7 |
pfam19055 |
ABC-2 type transporter; |
697-1109 |
0e+00 |
|
ABC-2 type transporter;
Pssm-ID: 465963 [Multi-domain] Cd Length: 409 Bit Score: 883.48 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 697 HQPSYTLFRMFDDLILLAKGGLICYQGPVKKVEEYFSSLGIVVPERVNPPDYYIDILEGILKPSTSSGVTYKQLPVRWML 776
Cdd:pfam19055 1 HQPSYTLFKMFDDLILLAKGGLTVYHGPVKKVEEYFAGLGINVPERVNPPDHFIDILEGIVKPSTSSGVDYKQLPVRWML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 777 HNGYPVPMDMLKSIEGMASSaSGENSAHGGSahgSVVGDDGTSFAGEFWQDVKANVEIKKDNLQNNFSSSGDLSEREVPG 856
Cdd:pfam19055 81 HNGYPVPPDMLQNADGIAAS-SGENSSNGTN---PGVGSEEQSFAGELWQDVKSNVELKRDHIRHNFLKSKDLSNRRTPG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 857 VYQQYRYFLGRLGKQRLREARTLAVDYLILLLAGICLGTLAKVSDETFGAMGYTYTVIAVSLLCKITALRSFSLDKLHYW 936
Cdd:pfam19055 157 VFRQYRYFLGRVGKQRLREARIQAVDYLILLLAGACLGTLAKVSDETFGALGYTYTIIAVSLLCKIAALRSFSLDKLQYW 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 937 RESRAGMSSLAYFLAKDTVDHFNTIVKPLVYLSMFYFFNNPRSTVTDNYVVLICLVYCVTGIAYTLAILFEPGPAQLWSV 1016
Cdd:pfam19055 237 RESASGMSSLAYFLAKDTIDHFNTVIKPLVYLSMFYFFNNPRSSFADNYIVLLCLVYCVTGIAYALAIFFEPGPAQLWSV 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 1017 LLPVVLTLIATSTNDNKIVDSISELCYTRWALEAFVVSNAQRYKGVWLITRCGSLMENGYNIKHFPRCLVFLTLTGILSR 1096
Cdd:pfam19055 317 LLPVVLTLIATQTNDSKFLKVLANLCYPKWALEAFVIANAERYSGVWLITRCGALMKSGYDLHDWGLCLVILILYGVLSR 396
|
410
....*....|...
gi 240256467 1097 CAAFFCMVTFQKK 1109
Cdd:pfam19055 397 IIAFFCMVTFQKK 409
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
496-723 |
7.00e-72 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 237.06 E-value: 7.00e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 496 MIEVAFKDLSITLKGKN----KHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCIMTGMILVNGKVESIQSY 571
Cdd:cd03213 1 GVTLSFRNLTVTVKSSPsksgKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 572 KKIIGFVPQDDIVHGNLTVEENLWFSARCrlpadlpkpekvlvvervieslglqhvrdslvgtvekRGISGGQRKRVNVG 651
Cdd:cd03213 81 RKIIGYVPQDDILHPTLTVRETLMFAAKL-------------------------------------RGLSGGERKRVSIA 123
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 240256467 652 LEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVVHQPSYTLFRMFDDLILLAKGGLIcYQG 723
Cdd:cd03213 124 LELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI-YFG 194
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
513-1103 |
7.64e-62 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 223.00 E-value: 7.64e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 513 KHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGK-APGCIMTGMILVNGKVESIQSYKKIIGFVPQDDIVHGNLTVE 591
Cdd:TIGR00955 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRsPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVR 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 592 ENLWFSARCRLPADLPKPEKVLVVERVIESLGLQHVRDSLVGTV-EKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGL 670
Cdd:TIGR00955 118 EHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPgRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 671 DSSSSQLLLRALRREALEGVNICMVVHQPSYTLFRMFDDLILLAKGGLIcYQGPVKKVEEYFSSLGIVVPERVNPPDYYI 750
Cdd:TIGR00955 198 DSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVA-YLGSPDQAVPFFSDLGHPCPENYNPADFYV 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 751 DILegilkpstsSGVTYKQLPVRWMLHngypvpmdmlKSIEGMASSasgensahggSAHGSVvgddgtsfagefwqDVKA 830
Cdd:TIGR00955 277 QVL---------AVIPGSENESRERIE----------KICDSFAVS----------DIGRDM--------------LVNT 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 831 NVEIKKdnlQNNFSSSGDLSE--REVPGVYQQYRYFLGRLGKQRLREARTLAVDYLILLLAGICLGTL------------ 896
Cdd:TIGR00955 314 NLWSGK---AGGLVKDSENMEgiGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIylgqgltqkgvq 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 897 -------AKVSDETFGAMgytYTVIAVsllckITALRSFSLdklhywRESRAGMSSL-AYFLAKDTVDHFNTIVKPLVYL 968
Cdd:TIGR00955 391 ningalfLFLTNMTFQNV---FPVINV-----FTAELPVFL------RETRSGLYRVsAYFLAKTIAELPLFIILPALFT 456
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 969 SMFYFFNNPRSTVTdNYVVLICLVYCV----TGIAYTLAILFEPGPAQLwSVLLPVVLTLIATS---TNdnkiVDSI--- 1038
Cdd:TIGR00955 457 SITYWMIGLRSGAT-HFLTFLFLVTLVanvaTSFGYLISCAFSSTSMAL-TVGPPFVIPFLLFGgffIN----SDSIpvy 530
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 240256467 1039 ----SELCYTRWALEAFVV---SNAQRYK-------GVWLITRCGSLMENGYNIKHFPRCLVFLTLTGILSRCAAFFCM 1103
Cdd:TIGR00955 531 fkwlSYLSWFRYGNEGLLInqwSDVDNIEctsanttGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFAL 609
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
509-723 |
4.63e-51 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 179.39 E-value: 4.63e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 509 KGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCIMT-GMILVNGKVESIQSYKKIIGFVPQDDIVHGN 587
Cdd:cd03234 16 WNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTsGQILFNGQPRKPDQFQKCVAYVRQDDILLPG 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 588 LTVEENLWFSARCRLPADLPKPEKVLVVERVIES-LGLQHVRDSLVgtvekRGISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:cd03234 96 LTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRdLALTRIGGNLV-----KGISGGERRRVSIAVQLLWDPKVLILDEP 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 240256467 667 TSGLDSSSSQLLLRALRREALEGVNICMVVHQPSYTLFRMFDDLILLAKGGLIcYQG 723
Cdd:cd03234 171 TSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIV-YSG 226
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
494-771 |
9.69e-50 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 188.16 E-value: 9.69e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 494 RPMIEVAFKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCIMTGMILVNGKVESIQSYKK 573
Cdd:PLN03211 62 KRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKR 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 574 IiGFVPQDDIVHGNLTVEENLWFSARCRLPADLPKPEKVLVVERVIESLGLQHVRDSLVGTVEKRGISGGQRKRVNVGLE 653
Cdd:PLN03211 142 T-GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHE 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 654 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVVHQPSYTLFRMFDDLILLAKGGLIcYQGPVKKVEEYFS 733
Cdd:PLN03211 221 MLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL-FFGKGSDAMAYFE 299
|
250 260 270
....*....|....*....|....*....|....*...
gi 240256467 734 SLGIVVPERVNPPDYYIDILEGILKpstSSGVTYKQLP 771
Cdd:PLN03211 300 SVGFSPSFPMNPADFLLDLANGVCQ---TDGVSEREKP 334
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
502-1024 |
7.39e-48 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 186.85 E-value: 7.39e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 502 KDLS--ITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCIMT-GMILVNG-KVESiqSYKKIIGF 577
Cdd:TIGR00956 763 RNLTyeVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITgGDRLVNGrPLDS--SFQRSIGY 840
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 578 VPQDDIVHGNLTVEENLWFSARCRLPADLPKPEKVLVVERVIESLGLQHVRDSLVGTVEKrGISGGQRKRVNVGLEMVME 657
Cdd:TIGR00956 841 VQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVAK 919
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 658 PSLLI-LDEPTSGLDSSSSQLLLRALRREALEGVNICMVVHQPSYTLFRMFDDLILLAKGGLICYQGPV----KKVEEYF 732
Cdd:TIGR00956 920 PKLLLfLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLgensHTIINYF 999
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 733 SSLGIV-VPERVNPPDyyidilegilkpstssgvtykqlpvrWMLhngypvpmdmlkSIEGMASSASGENSAHggsahgs 811
Cdd:TIGR00956 1000 EKHGAPkCPEDANPAE--------------------------WML------------EVIGAAPGAHANQDYH------- 1034
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 812 vvgddgtsfagEFW------QDVKANVeikkDNLQNNFSSSGDLSEREVPGVY-----QQYRYFLGRLGKQRLREARTLA 880
Cdd:TIGR00956 1035 -----------EVWrnsseyQAVKNEL----DRLEAELSKAEDDNDPDALSKYaaslwYQFKLVLWRTFQQYWRTPDYLY 1099
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 881 VDYLILLLAGICLG-TLAKVSDETFG---AMG--YTYTVIAVSLLCKItaLRSF-SLDKLHYWRESRAGM-SSLAYFLAK 952
Cdd:TIGR00956 1100 SKFFLTIFAALFIGfTFFKVGTSLQGlqnQMFavFMATVLFNPLIQQY--LPPFvAQRDLYEVRERPSRTfSWLAFIAAQ 1177
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 953 DTVD-HFNTIVKPLVYLSMFY---FFNN--PRSTVTDNYV---VLICLVYCVTGIAYTLAILFEPGpAQLWSVLLPVVLT 1023
Cdd:TIGR00956 1178 ITVEiPYNLVAGTIFFFIWYYpvgFYWNasKTGQVHERGVlfwLLSTMFFLYFSTLGQMVISFNPN-ADNAAVLASLLFT 1256
|
.
gi 240256467 1024 L 1024
Cdd:TIGR00956 1257 M 1257
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
515-752 |
2.95e-41 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 165.79 E-value: 2.95e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 515 LMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCIMTGMILVNGKVESIQSYKKIIGFVPQDDIVHGNLTVEENL 594
Cdd:PLN03140 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESL 974
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 595 WFSARCRLPADLPKPEKVLVVERVIESLGLQHVRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSS 674
Cdd:PLN03140 975 IYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1054
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 675 SQLLLRALRREALEGVNICMVVHQPSYTLFRMFDDLILLAKGGLICYQGPV----KKVEEYFSSLGIV--VPERVNPPDY 748
Cdd:PLN03140 1055 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLgrnsHKIIEYFEAIPGVpkIKEKYNPATW 1134
|
....
gi 240256467 749 YIDI 752
Cdd:PLN03140 1135 MLEV 1138
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
501-723 |
1.83e-40 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 147.77 E-value: 1.83e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 501 FKDLSITL--KGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCIMTGMILVNGKvESIQSYKKIIGFV 578
Cdd:cd03232 6 WKNLNYTVpvKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGR-PLDKNFQRSTGYV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 579 PQDDIVHGNLTVEENLWFSARCRlpadlpkpekvlvvervieslglqhvrdslvgtvekrGISGGQRKRVNVGLEMVMEP 658
Cdd:cd03232 85 EQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRKRLTIGVELAAKP 127
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 240256467 659 SLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVVHQPSYTLFRMFDDLILLAKGGLICYQG 723
Cdd:cd03232 128 SILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
525-667 |
3.79e-31 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 122.48 E-value: 3.79e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 525 PGRVSAVMGPSGAGKTTFLTALTGkapgcIMT---GMILVNGK--VESIQSYKKIIGFVPQDDIVHGNLTVEENLWFSAR 599
Cdd:COG1131 25 PGEIFGLLGPNGAGKTTTIRMLLG-----LLRptsGEVRVLGEdvARDPAEVRRRIGYVPQEPALYPDLTVRENLRFFAR 99
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 240256467 600 CRlpaDLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:COG1131 100 LY---GLPRKEARERIDELLELFGLTDAADRKVGT-----LSGGMKQRLGLALALLHDPELLILDEPT 159
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
519-667 |
9.53e-31 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 118.52 E-value: 9.53e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 519 VTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGciMTGMILVNGK---VESIQSYKKIIGFVPQDDIVHGNLTVEENLW 595
Cdd:pfam00005 4 VSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSP--TEGTILLDGQdltDDERKSLRKEIGYVFQDPQLFPRLTVRENLR 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 240256467 596 FSARCRLPADLPKPEKVlvvERVIESLGLQHVRDSLVGtVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:pfam00005 82 LGLLLKGLSKREKDARA---EEALEKLGLGDLADRPVG-ERPGTLSGGQRQRVAIARALLTKPKLLLLDEPT 149
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
494-748 |
3.80e-28 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 123.42 E-value: 3.80e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 494 RPMIEVAFKDLSITLKGKNK-HLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKA-PGCIMTGMILVNGKVESIQSY 571
Cdd:PLN03140 158 RNIAESALGMLGINLAKKTKlTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLdPSLKVSGEITYNGYRLNEFVP 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 572 KKIIGFVPQDDIVHGNLTVEENLWFSARCR-------LPADLPKPEK------------------------VLVVERVIE 620
Cdd:PLN03140 238 RKTSAYISQNDVHVGVMTVKETLDFSARCQgvgtrydLLSELARREKdagifpeaevdlfmkatamegvksSLITDYTLK 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 621 SLGLQHVRDSLVGTVEKRGISGGQRKRVNVGlEMVMEPS-LLILDE-PTSGLDSSSSQLLLRALRREALEGVNICMVVHQ 698
Cdd:PLN03140 318 ILGLDICKDTIVGDEMIRGISGGQKKRVTTG-EMIVGPTkTLFMDEiSTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQ 396
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 240256467 699 PSYTLFRMFDDLILLAKGGlICYQGPVKKVEEYFSSLGIVVPERVNPPDY 748
Cdd:PLN03140 397 PAPETFDLFDDIILLSEGQ-IVYQGPRDHILEFFESCGFKCPERKGTADF 445
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
475-748 |
1.16e-27 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 121.75 E-value: 1.16e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 475 KNLTFSGVismanDIDIRKRPMI--------EVAFKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTAL 546
Cdd:TIGR00956 33 KNLSAYGV-----AADSDYQPTFpnallkilTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTI 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 547 TGKAPGCIM--TGMILVNG--KVESIQSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLPADLPK--PEKVL---VVER 617
Cdd:TIGR00956 108 ASNTDGFHIgvEGVITYDGitPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDgvSREEYakhIADV 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 618 VIESLGLQHVRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSsqlllralrreALEGVNIC---- 693
Cdd:TIGR00956 188 YMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSAT-----------ALEFIRALktsa 256
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 240256467 694 --------MVVHQPSYTLFRMFDDLILLAKGGLIcYQGPVKKVEEYFSSLGIVVPERVNPPDY 748
Cdd:TIGR00956 257 nildttplVAIYQCSQDAYELFDKVIVLYEGYQI-YFGPADKAKQYFEKMGFKCPDRQTTADF 318
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
502-666 |
3.01e-27 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 110.65 E-value: 3.01e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 502 KDLSITLKGKnkHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTG-KAPGCIMTGMILVNGK-VESIQSYKKIIGFVP 579
Cdd:COG4136 5 ENLTITLGGR--PLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGtLSPAFSASGEVLLNGRrLTALPAEQRRIGILF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 580 QDDIVHGNLTVEENLWFSarcrLPADLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVgLEMVM-EP 658
Cdd:COG4136 83 QDDLLFPHLSVGENLAFA----LPPTIGRAQRRARVEQALEEAGLAGFADRDPAT-----LSGGQRARVAL-LRALLaEP 152
|
....*...
gi 240256467 659 SLLILDEP 666
Cdd:COG4136 153 RALLLDEP 160
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
502-667 |
8.24e-26 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 106.82 E-value: 8.24e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 502 KDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgciMT-GMILVNGK--VESIQSYKKIIGFV 578
Cdd:cd03263 4 RNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR---PTsGTAYINGYsiRTDRKAARQSLGYC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 579 PQDDIVHGNLTVEENLWFSARCRlpaDLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEP 658
Cdd:cd03263 81 PQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIALIGGP 152
|
....*....
gi 240256467 659 SLLILDEPT 667
Cdd:cd03263 153 SVLLLDEPT 161
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
496-667 |
2.22e-25 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 106.10 E-value: 2.22e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 496 MIEV-----------AFKDLSITLKgknkhlmrcvtgklsPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNG- 563
Cdd:COG4555 1 MIEVenlskkygkvpALKDVSFTAK---------------DGEITGLLGPNGAGKTTLLRMLAGLLK--PDSGSILIDGe 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 564 -KVESIQSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRlpaDLPKPEKVLVVERVIESLGLQHVRDSLVGtvekrGISG 642
Cdd:COG4555 64 dVRKEPREARRQIGVLPDERGLYDRLTVRENIRYFAELY---GLFDEELKKRIEELIELLGLEEFLDRRVG-----ELST 135
|
170 180
....*....|....*....|....*
gi 240256467 643 GQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:COG4555 136 GMKKKVALARALVHDPKVLLLDEPT 160
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
505-723 |
1.12e-24 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 102.73 E-value: 1.12e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 505 SITLKGKNKH-LMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCI-MTGMILVNG--KVESIQSYKKIIGFVPQ 580
Cdd:cd03233 11 FTTGKGRSKIpILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVsVEGDIHYNGipYKEFAEKYPGEIIYVSE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 581 DDIVHGNLTVEENLWFSARCRlpadlpkpekvlvvervieslGLQHVRdslvgtvekrGISGGQRKRVNVGLEMVMEPSL 660
Cdd:cd03233 91 EDVHFPTLTVRETLDFALRCK---------------------GNEFVR----------GISGGERKRVSIAEALVSRASV 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 240256467 661 LILDEPTSGLDSSSSQLLLRALRR--EALEGVNIcMVVHQPSYTLFRMFDDLILLAKGGLIcYQG 723
Cdd:cd03233 140 LCWDNSTRGLDSSTALEILKCIRTmaDVLKTTTF-VSLYQASDEIYDLFDKVLVLYEGRQI-YYG 202
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
496-728 |
1.55e-24 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 103.97 E-value: 1.55e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 496 MIEVafKDLSITLKGKnkHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTG-KAPGcimTGMILVNGKveSIQSYK-- 572
Cdd:COG1120 1 MLEA--ENLSVGYGGR--PVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGlLKPS---SGEVLLDGR--DLASLSrr 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 573 ---KIIGFVPQDDIVHGNLTVEENLwfsARCRLPA----DLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQR 645
Cdd:COG1120 72 elaRRIAYVPQEPPAPFGLTVRELV---ALGRYPHlglfGRPSAEDREAVEEALERTGLEHLADRPVDE-----LSGGER 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 646 KRVnvGLEMVM--EPSLLILDEPTSgldssssqlllralrreAL------------------EGVNICMVVHQPsyTL-F 704
Cdd:COG1120 144 QRV--LIARALaqEPPLLLLDEPTS-----------------HLdlahqlevlellrrlareRGRTVVMVLHDL--NLaA 202
|
250 260
....*....|....*....|....
gi 240256467 705 RMFDDLILLAKGGLICyQGPVKKV 728
Cdd:COG1120 203 RYADRLVLLKDGRIVA-QGPPEEV 225
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
501-667 |
4.64e-24 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 101.39 E-value: 4.64e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 501 FKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTG-KAPgciMTGMILVNGKV---ESIQSYKKIIG 576
Cdd:cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGlLGP---TSGEVLVDGKDltkLSLKELRRKVG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 577 FV---PQDDIVhgNLTVEENLWFSARCRLpadLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLE 653
Cdd:cd03225 79 LVfqnPDDQFF--GPTVEEEVAFGLENLG---LPEEEIEERVEEALELVGLEGLRDRSPFT-----LSGGQKQRVAIAGV 148
|
170
....*....|....
gi 240256467 654 MVMEPSLLILDEPT 667
Cdd:cd03225 149 LAMDPDILLLDEPT 162
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
506-667 |
1.24e-23 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 99.96 E-value: 1.24e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 506 ITLKG-----KNKHLMRCVTGKLSPGrVSAVMGPSGAGKTTFLTALTGKAPgciMT-GMILVNGK--VESIQSYKKIIGF 577
Cdd:cd03264 1 LQLENltkryGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP---PSsGTIRIDGQdvLKQPQKLRRRIGY 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 578 VPQDDIVHGNLTVEENLWFSARCRlpaDLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVME 657
Cdd:cd03264 77 LPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKIGS-----LSGGMRRRVGIAQALVGD 148
|
170
....*....|
gi 240256467 658 PSLLILDEPT 667
Cdd:cd03264 149 PSILIVDEPT 158
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
495-728 |
2.28e-23 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 100.16 E-value: 2.28e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 495 PMIEVafKDLSITLKGKNkhLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGKveSIQSYKKI 574
Cdd:COG1121 5 PAIEL--ENLTVSYGGRP--VLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLP--PTSGTVRLFGK--PPRRARRR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 575 IGFVPQDDIVHGN--LTVEE----NLWfsARCRLPADLPKPEKvLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRV 648
Cdd:COG1121 77 IGYVPQRAEVDWDfpITVRDvvlmGRY--GRRGLFRRPSRADR-EAVDEALERVGLEDLADRPIGE-----LSGGQQQRV 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 649 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVVHQPSyTLFRMFDDLILLAKGglICYQGPVKKV 728
Cdd:COG1121 149 LLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRREGKTILVVTHDLG-AVREYFDRVLLLNRG--LVAHGPPEEV 225
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
501-666 |
4.07e-22 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 95.66 E-value: 4.07e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 501 FKDLSITLkGKNKHLMRcVTGKLSPGRVSAVMGPSGAGKTTFLTALTG--KAPGcimtGMILVNGK-VESIQSYKKIIGF 577
Cdd:cd03259 3 LKGLSKTY-GSVRALDD-LSLTVEPGEFLALLGPSGCGKTTLLRLIAGleRPDS----GEILIDGRdVTGVPPERRNIGM 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 578 VPQDDIVHGNLTVEENLWFSARCRLpadLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVME 657
Cdd:cd03259 77 VFQDYALFPHLTVAENIAFGLKLRG---VPKAEIRARVRELLELVGLEGLLNRYPHE-----LSGGQQQRVALARALARE 148
|
....*....
gi 240256467 658 PSLLILDEP 666
Cdd:cd03259 149 PSLLLLDEP 157
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
522-667 |
6.73e-22 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 95.58 E-value: 6.73e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 522 KLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGK-VESIQSYKKI---IGFVPQDDIVHGNLTVEENLWFS 597
Cdd:cd03224 22 TVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRdITGLPPHERAragIGYVPEGRRIFPELTVEENLLLG 99
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 240256467 598 ARCRLPADLPK-PEKVLVV-----ERvieslglqhvRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:cd03224 100 AYARRRAKRKArLERVYELfprlkER----------RKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPS 160
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
494-667 |
8.86e-22 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 100.36 E-value: 8.86e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 494 RPMIEVafKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAP-GCIMTGMILVNGKV---ESIQ 569
Cdd:COG1123 2 TPLLEV--RDLSVRYPGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPhGGRISGEVLLDGRDlleLSEA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 570 SYKKIIGFVPQDDIVHGN-LTVEENLWFSARCRlpaDLPKPEKVLVVERVIESLGLQHVRDSLVGTVekrgiSGGQRKRV 648
Cdd:COG1123 80 LRGRRIGMVFQDPMTQLNpVTVGDQIAEALENL---GLSRAEARARVLELLEAVGLERRLDRYPHQL-----SGGQRQRV 151
|
170
....*....|....*....
gi 240256467 649 NVGLEMVMEPSLLILDEPT 667
Cdd:COG1123 152 AIAMALALDPDLLIADEPT 170
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
501-723 |
9.45e-22 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 94.91 E-value: 9.45e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 501 FKDLSITLKgkNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCimTGMILVNGKveSIQSYKKIIGFVPQ 580
Cdd:cd03235 2 VEDLTVSYG--GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT--SGSIRVFGK--PLEKERKRIGYVPQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 581 DDIVHGN--LTVEE----NLWfsARCRLPADLPKPEKVLVvERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEM 654
Cdd:cd03235 76 RRSIDRDfpISVRDvvlmGLY--GHKGLFRRLSKADKAKV-DEALERVGLSELADRQIGE-----LSGGQQQRVLLARAL 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 240256467 655 VMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVVHQPSyTLFRMFDDLILLAKGglICYQG 723
Cdd:cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNRT--VVASG 213
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
501-667 |
9.55e-21 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 91.77 E-value: 9.55e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 501 FKDLSITLkgknkhlmrcvtgklSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGK--VESIQSYKKIIGFV 578
Cdd:COG4133 18 FSGLSFTL---------------AAGEALALTGPNGSGKTTLLRILAGLLP--PSAGEVLWNGEpiRDAREDYRRRLAYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 579 PQDDIVHGNLTVEENLWFSAR---CRLPADLpkpekvlvVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMV 655
Cdd:COG4133 81 GHADGLKPELTVRENLRFWAAlygLRADREA--------IDEALEAVGLAGLADLPVRQ-----LSAGQKRRVALARLLL 147
|
170
....*....|..
gi 240256467 656 MEPSLLILDEPT 667
Cdd:COG4133 148 SPAPLWLLDEPF 159
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
517-667 |
1.35e-20 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 91.66 E-value: 1.35e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 517 RCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGK--VESIQSYKKIIGFVPQDDIVHGNLTVEENL 594
Cdd:cd03265 17 RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHdvVREPREVRRRIGIVFQDLSVDDELTGWENL 94
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 240256467 595 WFSARCrlpADLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:cd03265 95 YIHARL---YGVPGAERRERIDELLDFVGLLEAADRLVKT-----YSGGMRRRLEIARSLVHRPEVLFLDEPT 159
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
499-728 |
3.43e-20 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 90.85 E-value: 3.43e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 499 VAFKDLSITLKGKNKHLmRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTG-KAPgciMTGMILVNGKV---ESIQSYKKI 574
Cdd:COG1122 1 IELENLSFSYPGGTPAL-DDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGlLKP---TSGEVLVDGKDitkKNLRELRRK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 575 IGFVPQD-D--IVhgNLTVEENLWFSARCRlpaDLPKPEKVLVVERVIESLGLQHVRD----SLvgtvekrgiSGGQRKR 647
Cdd:COG1122 77 VGLVFQNpDdqLF--APTVEEDVAFGPENL---GLPREEIRERVEEALELVGLEHLADrpphEL---------SGGQKQR 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 648 VNV-GLeMVMEPSLLILDEPTsgldssssqlllrALRRE--------ALEGVNICMVVHQPSYtLFRMFDDLILLAKGGL 718
Cdd:COG1122 143 VAIaGV-LAMEPEVLVLDEPTagl--------dpRGRREllellkrlNKEGKTVIIVTHDLDL-VAELADRVIVLDDGRI 212
|
250
....*....|
gi 240256467 719 IcYQGPVKKV 728
Cdd:COG1122 213 V-ADGTPREV 221
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
495-667 |
1.05e-19 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 89.33 E-value: 1.05e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 495 PMIEVafKDLSITLK-GKNK-HLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALtgkapGCIMT---GMILVNGKveSIQ 569
Cdd:COG1136 3 PLLEL--RNLTKSYGtGEGEvTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNIL-----GGLDRptsGEVLIDGQ--DIS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 570 SYKKI---------IGFVPQDdivH---GNLTVEENLWFSArcrLPADLPKPEKVLVVERVIESLGLQHVRDSLVGTvek 637
Cdd:COG1136 74 SLSERelarlrrrhIGFVFQF---FnllPELTALENVALPL---LLAGVSRKERRERARELLERVGLGDRLDHRPSQ--- 144
|
170 180 190
....*....|....*....|....*....|
gi 240256467 638 rgISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:COG1136 145 --LSGGQQQRVAIARALVNRPKLILADEPT 172
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
505-667 |
2.12e-19 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 88.55 E-value: 2.12e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 505 SITLKGKNKHLmRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGciMTGMILVNGK-VESIQSYKKIIGFVPQDDI 583
Cdd:cd03299 5 NLSKDWKEFKL-KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP--DSGKILLNGKdITNLPPEKRDISYVPQNYA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 584 VHGNLTVEENLWFSARCRLpadLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLIL 663
Cdd:cd03299 82 LFPHMTVYKNIAYGLKKRK---VDKKEIERKVLEIAEMLGIDHLLNRKPET-----LSGGEQQRVAIARALVVNPKILLL 153
|
....
gi 240256467 664 DEPT 667
Cdd:cd03299 154 DEPF 157
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
519-667 |
2.24e-19 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 88.65 E-value: 2.24e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 519 VTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGciMTGMILVNGKvesiqsykKIIGFvPQDDIVH------------- 585
Cdd:cd03219 19 VSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP--TSGSVLFDGE--------DITGL-PPHEIARlgigrtfqiprlf 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 586 GNLTVEENLWFSARCRLPADL-----PKPEKVLV--VERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEP 658
Cdd:cd03219 88 PELTVLENVMVAAQARTGSGLllaraRREEREARerAEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDP 162
|
....*....
gi 240256467 659 SLLILDEPT 667
Cdd:cd03219 163 KLLLLDEPA 171
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
502-721 |
2.80e-19 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 86.72 E-value: 2.80e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 502 KDLSITLKGKnkHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCimTGMILVNGKveSIQSYK-----KIIG 576
Cdd:cd03214 3 ENLSVGYGGR--TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS--SGEILLDGK--DLASLSpkelaRKIA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 577 FVPQddivhgnltveenlwfsarcrlpadlpkpekvlvverVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVM 656
Cdd:cd03214 77 YVPQ-------------------------------------ALELLGLAHLADRPFNE-----LSGGERQRVLLARALAQ 114
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 240256467 657 EPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICMVVHQPSYTLfRMFDDLILLAKGGLICY 721
Cdd:cd03214 115 EPPILLLDEPTSHLDIAHQIELLELLRRLARErGKTVVMVLHDLNLAA-RYADRVILLKDGRIVAQ 179
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
499-667 |
3.12e-19 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 86.30 E-value: 3.12e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 499 VAFKDLSITLKgknkhlmrcvtgklsPGRVSAVMGPSGAGKTTFLTALTGkapgcIMT---GMILVNGK--VESIQSYKK 573
Cdd:cd03230 14 TALDDISLTVE---------------KGEIYGLLGPNGAGKTTLIKIILG-----LLKpdsGEIKVLGKdiKKEPEEVKR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 574 IIGFVPQDDIVHGNLTVEENLWFsarcrlpadlpkpekvlvvervieslglqhvrdslvgtvekrgiSGGQRKRVNVGLE 653
Cdd:cd03230 74 RIGYLPEEPSLYENLTVRENLKL--------------------------------------------SGGMKQRLALAQA 109
|
170
....*....|....
gi 240256467 654 MVMEPSLLILDEPT 667
Cdd:cd03230 110 LLHDPELLILDEPT 123
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
514-667 |
4.41e-19 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 87.58 E-value: 4.41e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 514 HLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGK-VESIQSYKKI---IGFVPQDDIVHGNLT 589
Cdd:TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEdITKLPPHERAragIAYVPQGREIFPRLT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 590 VEENLWFSARCRLPADLPKPEKVLVVERVieslgLQHVRDslvgtveKRG--ISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:TIGR03410 92 VEENLLTGLAALPRRSRKIPDEIYELFPV-----LKEMLG-------RRGgdLSGGQQQQLAIARALVTRPKLLLLDEPT 159
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
499-667 |
3.70e-18 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 84.46 E-value: 3.70e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 499 VAFKDLSITLK--GKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALtgkapGCIMT---GMILVNGKVESIQSYKK 573
Cdd:cd03255 1 IELKNLSKTYGggGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNIL-----GGLDRptsGEVRVDGTDISKLSEKE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 574 I-------IGFVPQDDIVHGNLTVEENLwfsarcRLPADL---PKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGG 643
Cdd:cd03255 76 LaafrrrhIGFVFQSFNLLPDLTALENV------ELPLLLagvPKKERRERAEELLERVGLGDRLNHYPSE-----LSGG 144
|
170 180
....*....|....*....|....
gi 240256467 644 QRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:cd03255 145 QQQRVAIARALANDPKIILADEPT 168
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
523-667 |
4.42e-18 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 85.09 E-value: 4.42e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 523 LSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGkvesiqsyKKIIGfVPQDDIVH-------------GNLT 589
Cdd:COG0411 27 VERGEIVGLIGPNGAGKTTLFNLITGFYR--PTSGRILFDG--------RDITG-LPPHRIARlgiartfqnprlfPELT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 590 VEENL-----------WFSARCRLPADLpKPEKVLV--VERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVM 656
Cdd:COG0411 96 VLENVlvaaharlgrgLLAALLRLPRAR-REEREARerAEELLERVGLADRADEPAGN-----LSYGQQRRLEIARALAT 169
|
170
....*....|.
gi 240256467 657 EPSLLILDEPT 667
Cdd:COG0411 170 EPKLLLLDEPA 180
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
525-719 |
4.97e-18 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 83.88 E-value: 4.97e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 525 PGRVSAVMGPSGAGKTTFLTALTG--KAPGcimtGMILVNGKVeSIQSYKKI--------IGFVPQDDIVHGNLTVEENL 594
Cdd:cd03297 22 NEEVTGIFGASGAGKSTLLRCIAGleKPDG----GTIVLNGTV-LFDSRKKInlppqqrkIGLVFQQYALFPHLNVRENL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 595 WFSarcrLPADLPKPEKVLVvERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSS 674
Cdd:cd03297 97 AFG----LKRKRNREDRISV-DELLDLLGLDHLLNRYPAQ-----LSGGEKQRVALARALAAQPELLLLDEPFSALDRAL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 240256467 675 SQLLLRALrREALEGVNICM--VVHQPSyTLFRMFDDLILLAKGGLI 719
Cdd:cd03297 167 RLQLLPEL-KQIKKNLNIPVifVTHDLS-EAEYLADRIVVMEDGRLQ 211
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
525-667 |
5.77e-18 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 84.26 E-value: 5.77e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 525 PGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGK-VESIQSYKKI---IGFVPQDDIVHGNLTVEENLWFSARC 600
Cdd:COG0410 28 EGEIVALLGRNGAGKTTLLKAISGLLP--PRSGSIRFDGEdITGLPPHRIArlgIGYVPEGRRIFPSLTVEENLLLGAYA 105
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 240256467 601 RLPADLPK--PEKVL-----VVERvieslglqhvRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:COG0410 106 RRDRAEVRadLERVYelfprLKER----------RRQRAGT-----LSGGEQQMLAIGRALMSRPKLLLLDEPS 164
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
495-667 |
1.01e-17 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 83.88 E-value: 1.01e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 495 PMIEVafKDLSITLkGKNKHLmRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTG-KAPgciMTGMILVNGK------VES 567
Cdd:COG1127 4 PMIEV--RNLTKSF-GDRVVL-DGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGlLRP---DSGEILVDGQditglsEKE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 568 IQSYKKIIGFVPQddivHG----NLTVEENLWFSARCRLpaDLPKPEKVLVVERVIESLGLQHVRDSLVGtvEkrgISGG 643
Cdd:COG1127 77 LYELRRRIGMLFQ----GGalfdSLTVFENVAFPLREHT--DLSEAEIRELVLEKLELVGLPGAADKMPS--E---LSGG 145
|
170 180
....*....|....*....|....*.
gi 240256467 644 QRKRVnvGL--EMVMEPSLLILDEPT 667
Cdd:COG1127 146 MRKRV--ALarALALDPEILLYDEPT 169
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
497-734 |
1.44e-17 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 83.32 E-value: 1.44e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 497 IEVafKDLSITLKGKnkHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTG-KAPgciMTGMILVNGK------VESIQ 569
Cdd:cd03261 1 IEL--RGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGlLRP---DSGEVLIDGEdisglsEAELY 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 570 SYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLpaDLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVN 649
Cdd:cd03261 74 RLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPAE-----LSGGMKKRVA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 650 VGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRR--EALeGVNICMVVHQPSyTLFRMFDDLILLAKGGlICYQGPvkk 727
Cdd:cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSlkKEL-GLTSIMVTHDLD-TAFAIADRIAVLYDGK-IVAEGT--- 220
|
....*..
gi 240256467 728 VEEYFSS 734
Cdd:cd03261 221 PEELRAS 227
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
523-666 |
2.24e-17 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 82.13 E-value: 2.24e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 523 LSPGRVSAVMGPSGAGKTTFLTALTG-KAPGcimTGMILVNGkvESIQSYKKIIGFVPQDDIVHGNLTVEENLWFSARCR 601
Cdd:cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGlERPT---SGEVLVDG--EPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQ 101
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 240256467 602 lpaDLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:cd03293 102 ---GVPKAEARERAEELLELVGLSGFENAYPHQ-----LSGGMRQRVALARALAVDPDVLLLDEP 158
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
490-721 |
2.37e-17 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 81.94 E-value: 2.37e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 490 DIRKRPMIEVAFKDLSITLKgknkhlmrcvtgklsPGRVSAVMGPSGAGKTTFLTALTGkapgcIM---TGMILVNGKVE 566
Cdd:cd03269 5 NVTKRFGRVTALDDISFSVE---------------KGEIFGLLGPNGAGKTTTIRMILG-----IIlpdSGEVLFDGKPL 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 567 SIQSYKKIiGFVPQDDIVHGNLTVEENLWFSARCRlpaDLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRK 646
Cdd:cd03269 65 DIAARNRI-GYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRVEE-----LSKGNQQ 135
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 240256467 647 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVVHQPSyTLFRMFDDLILLAKGGLICY 721
Cdd:cd03269 136 KVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLY 209
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
502-719 |
3.32e-17 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 81.15 E-value: 3.32e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 502 KDLSITLKGKNKhLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTG--KAPGcimtGMILVNGKVESIQSYKKIIGFVP 579
Cdd:cd03226 3 ENISFSYKKGTE-ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGliKESS----GSILLNGKPIKAKERRKSIGYVM 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 580 QDdiVHGNL---TVEENLWFSARcRLPADLPKPEKVLvverviESLGL-----QHVRDslvgtvekrgISGGQRKRVNVG 651
Cdd:cd03226 78 QD--VDYQLftdSVREELLLGLK-ELDAGNEQAETVL------KDLDLyalkeRHPLS----------LSGGQKQRLAIA 138
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 240256467 652 LEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVVHQPSYtLFRMFDDLILLAKGGLI 719
Cdd:cd03226 139 AALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEF-LAKVCDRVLLLANGAIV 205
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
519-667 |
3.94e-17 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 83.59 E-value: 3.94e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 519 VTGKLSPGRVSAVMGPSGAGKTTFLTALTgkapgCIMT---GMILVNGK--VESIQSYKKIIGFVPQDDIVHGNLTVEEN 593
Cdd:TIGR01188 12 VNFKVREGEVFGFLGPNGAGKTTTIRMLT-----TLLRptsGTARVAGYdvVREPRKVRRSIGIVPQYASVDEDLTGREN 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 240256467 594 LWFSARCRlpaDLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:TIGR01188 87 LEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVGT-----YSGGMRRRLDIAASLIHQPDVLFLDEPT 152
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
496-667 |
4.27e-17 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 81.64 E-value: 4.27e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 496 MIEvaFKDLSITLKGKNKHLmRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGK-VESIqSYKKI 574
Cdd:COG2884 1 MIR--FENVSKRYPGGREAL-SDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEER--PTSGQVLVNGQdLSRL-KRREI 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 575 ------IGFVPQDdivHG---NLTVEENLWFSARCrlpadLPKPEKVL--VVERVIESLGLQHVRDSLVGTVekrgiSGG 643
Cdd:COG2884 75 pylrrrIGVVFQD---FRllpDRTVYENVALPLRV-----TGKSRKEIrrRVREVLDLVGLSDKAKALPHEL-----SGG 141
|
170 180
....*....|....*....|....
gi 240256467 644 QRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:COG2884 142 EQQRVAIARALVNRPELLLADEPT 165
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
499-666 |
6.21e-17 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 82.06 E-value: 6.21e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 499 VAFKDLSITLKgknkhlmrcvtgklsPGRVSAVMGPSGAGKTTFLTALTG-KAPGcimTGMILVNGKveSIQSYKKIIGF 577
Cdd:COG1116 25 TALDDVSLTVA---------------AGEFVALVGPSGCGKSTLLRLIAGlEKPT---SGEVLVDGK--PVTGPGPDRGV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 578 VPQDDivhgNL----TVEENLWFSARCRlpaDLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLE 653
Cdd:COG1116 85 VFQEP----ALlpwlTVLDNVALGLELR---GVPKAERRERARELLELVGLAGFEDAYPHQ-----LSGGMRQRVAIARA 152
|
170
....*....|...
gi 240256467 654 MVMEPSLLILDEP 666
Cdd:COG1116 153 LANDPEVLLMDEP 165
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
532-666 |
7.80e-17 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 80.38 E-value: 7.80e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 532 MGPSGAGKTTFLTALTGKAPgcIMTGMILVNGK-VESIQSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRlpaDLPKPE 610
Cdd:cd03301 32 LGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRdVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDE 106
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 240256467 611 KVLVVERVIESLGLQHVRDSLVgtvekRGISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:cd03301 107 IDERVREVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRAIVREPKVFLMDEP 157
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
501-667 |
1.87e-16 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 79.09 E-value: 1.87e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 501 FKDLSITLKGKNkhLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCimTGMILVNGKV---ESIQSYKKIIGF 577
Cdd:COG4619 3 LEGLSFRVGGKP--ILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPT--SGEIYLDGKPlsaMPPPEWRRQVAY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 578 VPQD-DIVHGnlTVEENL--WFSARCRLPaDLPKPEKVLvverviESLGLQHvrDSLVGTVEKrgISGGQRKRVNVGLEM 654
Cdd:COG4619 79 VPQEpALWGG--TVRDNLpfPFQLRERKF-DRERALELL------ERLGLPP--DILDKPVER--LSGGERQRLALIRAL 145
|
170
....*....|...
gi 240256467 655 VMEPSLLILDEPT 667
Cdd:COG4619 146 LLQPDVLLLDEPT 158
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
511-666 |
4.71e-16 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 78.74 E-value: 4.71e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 511 KNKHLMRCVTGKLSPGRVSAVMGPSGAGKTT-FLtaltgkapgcIMTGMILVN-GKV----ESIQSY------KKIIGFV 578
Cdd:cd03218 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTtFY----------MIVGLVKPDsGKIlldgQDITKLpmhkraRLGIGYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 579 PQDDIVHGNLTVEENLwfsaRCRLP-ADLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVME 657
Cdd:cd03218 81 PQEASIFRKLTVEENI----LAVLEiRGLSKKEREEKLEELLEEFHITHLRKSKASS-----LSGGERRRVEIARALATN 151
|
....*....
gi 240256467 658 PSLLILDEP 666
Cdd:cd03218 152 PKFLLLDEP 160
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
525-667 |
6.33e-16 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 77.64 E-value: 6.33e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 525 PGRVSAVMGPSGAGKTTFLTALTG--KAPGcimtGMILVNGK--VESIQSYKKIiGFVPQDDIVHGNLTVEENLWFSARC 600
Cdd:cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGliKPDS----GEITFDGKsyQKNIEALRRI-GALIEAPGFYPNLTARENLRLLARL 99
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 240256467 601 RlpaDLPKPEkvlvVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:cd03268 100 L---GIRKKR----IDEVLDVVGLKDSAKKKVKG-----FSLGMKQRLGIALALLGNPDLLILDEPT 154
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
497-667 |
6.58e-16 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 82.50 E-value: 6.58e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 497 IEVAFKDLSITLkGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGciMTGMILVNG---KVESIQSYKK 573
Cdd:COG4988 335 PSIELEDVSFSY-PGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPP--YSGSILINGvdlSDLDPASWRR 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 574 IIGFVPQDD-IVHGnlTVEENLWFSARCRLPADLpkpEKVLV---VERVIESL--GLqhvrDSLVGtvEK-RGISGGQRK 646
Cdd:COG4988 412 QIAWVPQNPyLFAG--TIRENLRLGRPDASDEEL---EAALEaagLDEFVAALpdGL----DTPLG--EGgRGLSGGQAQ 480
|
170 180
....*....|....*....|.
gi 240256467 647 RVNVGLEMVMEPSLLILDEPT 667
Cdd:COG4988 481 RLALARALLRDAPLLLLDEPT 501
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
495-666 |
1.08e-15 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 80.14 E-value: 1.08e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 495 PMIEVAFK----DLSITlkgknkhlmrcVTGKLSPGRVSAVMGPSGAGKTTFLTALTG--KAPgcimTGMILVNGKV--- 565
Cdd:COG4148 1 MMLEVDFRlrrgGFTLD-----------VDFTLPGRGVTALFGPSGSGKTTLLRAIAGleRPD----SGRIRLGGEVlqd 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 566 ----ESIQSYKKIIGFVPQDDIVHGNLTVEENLWFSARcRLPADLPKPEkvlvVERVIESLGLQHVRDSLVGTvekrgIS 641
Cdd:COG4148 66 sargIFLPPHRRRIGYVFQEARLFPHLSVRGNLLYGRK-RAPRAERRIS----FDEVVELLGIGHLLDRRPAT-----LS 135
|
170 180
....*....|....*....|....*
gi 240256467 642 GGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:COG4148 136 GGERQRVAIGRALLSSPRLLLMDEP 160
|
|
| anch_rpt_ABC |
TIGR03771 |
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ... |
522-666 |
1.11e-15 |
|
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 163483 [Multi-domain] Cd Length: 223 Bit Score: 77.58 E-value: 1.11e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 522 KLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGKveSIQSYKKIIGFVPQDDIVHGNLTVE-ENLWFSARC 600
Cdd:TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGA--SPGKGWRHIGYVPQRHEFAWDFPISvAHTVMSGRT 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 240256467 601 RLPADLPKPEKV--LVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:TIGR03771 78 GHIGWLRRPCVAdfAAVRDALRRVGLTELADRPVGE-----LSGGQRQRVLVARALATRPSVLLLDEP 140
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
522-666 |
1.60e-15 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 77.38 E-value: 1.60e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 522 KLSPGRVSAVMGPSGAGKTTfltaltgkapgC--IMTGMILVN-GKV----ESIQSY------KKIIGFVPQDDIVHGNL 588
Cdd:COG1137 25 EVNQGEIVGLLGPNGAGKTT-----------TfyMIVGLVKPDsGRIfldgEDITHLpmhkraRLGIGYLPQEASIFRKL 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 240256467 589 TVEENLwfsaRCRL-PADLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:COG1137 94 TVEDNI----LAVLeLRKLSKKEREERLEELLEEFGITHLRKSKAYS-----LSGGERRRVEIARALATNPKFILLDEP 163
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
496-667 |
1.68e-15 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 76.78 E-value: 1.68e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 496 MIEVafKDLSITLKGKNKHLmRCVTG---KLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGKV-----ES 567
Cdd:cd03257 1 LLEV--KNLSVSFPTGGGSV-KALDDvsfSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDllklsRR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 568 IQSY-KKIIGFVPQDDIVHGN--LTVEENLWFSARCRLPADlpKPEKvlvvERVIESLGLQHVrdSLVGTVEKR---GIS 641
Cdd:cd03257 76 LRKIrRKEIQMVFQDPMSSLNprMTIGEQIAEPLRIHGKLS--KKEA----RKEAVLLLLVGV--GLPEEVLNRyphELS 147
|
170 180
....*....|....*....|....*.
gi 240256467 642 GGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:cd03257 148 GGQRQRVAIARALALNPKLLIADEPT 173
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
519-667 |
2.07e-15 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 76.29 E-value: 2.07e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 519 VTGKLSPGRVSAVMGPSGAGKTTFLTALTGKA-PgciMTGMILVNGKVES------IQSYKKIIGFVPQDDIVHGNLTVE 591
Cdd:cd03292 20 INISISAGEFVFLVGPSGAGKSTLLKLIYKEElP---TSGTIRVNGQDVSdlrgraIPYLRRKIGVVFQDFRLLPDRNVY 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 240256467 592 ENLWFSARC--RLPADLPKPekvlvVERVIESLGLQHVRDSLvgtveKRGISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:cd03292 97 ENVAFALEVtgVPPREIRKR-----VPAALELVGLSHKHRAL-----PAELSGGEQQRVAIARAIVNSPTILIADEPT 164
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
496-728 |
3.98e-15 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 76.69 E-value: 3.98e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 496 MIEVafKDLSITLKGKNkhLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCimTGMILVNGKveSIQSYK--- 572
Cdd:COG4559 1 MLEA--ENLSVRLGGRT--LLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPS--SGEVRLNGR--PLAAWSpwe 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 573 --KIIGFVPQDDIVHGNLTVEEnlwFSARCRLPADLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVN- 649
Cdd:COG4559 73 laRRRAVLPQHSSLAFPFTVEE---VVALGRAPHGSSAAQDRQIVREALALVGLAHLAGRSYQT-----LSGGEQQRVQl 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 650 ------VGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVVHQPSytLFRMFDDLILLAKGGLICYQG 723
Cdd:COG4559 145 arvlaqLWEPVDGGPRWLFLDEPTSALDLAHQHAVLRLARQLARRGGGVVAVLHDLN--LAAQYADRILLLHQGRLVAQG 222
|
....*
gi 240256467 724 PVKKV 728
Cdd:COG4559 223 TPEEV 227
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
496-667 |
4.15e-15 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 75.48 E-value: 4.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 496 MIEV-----AFKDLSitlkgKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGK-APGcimTGMILVNG--KVES 567
Cdd:cd03266 1 MITAdaltkRFRDVK-----KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLlEPD---AGFATVDGfdVVKE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 568 IQSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRlpaDLPKPEKVLVVERVIESLGLQHVRDSLVGtvekrGISGGQRKR 647
Cdd:cd03266 73 PAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQK 144
|
170 180
....*....|....*....|
gi 240256467 648 VNVGLEMVMEPSLLILDEPT 667
Cdd:cd03266 145 VAIARALVHDPPVLLLDEPT 164
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
512-667 |
4.49e-15 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 75.68 E-value: 4.49e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 512 NKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTG---KAPGCIMTGMILVNGKV-----ESIQSYKKIIGFVPQddi 583
Cdd:cd03260 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRlndLIPGAPDEGEVLLDGKDiydldVDVLELRRRVGMVFQ--- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 584 vHGNL---TVEENLWFSARCRLpaDLPKPEKVLVVERVIESLGL-QHVRDSLVGtvekRGISGGQRKRVNVGLEMVMEPS 659
Cdd:cd03260 89 -KPNPfpgSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALwDEVKDRLHA----LGLSGGQQQRLCLARALANEPE 161
|
....*...
gi 240256467 660 LLILDEPT 667
Cdd:cd03260 162 VLLLDEPT 169
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
524-666 |
4.87e-15 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 77.84 E-value: 4.87e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 524 SPGR-VSAVMGPSGAGKTTFLTALTG--KAPGcimtGMILVNGKV--ESIQS-----YKKIIGFVPQDDIVHGNLTVEEN 593
Cdd:TIGR02142 20 LPGQgVTAIFGRSGSGKTTLIRLIAGltRPDE----GEIVLNGRTlfDSRKGiflppEKRRIGYVFQEARLFPHLSVRGN 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 240256467 594 LWFS-ARCRlpadlpKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:TIGR02142 96 LRYGmKRAR------PSERRISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEP 158
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
527-667 |
5.27e-15 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 80.44 E-value: 5.27e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 527 RVSAVMGPSGAGKTTFLTALTGKAPGciMTGMILVNGK-VE-SIQSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLPA 604
Cdd:TIGR01257 957 QITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGGKdIEtNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRS 1034
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 240256467 605 dlpKPEKVLVVERVIESLGLQHVRDSlvgtvEKRGISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:TIGR01257 1035 ---WEEAQLEMEAMLEDTGLHHKRNE-----EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPT 1089
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
498-667 |
1.25e-14 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 78.72 E-value: 1.25e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 498 EVAFKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTG-KAPgciMTGMILVNGK-VESI--QSYKK 573
Cdd:COG2274 473 DIELENVSFRYPGDSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGlYEP---TSGRILIDGIdLRQIdpASLRR 549
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 574 IIGFVPQDD-IVHGnlTVEENLWFSArcrlpADLPKPE-----KVLVVERVIESL--GLqhvrDSLVGtvEK-RGISGGQ 644
Cdd:COG2274 550 QIGVVLQDVfLFSG--TIRENITLGD-----PDATDEEiieaaRLAGLHDFIEALpmGY----DTVVG--EGgSNLSGGQ 616
|
170 180
....*....|....*....|...
gi 240256467 645 RKRVNVGLEMVMEPSLLILDEPT 667
Cdd:COG2274 617 RQRLAIARALLRNPRILILDEAT 639
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
519-699 |
1.28e-14 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 73.42 E-value: 1.28e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 519 VTGKLSPGRVSAVMGPSGAGKTTFLTALTG-KAPgciMTGMILVNGKVEsiqsykkiIGFVPQ----DDIVhgNLTVEE- 592
Cdd:NF040873 11 VDLTIPAGSLTAVVGPNGSGKSTLLKVLAGvLRP---TSGTVRRAGGAR--------VAYVPQrsevPDSL--PLTVRDl 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 593 ---NLWfsaRCRLPADLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEPTSG 669
Cdd:NF040873 78 vamGRW---ARRGLWRRLTRDDRAAVDDALERVGLADLAGRQLGE-----LSGGQRQRALLAQGLAQEADLLLLDEPTTG 149
|
170 180 190
....*....|....*....|....*....|
gi 240256467 670 LDSSSSQLLLRALRREALEGVNICMVVHQP 699
Cdd:NF040873 150 LDAESRERIIALLAEEHARGATVVVVTHDL 179
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
496-667 |
1.45e-14 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 74.84 E-value: 1.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 496 MIEVafKDLSIT--LKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGciMTGMILVNGK---VESIQS 570
Cdd:COG1124 1 MLEV--RNLSVSygQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERP--WSGEVTFDGRpvtRRRRKA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 571 YKKIIGFVPQD--DIVHGNLTVEENLWFSARC-RLPADLPKpekvlvVERVIESLGL-QHVRDSLVGTVekrgiSGGQRK 646
Cdd:COG1124 77 FRRRVQMVFQDpyASLHPRHTVDRILAEPLRIhGLPDREER------IAELLEQVGLpPSFLDRYPHQL-----SGGQRQ 145
|
170 180
....*....|....*....|.
gi 240256467 647 RVNVGLEMVMEPSLLILDEPT 667
Cdd:COG1124 146 RVAIARALILEPELLLLDEPT 166
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
499-666 |
2.42e-14 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 75.90 E-value: 2.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 499 VAFKDLSITLKgknkhlmrcvtgklsPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGK-VESIQSYKKIIGF 577
Cdd:COG3842 19 TALDDVSLSIE---------------PGEFVALLGPSGCGKTTLLRMIAGFET--PDSGRILLDGRdVTGLPPEKRNVGM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 578 VPQDDIVHGNLTVEENLWFSARCRlpaDLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVME 657
Cdd:COG3842 82 VFQDYALFPHLTVAENVAFGLRMR---GVPKAEIRARVAELLELVGLEGLADRYPHQ-----LSGGQQQRVALARALAPE 153
|
....*....
gi 240256467 658 PSLLILDEP 666
Cdd:COG3842 154 PRVLLLDEP 162
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
525-666 |
3.00e-14 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 73.53 E-value: 3.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 525 PGRVSAVMGPSGAGKTTFLTALTG-KAPGcimTGMILVNGK-VESIQSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRL 602
Cdd:cd03296 27 SGELVALLGPSGSGKTTLLRLIAGlERPD---SGTILFGGEdATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKP 103
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 240256467 603 PADlpKPEKVLVVERVIESLGLQHVrDSLvgtvEKR---GISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:cd03296 104 RSE--RPPEAEIRAKVHELLKLVQL-DWL----ADRypaQLSGGQRQRVALARALAVEPKVLLLDEP 163
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
494-667 |
3.73e-14 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 76.48 E-value: 3.73e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 494 RPMIEVafKDLSITLKGKNKHLMRCVTG---KLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGK------ 564
Cdd:COG1123 258 EPLLEV--RNLSKRYPVRGKGGVRAVDDvslTLRRGETLGLVGESGSGKSTLARLLLGLLR--PTSGSILFDGKdltkls 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 565 VESIQSYKKIIGFVPQDdiVHGNL----TVEENLWFSARCRlpADLPKPEKVLVVERVIESLGLQ-HVRDSLVGTvekrg 639
Cdd:COG1123 334 RRSLRELRRRVQMVFQD--PYSSLnprmTVGDIIAEPLRLH--GLLSRAERRERVAELLERVGLPpDLADRYPHE----- 404
|
170 180
....*....|....*....|....*...
gi 240256467 640 ISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:COG1123 405 LSGGQRQRVAIARALALEPKLLILDEPT 432
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
512-667 |
4.01e-14 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 72.56 E-value: 4.01e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 512 NKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGKV-----ESIQSYKKIIGFVPQDDIVHG 586
Cdd:cd03262 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKltddkKNINELRQKVGMVFQQFNLFP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 587 NLTVEENLWFSARCRLpaDLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:cd03262 90 HLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYPAQ-----LSGGQQQRVAIARALAMNPKVMLFDEP 162
|
.
gi 240256467 667 T 667
Cdd:cd03262 163 T 163
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
501-716 |
6.12e-14 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 70.35 E-value: 6.12e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 501 FKDLSITLKGKnkHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCimTGMILVNGK---VESIQSYKKIIGF 577
Cdd:cd00267 2 IENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT--SGEILIDGKdiaKLPLEELRRRIGY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 578 VPQddivhgnltveenlwfsarcrlpadlpkpekvlvvervieslglqhvrdslvgtvekrgISGGQRKRVNVGLEMVME 657
Cdd:cd00267 78 VPQ-----------------------------------------------------------LSGGQRQRVALARALLLN 98
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 240256467 658 PSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVVHQPSYTLfRMFDDLILLAKG 716
Cdd:cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE-LAADRVIVLKDG 156
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
501-667 |
6.25e-14 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 71.06 E-value: 6.25e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 501 FKDLSITLKGKnkHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGKV-----ESIQSYKKII 575
Cdd:cd03229 3 LKNVSKRYGQK--TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDltdleDELPPLRRRI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 576 GFVPQDDIVHGNLTVEENLwfsarcrlpadlpkpekvlvvervieSLGLqhvrdslvgtvekrgiSGGQRKRVNVGLEMV 655
Cdd:cd03229 79 GMVFQDFALFPHLTVLENI--------------------------ALGL----------------SGGQQQRVALARALA 116
|
170
....*....|..
gi 240256467 656 MEPSLLILDEPT 667
Cdd:cd03229 117 MDPDVLLLDEPT 128
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
526-723 |
7.54e-14 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 71.76 E-value: 7.54e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 526 GRVSAVMGPSGAGKTTFLTALTG-KAPgciMTGMILVNG-KVESIQSYKKIIGFVPQDDIVHGNLTVEEN--LWFSARCR 601
Cdd:cd03298 24 GEITAIVGPSGSGKSTLLNLIAGfETP---QSGRVLINGvDVTAAPPADRPVSMLFQENNLFAHLTVEQNvgLGLSPGLK 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 602 LpadlpKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEPTSG---LDSSSSQLL 678
Cdd:cd03298 101 L-----TAEDRQAIEVALARVGLAGLEKRLPGE-----LSGGERQRVALARVLVRDKPVLLLDEPFAAldpALRAEMLDL 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 240256467 679 LRALRREalEGVNICMVVHQPSYTLfRMFDDLILLAKgGLICYQG 723
Cdd:cd03298 171 VLDLHAE--TKMTVLMVTHQPEDAK-RLAQRVVFLDN-GRIAAQG 211
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
486-667 |
7.97e-14 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 75.40 E-value: 7.97e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 486 ANDIDIRKRPMIEVAFKDLSITLKGKNKHLmRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGkV 565
Cdd:TIGR02857 309 AGKAPVTAAPASSLEFSGVSVAYPGRRPAL-RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD--PTEGSIAVNG-V 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 566 E----SIQSYKKIIGFVPQDD-IVHGnlTVEENLWFSARCRLPADlpkpekvlvVERVIESLGLQHVRDSLVGTVEK--- 637
Cdd:TIGR02857 385 PladaDADSWRDQIAWVPQHPfLFAG--TIAENIRLARPDASDAE---------IREALERAGLDEFVAALPQGLDTpig 453
|
170 180 190
....*....|....*....|....*....|...
gi 240256467 638 ---RGISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:TIGR02857 454 eggAGLSGGQAQRLALARAFLRDAPLLLLDEPT 486
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
499-667 |
1.09e-13 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 70.10 E-value: 1.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 499 VAFKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNG---KVESIQSYKKII 575
Cdd:cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGvdlRDLDLESLRKNI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 576 GFVPQDDIVHgNLTVEENLwfsarcrlpadlpkpekvlvvervieslglqhvrdslvgtvekrgISGGQRKRVNVGLEMV 655
Cdd:cd03228 79 AYVPQDPFLF-SGTIRENI---------------------------------------------LSGGQRQRIAIARALL 112
|
170
....*....|..
gi 240256467 656 MEPSLLILDEPT 667
Cdd:cd03228 113 RDPPILILDEAT 124
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
525-667 |
1.22e-13 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 76.21 E-value: 1.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 525 PGRVSAVMGPSGAGKTTFLTALTGKApgCIMTGMILVNGK--VESIQSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRl 602
Cdd:TIGR01257 1964 PGECFGLLGVNGAGKTTTFKMLTGDT--TVTSGDATVAGKsiLTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR- 2040
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 240256467 603 paDLPKPEKVLVVERVIESLGLQHVRDSLVGTVekrgiSGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:TIGR01257 2041 --GVPAEEIEKVANWSIQSLGLSLYADRLAGTY-----SGGNKRKLSTAIALIGCPPLVLLDEPT 2098
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
494-666 |
1.37e-13 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 73.72 E-value: 1.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 494 RPMIEVafKDLSITLKGKnkHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTG-KAPgciMTGMILVNGK-VESIQSY 571
Cdd:PRK11607 17 TPLLEI--RNLTKSFDGQ--HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGfEQP---TAGQIMLDGVdLSHVPPY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 572 KKIIGFVPQDDIVHGNLTVEENLWFSarcrLPAD-LPKPEkvlVVERVIESLGLQHVRDslvgtVEKRG---ISGGQRKR 647
Cdd:PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFG----LKQDkLPKAE---IASRVNEMLGLVHMQE-----FAKRKphqLSGGQRQR 157
|
170
....*....|....*....
gi 240256467 648 VNVGLEMVMEPSLLILDEP 666
Cdd:PRK11607 158 VALARSLAKRPKLLLLDEP 176
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
501-697 |
1.43e-13 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 70.53 E-value: 1.43e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 501 FKDLSITLKGKNKHLMRcvtgklspGRVSAVMGPSGAGKTTFLTALTGK-APgciMTGMILVNGKV-----ESIQSYKKI 574
Cdd:TIGR01166 1 YPGGPEVLKGLNFAAER--------GEVLALLGANGAGKSTLLLHLNGLlRP---QSGAVLIDGEPldysrKGLLERRQR 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 575 IGFV---PQDDIVHGnlTVEENLWFSARcrlPADLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVG 651
Cdd:TIGR01166 70 VGLVfqdPDDQLFAA--DVDQDVAFGPL---NLGLSEAEVERRVREALTAVGASGLRERPTHC-----LSGGEKKRVAIA 139
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 240256467 652 LEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVVH 697
Cdd:TIGR01166 140 GAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTH 185
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
491-666 |
1.82e-13 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 71.11 E-value: 1.82e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 491 IRKRPMIEVAFKDLSITLKgknkhlmrcvtgklsPGRVSAVMGPSGAGKTTFLTALTG-KAPGcimTGMILVNGK-VESI 568
Cdd:cd03300 6 VSKFYGGFVALDGVSLDIK---------------EGEFFTLLGPSGCGKTTLLRLIAGfETPT---SGEILLDGKdITNL 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 569 QSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRlpadlpKPEKVLVVERVIESLGLqhVRdslVGTVEKRGI---SGGQR 645
Cdd:cd03300 68 PPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK------KLPKAEIKERVAEALDL--VQ---LEGYANRKPsqlSGGQQ 136
|
170 180
....*....|....*....|.
gi 240256467 646 KRVNVGLEMVMEPSLLILDEP 666
Cdd:cd03300 137 QRVAIARALVNEPKVLLLDEP 157
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
499-667 |
2.81e-13 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 70.72 E-value: 2.81e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 499 VAFKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTfLTALtgkapgcIM------TGMILVNG---KVESIQ 569
Cdd:cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKST-LVNL-------IPrfydvdSGRILIDGhdvRDYTLA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 570 SYKKIIGFVPQDDIVHgNLTVEENLWFSARCRLPADLPKPEKVLVVERVIESLGLQHvrDSLVGtveKRGI--SGGQRKR 647
Cdd:cd03251 73 SLRRQIGLVSQDVFLF-NDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGY--DTVIG---ERGVklSGGQRQR 146
|
170 180
....*....|....*....|
gi 240256467 648 VNVGLEMVMEPSLLILDEPT 667
Cdd:cd03251 147 IAIARALLKDPPILILDEAT 166
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
501-667 |
3.56e-13 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 73.55 E-value: 3.56e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 501 FKDLSITLKGKNKHLmRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGciMTGMILVNGkvESIQSY-----KKII 575
Cdd:TIGR02868 337 LRDLSAGYPGAPPVL-DGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP--LQGEVTLDG--VPVSSLdqdevRRRV 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 576 GFVPQDDIVHGNlTVEENLWFSArcrlpADLPKPEKVLVVERV-----IESL--GLqhvrDSLVGTVEKRgISGGQRKRV 648
Cdd:TIGR02868 412 SVCAQDAHLFDT-TVRENLRLAR-----PDATDEELWAALERVgladwLRALpdGL----DTVLGEGGAR-LSGGERQRL 480
|
170
....*....|....*....
gi 240256467 649 NVGLEMVMEPSLLILDEPT 667
Cdd:TIGR02868 481 ALARALLADAPILLLDEPT 499
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
526-728 |
5.41e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 70.65 E-value: 5.41e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 526 GRVSAVMGPSGAGKTTFLTALTGkapgcIM---TGMILVNGK-----VESIQSYKKIIGFVPQD-DIVHGNLTVEENLWF 596
Cdd:PRK13636 32 GEVTAILGGNGAGKSTLFQNLNG-----ILkpsSGRILFDGKpidysRKGLMKLRESVGMVFQDpDNQLFSASVYQDVSF 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 597 SArcrLPADLPKPEKVLVVERVIESLGLQHVRDSlvgtvEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQ 676
Cdd:PRK13636 107 GA---VNLKLPEDEVRKRVDNALKRTGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 240256467 677 LLLRALrREALEGVNICMVVHQPSYTLFRMFDDLILLAKGGLICYQGPVKKV 728
Cdd:PRK13636 179 EIMKLL-VEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 229
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
497-718 |
6.62e-13 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 68.01 E-value: 6.62e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 497 IEVafKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGK-VESIQS--YKK 573
Cdd:cd03246 1 LEV--ENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGAdISQWDPneLGD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 574 IIGFVPQDDIVhgnltveenlwFSarcrlpadlpkpekvlvvervieslglqhvrdslvGTVEKRGISGGQRKRVNVGLE 653
Cdd:cd03246 77 HVGYLPQDDEL-----------FS-----------------------------------GSIAENILSGGQRQRLGLARA 110
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 240256467 654 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVVHQPSytLFRMFDDLILLAKGGL 718
Cdd:cd03246 111 LYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE--TLASADRILVLEDGRV 173
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
511-666 |
6.77e-13 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 69.54 E-value: 6.77e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 511 KNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGciMTGMILVNGKVESI----QSYKKIIGFVPQDDIVHG 586
Cdd:PRK10895 14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR--DAGNIIIDDEDISLlplhARARRGIGYLPQEASIFR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 587 NLTVEENLWfsARCRLPADLPKPEKVLVVERVIESLGLQHVRDSLvgtveKRGISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:PRK10895 92 RLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGGERRRVEIARALAANPKFILLDEP 164
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
499-667 |
9.01e-13 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 72.49 E-value: 9.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 499 VAFKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGKveSIQSYK-----K 573
Cdd:COG4987 334 LELEDVSFRYPGAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLD--PQSGSITLGGV--DLRDLDeddlrR 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 574 IIGFVPQD-DIVHGnlTVEENLwfsarcRLPADLPKPEKVL-VVERV-----IESL--GLqhvrDSLVGtvEK-RGISGG 643
Cdd:COG4987 410 RIAVVPQRpHLFDT--TLRENL------RLARPDATDEELWaALERVglgdwLAALpdGL----DTWLG--EGgRRLSGG 475
|
170 180
....*....|....*....|....*.
gi 240256467 644 QRKRVnvGLEMVM--EPSLLILDEPT 667
Cdd:COG4987 476 ERRRL--ALARALlrDAPILLLDEPT 499
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
495-667 |
9.40e-13 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 69.42 E-value: 9.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 495 PMIEVafKDLSITLKGKnkHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGK-APGcimTGMILVNGKveSIQSYK- 572
Cdd:PRK13548 1 AMLEA--RNLSVRLGGR--TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGElSPD---SGEVRLNGR--PLADWSp 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 573 ----KIIGFVPQddivHGNL----TVEENLWFSarcRLPADLPKPEKVLVVERVIESLGLQHVRDSLVgtvekRGISGGQ 644
Cdd:PRK13548 72 aelaRRRAVLPQ----HSSLsfpfTVEEVVAMG---RAPHGLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139
|
170 180 190
....*....|....*....|....*....|.
gi 240256467 645 RKRVNvgLEMVM--------EPSLLILDEPT 667
Cdd:PRK13548 140 QQRVQ--LARVLaqlwepdgPPRWLLLDEPT 168
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
505-667 |
9.52e-13 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 69.63 E-value: 9.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 505 SITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGkapgcIMT---GMILVNGkvESIQSY--KKI---IG 576
Cdd:PRK10253 12 QLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSR-----LMTpahGHVWLDG--EHIQHYasKEVarrIG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 577 FVPQDDIVHGNLTVEEnlwFSARCRLPADlP-----KPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVG 651
Cdd:PRK10253 85 LLAQNATTPGDITVQE---LVARGRYPHQ-PlftrwRKEDEEAVTKAMQATGITHLADQSVDT-----LSGGQRQRAWIA 155
|
170
....*....|....*.
gi 240256467 652 LEMVMEPSLLILDEPT 667
Cdd:PRK10253 156 MVLAQETAIMLLDEPT 171
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
522-727 |
1.30e-12 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 68.63 E-value: 1.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 522 KLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGK-VESIQSYKKIIGFVPQDDIVHGNLTVEEN--LWFSA 598
Cdd:COG3840 21 TIAAGERVAILGPSGAGKSTLLNLIAGFLP--PDSGRILWNGQdLTALPPAERPVSMLFQENNLFPHLTVAQNigLGLRP 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 599 RCRLPADlpkpEKVLvVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEPtsgldssssqll 678
Cdd:COG3840 99 GLKLTAE----QRAQ-VEQALERVGLAGLLDRLPGQ-----LSGGQRQRVALARCLVRKRPILLLDEPfsal-------- 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 240256467 679 lralRREALEGVN-IC--------MVVHQPSYTLfRMFDDLILLAKGGlICYQGPVKK 727
Cdd:COG3840 161 dpalRQEMLDLVDeLCrergltvlMVTHDPEDAA-RIADRVLLVADGR-IAADGPTAA 216
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
502-667 |
1.41e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 69.45 E-value: 1.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 502 KDLSITLKGkNKHLMRCVTgkLSPGRVS--AVMGPSGAGKTTFLTALTGkapgcIMT---GMILVNGK---VESIQSYKK 573
Cdd:PRK13652 7 RDLCYSYSG-SKEALNNIN--FIAPRNSriAVIGPNGAGKSTLFRHFNG-----ILKptsGSVLIRGEpitKENIREVRK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 574 IIGFVPQ--DDIVHGNlTVEENLWFSarcrlPADLPKPEKVLV--VERVIESLGLQHVRDSLvgtveKRGISGGQRKRVN 649
Cdd:PRK13652 79 FVGLVFQnpDDQIFSP-TVEQDIAFG-----PINLGLDEETVAhrVSSALHMLGLEELRDRV-----PHHLSGGEKKRVA 147
|
170
....*....|....*...
gi 240256467 650 VGLEMVMEPSLLILDEPT 667
Cdd:PRK13652 148 IAGVIAMEPQVLVLDEPT 165
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
496-728 |
1.53e-12 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 68.62 E-value: 1.53e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 496 MIEVafKDLSITLKGKNkhLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTA---LTGKAPGCIMTGMILVNGKVE------ 566
Cdd:PRK11264 3 AIEV--KNLVKKFHGQT--VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCinlLEQPEAGTIRVGDITIDTARSlsqqkg 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 567 SIQSYKKIIGFVPQ-----------DDIVHGNLTVEENlwfsarcrlpadlPKPEKVLVVERVIESLGLQHVRDSLvgtv 635
Cdd:PRK11264 79 LIRQLRQHVGFVFQnfnlfphrtvlENIIEGPVIVKGE-------------PKEEATARARELLAKVGLAGKETSY---- 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 636 eKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVVHQPSYTlfRMFDDLILLAK 715
Cdd:PRK11264 142 -PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFA--RDVADRAIFMD 218
|
250
....*....|...
gi 240256467 716 GGLICYQGPVKKV 728
Cdd:PRK11264 219 QGRIVEQGPAKAL 231
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
495-667 |
1.61e-12 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 68.54 E-value: 1.61e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 495 PMIEVafKDLSITLKGKNKHLmRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGKVESIQSYKKI 574
Cdd:COG3638 1 PMLEL--RNLSKRYPGGTPAL-DDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGEILVDGQDVTALRGRAL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 575 ------IGFVPQD-DIVhGNLTVEEN----------LWFSARCRLPADlpkpEKVLVVErVIESLGLQHVRDSLVGTvek 637
Cdd:COG3638 76 rrlrrrIGMIFQQfNLV-PRLSVLTNvlagrlgrtsTWRSLLGLFPPE----DRERALE-ALERVGLADKAYQRADQ--- 146
|
170 180 190
....*....|....*....|....*....|
gi 240256467 638 rgISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:COG3638 147 --LSGGQQQRVAIARALVQEPKLILADEPV 174
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
530-666 |
1.65e-12 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 70.10 E-value: 1.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 530 AVMGPSGAGKTTFLTALTG--KapgcIMTGMILVNGK-VESIQSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRlpaDL 606
Cdd:COG3839 33 VLLGPSGCGKSTLLRMIAGleD----PTSGEILIGGRdVTDLPPKDRNIAMVFQSYALYPHMTVYENIAFPLKLR---KV 105
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 607 PKPEKVLVVERVIESLGLQHVRDSLVgtvekRGISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:COG3839 106 PKAEIDRRVREAAELLGLEDLLDRKP-----KQLSGGQRQRVALGRALVREPKVFLLDEP 160
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
525-666 |
1.71e-12 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 70.18 E-value: 1.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 525 PGRVSAVMGPSGAGKTTFLtaltgkapGCI------MTGMILVNGKVESIQ--SYKKIIGFVPQDDIVHGNLTVEENLWF 596
Cdd:COG1118 27 SGELVALLGPSGSGKTTLL--------RIIagletpDSGRIVLNGRDLFTNlpPRERRVGFVFQHYALFPHMTVAENIAF 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 240256467 597 SARCRLPadlPKPEKVLVVERVIESLGLQHvrdslvgtVEKR---GISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:COG1118 99 GLRVRPP---SKAEIRARVEELLELVQLEG--------LADRypsQLSGGQRQRVALARALAVEPEVLLLDEP 160
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
500-667 |
2.05e-12 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 71.35 E-value: 2.05e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 500 AFKDLSITLKgknkhlmrcvtgklsPGRVSAVMGPSGAGKTTfLTALtgkapgcIM------TGMILVNGK-VESI--QS 570
Cdd:COG1132 355 VLKDISLTIP---------------PGETVALVGPSGSGKST-LVNL-------LLrfydptSGRILIDGVdIRDLtlES 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 571 YKKIIGFVPQDDIV-HGnlTVEENLWFSarcRLPADLPKPEKVLV---VERVIESL--GLqhvrDSLVGtveKRGI--SG 642
Cdd:COG1132 412 LRRQIGVVPQDTFLfSG--TIRENIRYG---RPDATDEEVEEAAKaaqAHEFIEALpdGY----DTVVG---ERGVnlSG 479
|
170 180
....*....|....*....|....*
gi 240256467 643 GQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:COG1132 480 GQRQRIAIARALLKDPPILILDEAT 504
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
523-667 |
3.04e-12 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 66.61 E-value: 3.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 523 LSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGKVESIQ--SYKKIIGFVPQDDIVHGNLTVEENLWFSARC 600
Cdd:TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTPLAEQrdEPHENILYLGHLPGLKPELSALENLHFWAAI 100
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 240256467 601 RLPADLpkpekvlVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:TIGR01189 101 HGGAQR-------TIEDALAAVGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRRPLWILDEPT 155
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
498-719 |
3.76e-12 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 66.84 E-value: 3.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 498 EVAFKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTG--KApgciMTGMILVNGKveSIQSY---- 571
Cdd:cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGlyKP----TSGSVLLDGT--DIRQLdpad 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 572 -KKIIGFVPQD-DIVHGnlTVEENLWFSArcrLPADlpkPEKVLvveRVIESLGL-----QHVR--DSLVGtvEK-RGIS 641
Cdd:cd03245 76 lRRNIGYVPQDvTLFYG--TLRDNITLGA---PLAD---DERIL---RAAELAGVtdfvnKHPNglDLQIG--ERgRGLS 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 240256467 642 GGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREaLEGVNICMVVHQPSytLFRMFDDLILLAKGGLI 719
Cdd:cd03245 143 GGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQL-LGDKTLIIITHRPS--LLDLVDRIIVMDSGRIV 217
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
530-667 |
5.94e-12 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 67.03 E-value: 5.94e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 530 AVMGPSGAGKTTFLTALTG---KAPGCIMTgmILvnGKV---ESIQSYKKIIGFV-P--QDDIvHGNLTVEE-------- 592
Cdd:COG1119 33 AILGPNGAGKSTLLSLITGdlpPTYGNDVR--LF--GERrggEDVWELRKRIGLVsPalQLRF-PRDETVLDvvlsgffd 107
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 240256467 593 --NLWfsarcrlpaDLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:COG1119 108 siGLY---------REPTDEQRERARELLELLGLAHLADRPFGT-----LSQGEQRRVLIARALVKDPELLILDEPT 170
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
513-716 |
6.04e-12 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 66.42 E-value: 6.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 513 KHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTG-KAPgciMTGMILVNGK-VESIQSYKKIIGFVPQDDIVHGNLTV 590
Cdd:TIGR01277 11 EHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGfIEP---ASGSIKVNDQsHTGLAPYQRPVSMLFQENNLFAHLTV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 591 EENLWFSARCRLPADLPKPEKVlvvERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEPTSGL 670
Cdd:TIGR01277 88 RQNIGLGLHPGLKLNAEQQEKV---VDAAQQVGIADYLDRLPEQ-----LSGGQRQRVALARCLVRPNPILLLDEPFSAL 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 240256467 671 DSSSSQLLLRALRREALE-GVNICMVVHQPSyTLFRMFDDLILLAKG 716
Cdd:TIGR01277 160 DPLLREEMLALVKQLCSErQRTLLMVTHHLS-DARAIASQIAVVSQG 205
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
531-666 |
6.06e-12 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 68.29 E-value: 6.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 531 VMGPSGAGKTTFLTALTG-KAPGcimTGMILVNGK-VESIQSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRlpaDLPK 608
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGfEQPD---SGSIMLDGEdVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPR 74
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 240256467 609 PEkvlVVERVIESLGLQHVRDslVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:TIGR01187 75 AE---IKPRVLEALRLVQLEE--FADRKPHQLSGGQQQRVALARALVFKPKILLLDEP 127
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
496-667 |
6.68e-12 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 66.45 E-value: 6.68e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 496 MIEvaFKDLSITLKGKNK--HLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTG-KAPGcimTGMILVNGKVESIQSYK 572
Cdd:cd03258 1 MIE--LKNVSKVFGDTGGkvTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGlERPT---SGSVLVDGTDLTLLSGK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 573 KI------IGFVPQddivHGNL----TVEENLwfsarcRLPADLPKPEKVLVVERVIESLglqhvrdSLVGTVEKRG--- 639
Cdd:cd03258 76 ELrkarrrIGMIFQ----HFNLlssrTVFENV------ALPLEIAGVPKAEIEERVLELL-------ELVGLEDKADayp 138
|
170 180 190
....*....|....*....|....*....|
gi 240256467 640 --ISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:cd03258 139 aqLSGGQKQRVGIARALANNPKVLLCDEAT 168
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
522-667 |
6.81e-12 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 66.05 E-value: 6.81e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 522 KLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGKVESIQSYKKIIGFVPQDDIVHGNLTVEENLWFSARCR 601
Cdd:PRK13539 24 TLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL 101
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 240256467 602 LPADLPkpekvlvVERVIESLGLQHVRDslvgtVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK13539 102 GGEELD-------IAAALEAVGLAPLAH-----LPFGYLSAGQKRRVALARLLVSNRPIWILDEPT 155
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
496-731 |
8.96e-12 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 66.17 E-value: 8.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 496 MIEVafKDLSITLkGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNG------KVESIQ 569
Cdd:TIGR02315 1 MLEV--ENLSKVY-PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGtditklRGKKLR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 570 SYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLPA------DLPKPEKVLVVErVIESLGLQHVRDSLVGTvekrgISGG 643
Cdd:TIGR02315 76 KLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTwrsllgRFSEEDKERALS-ALERVGLADKAYQRADQ-----LSGG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 644 QRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICMVVHQPSYTlfRMFDDLILLAKGGLICYQ 722
Cdd:TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEdGITVIINLHQVDLA--KKYADRIVGLKAGEIVFD 227
|
....*....
gi 240256467 723 GPVKKVEEY 731
Cdd:TIGR02315 228 GAPSELDDE 236
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
501-732 |
1.02e-11 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 66.05 E-value: 1.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 501 FKDLSITLKGkNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNG------KVESIQSYKKI 574
Cdd:cd03256 3 VENLSKTYPN-GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGtdinklKGKALRQLRRQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 575 IGFVPQDDIVHGNLTVEENLWFSARCRLP-----ADLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVN 649
Cdd:cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRStwrslFGLFPKEEKQRALAALERVGLLDKAYQRADQ-----LSGGQQQRVA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 650 VGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICMVVHQPSytLFRMFDDLILLAKGGLICYQGPVKKV 728
Cdd:cd03256 155 IARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREeGITVIVSLHQVD--LAREYADRIVGLKDGRIVFDGPPAEL 232
|
....
gi 240256467 729 EEYF 732
Cdd:cd03256 233 TDEV 236
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
522-666 |
1.10e-11 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 65.95 E-value: 1.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 522 KLSPGRVSAVMGPSGAGKTTFLTALTGKA-PGcimTGMILVNGKvesiqsykKIIGFVPQDDIVHGN------LTVEENL 594
Cdd:TIGR01184 7 TIQQGEFISLIGHSGCGKSTLLNLISGLAqPT---SGGVILEGK--------QITEPGPDRMVVFQNysllpwLTVRENI 75
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 240256467 595 WFSARCRLPaDLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:TIGR01184 76 ALAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLLDEP 141
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
494-666 |
1.22e-11 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 68.62 E-value: 1.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 494 RPMIEVAFKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAP---GCI-MTGMILVNGKVESIQ 569
Cdd:COG4618 326 RPKGRLSVENLTVVPPGSKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPptaGSVrLDGADLSQWDREELG 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 570 SYkkiIGFVPQDdiVH---GnlTVEENLwfsarCRLPAdlPKPEKVLV------VERVIESL--GLqhvrDSLVGtVEKR 638
Cdd:COG4618 406 RH---IGYLPQD--VElfdG--TIAENI-----ARFGD--ADPEKVVAaaklagVHEMILRLpdGY----DTRIG-EGGA 466
|
170 180 190
....*....|....*....|....*....|
gi 240256467 639 GISGGQRKRVnvGLEMVM--EPSLLILDEP 666
Cdd:COG4618 467 RLSGGQRQRI--GLARALygDPRLVVLDEP 494
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
495-718 |
1.37e-11 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 67.94 E-value: 1.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 495 PMIEVafKDLSITLKGKNkhLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGK-APGcimTGMILVNGKVESIQSYKK 573
Cdd:PRK09536 2 PMIDV--SDLSVEFGDTT--VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTlTPT---AGTVLVAGDDVEALSARA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 574 I---IGFVPQDDIVHGNLTVEENLWFSA---RCRLpaDLPKPEKVLVVERVIESLGLQHVRDSLVGTVekrgiSGGQRKR 647
Cdd:PRK09536 75 AsrrVASVPQDTSLSFEFDVRQVVEMGRtphRSRF--DTWTETDRAAVERAMERTGVAQFADRPVTSL-----SGGERQR 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 240256467 648 VNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVVHQPSYTLfRMFDDLILLAKGGL 718
Cdd:PRK09536 148 VLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAA-RYCDELVLLADGRV 217
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
505-666 |
1.92e-11 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 66.98 E-value: 1.92e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 505 SITLKGKNK-----HLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGK-VESIQSYKKIIGFV 578
Cdd:PRK11000 3 SVTLRNVTKaygdvVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKrMNDVPPAERGVGMV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 579 PQDDIVHGNLTVEENLWFSARCrlpADLPKPEKVLVVERVIESLGLQHVRDSlvgtvEKRGISGGQRKRVNVGLEMVMEP 658
Cdd:PRK11000 81 FQSYALYPHLSVAENMSFGLKL---AGAKKEEINQRVNQVAEVLQLAHLLDR-----KPKALSGGQRQRVAIGRTLVAEP 152
|
....*...
gi 240256467 659 SLLILDEP 666
Cdd:PRK11000 153 SVFLLDEP 160
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
494-667 |
2.02e-11 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 67.78 E-value: 2.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 494 RPMIEVafKDLSITLKGKnkHLMRCVTGKLSPG-RVsAVMGPSGAGKTTFLTALTGK-APgciMTGMILVNGKVEsiqsy 571
Cdd:COG0488 313 KKVLEL--EGLSKSYGDK--TLLDDLSLRIDRGdRI-GLIGPNGAGKSTLLKLLAGElEP---DSGTVKLGETVK----- 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 572 kkiIGFVPQD-DIVHGNLTVEENLWfsarcrlpadlpkpekvlvveRVIESLGLQHVRdSLVG-------TVEK--RGIS 641
Cdd:COG0488 380 ---IGYFDQHqEELDPDKTVLDELR---------------------DGAPGGTEQEVR-GYLGrflfsgdDAFKpvGVLS 434
|
170 180
....*....|....*....|....*.
gi 240256467 642 GGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:COG0488 435 GGEKARLALAKLLLSPPNVLLLDEPT 460
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
513-667 |
2.26e-11 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 67.78 E-value: 2.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 513 KHLMRCVTGKLSPG-RVsAVMGPSGAGKTTFLtaltgKapgcIMTGMILV-NGKVeSIQSYKKIiGFVPQDDIVHGNLTV 590
Cdd:COG0488 11 RPLLDDVSLSINPGdRI-GLVGRNGAGKSTLL-----K----ILAGELEPdSGEV-SIPKGLRI-GYLPQEPPLDDDLTV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 591 EENL---------WFSARCRLPADLPKPEKVLV--------------------VERVIESLGLQHV-RDSLVGTVekrgi 640
Cdd:COG0488 79 LDTVldgdaelraLEAELEELEAKLAEPDEDLErlaelqeefealggweaearAEEILSGLGFPEEdLDRPVSEL----- 153
|
170 180
....*....|....*....|....*..
gi 240256467 641 SGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:COG0488 154 SGGWRRRVALARALLSEPDLLLLDEPT 180
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
480-667 |
2.68e-11 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 64.66 E-value: 2.68e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 480 SGVISMANDIDIRKRPMIEvAFKDLSITLKgknkhlmrcvtgklsPGRVSAVMGPSGAGKTTFLTALTGkapgcIMT--- 556
Cdd:cd03267 17 PGLIGSLKSLFKRKYREVE-ALKGISFTIE---------------KGEIVGFIGPNGAGKTTTLKILSG-----LLQpts 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 557 GMILVNGKVesiqSYKKIIGFVPQDDIVHG-------NLTVEENLWFSARCRlpaDLPKPEKVLVVERVIESLGLQHVRD 629
Cdd:cd03267 76 GEVRVAGLV----PWKRRKKFLRRIGVVFGqktqlwwDLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLD 148
|
170 180 190
....*....|....*....|....*....|....*...
gi 240256467 630 SLVgtvekRGISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:cd03267 149 TPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
493-667 |
4.82e-11 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 64.41 E-value: 4.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 493 KRPMIEVafKDLSITLkGKNKHLmRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKA---PGCIMTGMILVNGKveSIQ 569
Cdd:PRK14239 2 TEPILQV--SDLSVYY-NKKKAL-NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNdlnPEVTITGSIVYNGH--NIY 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 570 SykkiigfvPQDDIVhgNLTVEENLWFSArcrlpadlPKPEKVLVVERVIESLGLQHVRD----------SLVGT----- 634
Cdd:PRK14239 76 S--------PRTDTV--DLRKEIGMVFQQ--------PNPFPMSIYENVVYGLRLKGIKDkqvldeavekSLKGAsiwde 137
|
170 180 190
....*....|....*....|....*....|....*....
gi 240256467 635 VEKR------GISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK14239 138 VKDRlhdsalGLSGGQQQRVCIARVLATSPKIILLDEPT 176
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
494-667 |
7.88e-11 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 63.33 E-value: 7.88e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 494 RPMIEVaFKDLSITLKgknkhlmrcvtgklsPGRVSAVMGPSGAGKTTFLTAL------TgkapgcimTGMILVNG---K 564
Cdd:cd03249 13 RPDVPI-LKGLSLTIP---------------PGKTVALVGSSGCGKSTVVSLLerfydpT--------SGEILLDGvdiR 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 565 VESIQSYKKIIGFVPQDDIVHgNLTVEENLWFSARcrlpadlpkPEKVLVVERVIES-------LGLQHVRDSLVGTvek 637
Cdd:cd03249 69 DLNLRWLRSQIGLVSQEPVLF-DGTIAENIRYGKP---------DATDEEVEEAAKKanihdfiMSLPDGYDTLVGE--- 135
|
170 180 190
....*....|....*....|....*....|..
gi 240256467 638 RG--ISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:cd03249 136 RGsqLSGGQKQRIAIARALLRNPKILLLDEAT 167
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
499-747 |
9.35e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 64.05 E-value: 9.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 499 VAFKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTG-KAPGCIMTGMILVNG---KVESIQSYKKI 574
Cdd:PRK13640 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGlLLPDDNPNSKITVDGitlTAKTVWDIREK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 575 IGFVPQD-DIVHGNLTVEENLWFSARCRlpaDLPKPEKVLVVERVIESLGLQHVRDSlvgtvEKRGISGGQRKRVNVGLE 653
Cdd:PRK13640 86 VGIVFQNpDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDS-----EPANLSGGQKQRVAIAGI 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 654 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICMVVHQPSYTlfRMFDDLILLAKGGLICYQGPVK------ 726
Cdd:PRK13640 158 LAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKnNLTVISITHDIDEA--NMADQVLVLDDGKLLAQGSPVEifskve 235
|
250 260 270
....*....|....*....|....*....|....
gi 240256467 727 -------------KVEEYFSSLGIVVPERVNPPD 747
Cdd:PRK13640 236 mlkeigldipfvyKLKNKLKEKGISVPQEINTEE 269
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
523-666 |
1.05e-10 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 63.34 E-value: 1.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 523 LSPGRVSAVMGPSGAGKTTFLTALTG-KAPGcimTGMILVNGKVESIQSYKKiiGFVPQDDIVHGNLTVEENLWFSARCR 601
Cdd:COG4525 30 IESGEFVVALGASGCGKTTLLNLIAGfLAPS---SGEITLDGVPVTGPGADR--GVVFQKDALLPWLNVLDNVAFGLRLR 104
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 240256467 602 lpaDLPKPEKVLVVERVIESLGLQHVrdslvgtvEKRGI---SGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:COG4525 105 ---GVPKAERRARAEELLALVGLADF--------ARRRIwqlSGGMRQRVGIARALAADPRFLLMDEP 161
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
496-667 |
1.30e-10 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 62.70 E-value: 1.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 496 MIEV-----AFKDLSItLKGknkhlmrcVTGKLSPGRVSAVMGPSGAGKTTFLTaltgkapgCIMT------GMILVNGK 564
Cdd:COG1126 1 MIEIenlhkSFGDLEV-LKG--------ISLDVEKGEVVVIIGPSGSGKSTLLR--------CINLleepdsGTITVDGE 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 565 V-----ESIQSYKKIIGFVPQddivHGNL----TVEENlwfsarCRLPadlpkPEKVL------VVERVIESL---GLQH 626
Cdd:COG1126 64 DltdskKDINKLRRKVGMVFQ----QFNLfphlTVLEN------VTLA-----PIKVKkmskaeAEERAMELLervGLAD 128
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 240256467 627 VRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:COG1126 129 KADAYPAQ-----LSGGQQQRVAIARALAMEPKVMLFDEPT 164
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
484-667 |
1.30e-10 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 64.08 E-value: 1.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 484 SMANDIDIRKRPMIEVAFKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTG-KAPGcimTGMILVN 562
Cdd:PRK13536 25 GISEAKASIPGSMSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGmTSPD---AGKITVL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 563 GKVESIQ--SYKKIIGFVPQDDIVHGNLTVEENLW-FSARCRLpadlpkpeKVLVVERVIESLgLQHVRDSLVGTVEKRG 639
Cdd:PRK13536 102 GVPVPARarLARARIGVVPQFDNLDLEFTVRENLLvFGRYFGM--------STREIEAVIPSL-LEFARLESKADARVSD 172
|
170 180
....*....|....*....|....*...
gi 240256467 640 ISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK13536 173 LSGGMKRRLTLARALINDPQLLILDEPT 200
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
498-667 |
1.61e-10 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 62.24 E-value: 1.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 498 EVAFKDLSITLKGKnKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNG---KVESIQSYKKI 574
Cdd:cd03254 2 EIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGidiRDISRKSLRSM 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 575 IGFVPQDDIVHgNLTVEENLwfsarcRLPADLPKPEKVLVVERV------IESL--GLQHVrdslvgtVEKRG--ISGGQ 644
Cdd:cd03254 79 IGVVLQDTFLF-SGTIMENI------RLGRPNATDEEVIEAAKEagahdfIMKLpnGYDTV-------LGENGgnLSQGE 144
|
170 180
....*....|....*....|...
gi 240256467 645 RKRVNVGLEMVMEPSLLILDEPT 667
Cdd:cd03254 145 RQLLAIARAMLRDPKILILDEAT 167
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
523-699 |
2.39e-10 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 61.35 E-value: 2.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 523 LSPGRVSAVMGPSGAGKTTFLTALTGKAPGciMTGMILVNGKVESIQ--SYKKIIGFVPQDDIVHGNLTVEENLWFSarC 600
Cdd:cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLDFQrdSIARGLLYLGHAPGIKTTLSVLENLRFW--H 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 601 RLPADLPkpekvlvVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLR 680
Cdd:cd03231 99 ADHSDEQ-------VEEALARVGLNGFEDRPVAQ-----LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAE 166
|
170
....*....|....*....
gi 240256467 681 ALRREALEGVNICMVVHQP 699
Cdd:cd03231 167 AMAGHCARGGMVVLTTHQD 185
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
494-667 |
2.51e-10 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 64.29 E-value: 2.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 494 RPMIEVAFKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTaltgkapgcIMTGMIL-VNGKVE----SI 568
Cdd:TIGR01842 312 EPEGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLAR---------LIVGIWPpTSGSVRldgaDL 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 569 QSYK-----KIIGFVPQD-DIVHGnlTVEENLwfsARCRlpaDLPKPEKVLV------VERVIesLGLQHVRDSLVGtVE 636
Cdd:TIGR01842 383 KQWDretfgKHIGYLPQDvELFPG--TVAENI---ARFG---ENADPEKIIEaaklagVHELI--LRLPDGYDTVIG-PG 451
|
170 180 190
....*....|....*....|....*....|.
gi 240256467 637 KRGISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:TIGR01842 452 GATLSGGQRQRIALARALYGDPKLVVLDEPN 482
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
522-667 |
3.13e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 62.40 E-value: 3.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 522 KLSPGRVSAVMGPSGAGKTTFLTALTGkapgcIM---TGMILVNGKV-----ESIQSYKKIIGFVPQ--DDIVHGNlTVE 591
Cdd:PRK13639 24 KAEKGEMVALLGPNGAGKSTLFLHFNG-----ILkptSGEVLIKGEPikydkKSLLEVRKTVGIVFQnpDDQLFAP-TVE 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 240256467 592 ENLWFSArcrLPADLPKPEkvlVVERVIESLGlqhvRDSLVGTVEK--RGISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK13639 98 EDVAFGP---LNLGLSKEE---VEKRVKEALK----AVGMEGFENKppHHLSGGQKKRVAIAGILAMKPEIIVLDEPT 165
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
499-667 |
3.24e-10 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 61.33 E-value: 3.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 499 VAFKDLSITLKGKNKHL-MRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGKveSIQSYK----- 572
Cdd:cd03248 12 VKFQNVTFAYPTRPDTLvLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ--PQGGQVLLDGK--PISQYEhkylh 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 573 KIIGFVPQDDIVHGNlTVEENLWFSarcrlpadLPKPEKVLVVERVIES------LGLQHVRDSLVGtvEKRG-ISGGQR 645
Cdd:cd03248 88 SKVSLVGQEPVLFAR-SLQDNIAYG--------LQSCSFECVKEAAQKAhahsfiSELASGYDTEVG--EKGSqLSGGQK 156
|
170 180
....*....|....*....|..
gi 240256467 646 KRVNVGLEMVMEPSLLILDEPT 667
Cdd:cd03248 157 QRVAIARALIRNPQVLILDEAT 178
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
496-667 |
5.17e-10 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 61.26 E-value: 5.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 496 MIEVafKDLSITL-KGKN--KHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGK-VESIQSY 571
Cdd:COG1101 1 MLEL--KNLSKTFnPGTVneKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLP--PDSGSILIDGKdVTKLPEY 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 572 K--KIIGFVPQDDIV--HGNLTVEENLWFSARcR-----LPADLPKPEKVLVVERVIE-SLGLQHVRDSLVGTvekrgIS 641
Cdd:COG1101 77 KraKYIGRVFQDPMMgtAPSMTIEENLALAYR-RgkrrgLRRGLTKKRRELFRELLATlGLGLENRLDTKVGL-----LS 150
|
170 180 190
....*....|....*....|....*....|
gi 240256467 642 GGQRKrvnvGLEMVM----EPSLLILDEPT 667
Cdd:COG1101 151 GGQRQ----ALSLLMatltKPKLLLLDEHT 176
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
499-667 |
6.33e-10 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 60.71 E-value: 6.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 499 VAFKDLSITLKGKNKhLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTAL-------TGKapgcimtgmILVNG---KVESI 568
Cdd:cd03253 1 IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLfrfydvsSGS---------ILIDGqdiREVTL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 569 QSYKKIIGFVPQDdIVHGNLTVEENLWFSarcRLPA---DLPKPEKVLVVERVIESLGLQHvrDSLVGtveKRG--ISGG 643
Cdd:cd03253 71 DSLRRAIGVVPQD-TVLFNDTIGYNIRYG---RPDAtdeEVIEAAKAAQIHDKIMRFPDGY--DTIVG---ERGlkLSGG 141
|
170 180
....*....|....*....|....
gi 240256467 644 QRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:cd03253 142 EKQRVAIARAILKNPPILLLDEAT 165
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
525-667 |
7.52e-10 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 61.74 E-value: 7.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 525 PGRVSAVMGPSGAGKTTFLTALTG-KAPgciMTGMILVNGkvESIQSYKKI----IGFVPQDDIVHGNLTVEENLWFSAR 599
Cdd:PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGlTHP---DAGSISLCG--EPVPSRARHarqrVGVVPQFDNLDPDFTVRENLLVFGR 106
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 240256467 600 CrlpADLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK13537 107 Y---FGLSAAAARALVPPLLEFAKLENKADAKVGE-----LSGGMKRRLTLARALVNDPDVLVLDEPT 166
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
523-719 |
8.32e-10 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 60.80 E-value: 8.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 523 LSPGRVSAVMGPSGAGKTTFLTALTG-KAPgciMTGMILVNGK---VESIQSYKKIIGFVPQDDIVHGNLTVEE------ 592
Cdd:PRK11231 25 LPTGKITALIGPNGCGKSTLLKCFARlLTP---QSGTVFLGDKpisMLSSRQLARRLALLPQHHLTPEGITVRElvaygr 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 593 NLWFSARCRLPADlpkpEKVLVvERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDS 672
Cdd:PRK11231 102 SPWLSLWGRLSAE----DNARV-NQAMEQTRINHLADRRLTD-----LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDI 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 240256467 673 SSSQLLLRALRREALEGVNICMVVH---QPSytlfRMFDDLILLAKGGLI 719
Cdd:PRK11231 172 NHQVELMRLMRELNTQGKTVVTVLHdlnQAS----RYCDHLVVLANGHVM 217
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
497-667 |
9.55e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 60.90 E-value: 9.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 497 IEVafKDLSITLKGKNKHLmRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGkapgcIMT---GMILVNGKV---ESIQS 570
Cdd:PRK13647 5 IEV--EDLHFRYKDGTKAL-KGLSLSIPEGSKTALLGPNGAGKSTLLLHLNG-----IYLpqrGRVKVMGREvnaENEKW 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 571 YKKIIGFVPQD--DIVHGNlTVEENLWFSARcrlPADLPKPEkvlVVERVIESL---GLQHVRDSlvgtvEKRGISGGQR 645
Cdd:PRK13647 77 VRSKVGLVFQDpdDQVFSS-TVWDDVAFGPV---NMGLDKDE---VERRVEEALkavRMWDFRDK-----PPYHLSYGQK 144
|
170 180
....*....|....*....|..
gi 240256467 646 KRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK13647 145 KRVAIAGVLAMDPDVIVLDEPM 166
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
499-667 |
1.11e-09 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 60.19 E-value: 1.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 499 VAFKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGciMTGMILVNG---KVESIQSYKKII 575
Cdd:cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVDGhdlALADPAWLRRQV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 576 GFVPQDDIVHgNLTVEENLwFSARCRLPadlpkpekvlvVERVIESLGLQHVR----------DSLVGTvEKRGISGGQR 645
Cdd:cd03252 79 GVVLQENVLF-NRSIRDNI-ALADPGMS-----------MERVIEAAKLAGAHdfiselpegyDTIVGE-QGAGLSGGQR 144
|
170 180
....*....|....*....|..
gi 240256467 646 KRVNVGLEMVMEPSLLILDEPT 667
Cdd:cd03252 145 QRIAIARALIHNPRILIFDEAT 166
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
523-666 |
1.43e-09 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 60.10 E-value: 1.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 523 LSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGKVESIQSYKKiiGFVPQDDIVHGNLTVEENLWFSARCrl 602
Cdd:PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER--GVVFQNEGLLPWRNVQDNVAFGLQL-- 97
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 240256467 603 pADLPKPEKVLVVERVIESLGLQhvrdslvgTVEKRGI---SGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:PRK11248 98 -AGVEKMQRLEIAHQMLKKVGLE--------GAEKRYIwqlSGGQRQRVGIARALAANPQLLLLDEP 155
|
|
| type_I_sec_LssB |
TIGR03375 |
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some ... |
498-728 |
1.63e-09 |
|
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274550 [Multi-domain] Cd Length: 694 Bit Score: 62.19 E-value: 1.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 498 EVAFKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGciMTGMILVNGkVESIQsykkI--- 574
Cdd:TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVLLDG-VDIRQ----Idpa 535
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 575 -----IGFVPQD-DIVHGnlTVEENLWFSArcrlpadlPKPEKVLVVeRVIESLGL-----QHVR--DSLVGtvEK-RGI 640
Cdd:TIGR03375 536 dlrrnIGYVPQDpRLFYG--TLRDNIALGA--------PYADDEEIL-RAAELAGVtefvrRHPDglDMQIG--ERgRSL 602
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 641 SGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREaLEGVNICMVVHQPSytLFRMFDDLILLAKGGLIC 720
Cdd:TIGR03375 603 SGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRW-LAGKTLVLVTHRTS--LLDLVDRIIVMDNGRIVA 679
|
....*...
gi 240256467 721 yQGPVKKV 728
Cdd:TIGR03375 680 -DGPKDQV 686
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
512-719 |
1.79e-09 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 59.68 E-value: 1.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 512 NKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGKV----------ESIQsYKKIIGFVPQD 581
Cdd:PRK14246 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE--IYDSKIKVDGKVlyfgkdifqiDAIK-LRKEVGMVFQQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 582 DIVHGNLTVEENLWFSARCRLPADlpKPEKVLVVERVIESLGL-QHVRDSLVGTVEKrgISGGQRKRVNVGLEMVMEPSL 660
Cdd:PRK14246 99 PNPFPHLSIYDNIAYPLKSHGIKE--KREIKKIVEECLRKVGLwKEVYDRLNSPASQ--LSGGQQQRLTIARALALKPKV 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 240256467 661 LILDEPTSGLDSSSSQLLLRALrREALEGVNICMVVHQPSYTLfRMFDDLILLAKGGLI 719
Cdd:PRK14246 175 LLMDEPTSMIDIVNSQAIEKLI-TELKNEIAIVIVSHNPQQVA-RVADYVAFLYNGELV 231
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
501-667 |
2.71e-09 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 56.69 E-value: 2.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 501 FKDLSITLKGKNkhLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKapgcimtgMILVNGKVESIQSYKkiIGFVPQ 580
Cdd:cd03221 3 LENLSKTYGGKL--LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGE--------LEPDEGIVTWGSTVK--IGYFEQ 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 581 ddivhgnltveenlwfsarcrlpadlpkpekvlvvervieslglqhvrdslvgtvekrgISGGQRKRVNVGLEMVMEPSL 660
Cdd:cd03221 71 -----------------------------------------------------------LSGGEKMRLALAKLLLENPNL 91
|
....*..
gi 240256467 661 LILDEPT 667
Cdd:cd03221 92 LLLDEPT 98
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
528-666 |
4.23e-09 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 59.50 E-value: 4.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 528 VSAVMGPSGAGKTTFLTALTG-KAPGCimtGMILVNGKVESiQSYKKI--------IGFVPQDDIVHGNLTVEENLWFSA 598
Cdd:PRK11144 26 ITAIFGRSGAGKTSLINAISGlTRPQK---GRIVLNGRVLF-DAEKGIclppekrrIGYVFQDARLFPHYKVRGNLRYGM 101
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 240256467 599 RCRLPADLpkpekvlvvERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:PRK11144 102 AKSMVAQF---------DKIVALLGIEPLLDRYPGS-----LSGGEKQRVAIGRALLTAPELLLMDEP 155
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
523-667 |
4.88e-09 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 60.06 E-value: 4.88e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 523 LSPGRVSAVMGPSGAGKTTFLTALTGKAPGciMTGMILVNGKVES----IQSYKKIIGFVPQDDIVHGNLTVEENLWFsa 598
Cdd:PRK15439 34 LHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLEIGGNPCArltpAKAHQLGIYLVPQEPLLFPNLSVKENILF-- 109
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 240256467 599 rcRLPADLPKPEKVlvvERVIESLGLQHVRDSLVGTVEkrgISGGQRKRVNVGLemVMEPSLLILDEPT 667
Cdd:PRK15439 110 --GLPKRQASMQKM---KQLLAALGCQLDLDSSAGSLE---VADRQIVEILRGL--MRDSRILILDEPT 168
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
502-666 |
4.95e-09 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 57.54 E-value: 4.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 502 KDLSITLKGKnkHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCIMTGMILVNGKvesiqsykkiigfvpqd 581
Cdd:cd03217 4 KDLHVSVGGK--EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGE----------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 582 DIVhgNLTVEEnlwfsaRCRL--------PADLPkpekvlvvervieslGLQhVRDSLVGTVEkrGISGGQRKRVNVGLE 653
Cdd:cd03217 65 DIT--DLPPEE------RARLgiflafqyPPEIP---------------GVK-NADFLRYVNE--GFSGGEKKRNEILQL 118
|
170
....*....|...
gi 240256467 654 MVMEPSLLILDEP 666
Cdd:cd03217 119 LLLEPDLAILDEP 131
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
515-724 |
5.51e-09 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 58.44 E-value: 5.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 515 LMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCimTGMILVNGKVesiqsykkiIGFVPQDDivhGNLTV-EEN 593
Cdd:PRK10619 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS--EGSIVVNGQT---------INLVRDKD---GQLKVaDKN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 594 LWFSARCRLPA-----DLPKPEKVL--VVERVIESLGL--QHVRDSLVGTVEKRGI------------SGGQRKRVNVGL 652
Cdd:PRK10619 86 QLRLLRTRLTMvfqhfNLWSHMTVLenVMEAPIQVLGLskQEARERAVKYLAKVGIderaqgkypvhlSGGQQQRVSIAR 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 240256467 653 EMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVVHQPSYTlfRMFDDLILLAKGGLICYQGP 724
Cdd:PRK10619 166 ALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFA--RHVSSHVIFLHQGKIEEEGA 235
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
499-667 |
6.99e-09 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 59.73 E-value: 6.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 499 VAFKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGkVE----SIQSYKKI 574
Cdd:TIGR02203 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE--PDSGQILLDG-HDladyTLASLRRQ 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 575 IGFVPQDdIVHGNLTVEENLWFSArcrlPADLPKPEkvlvVERVIESLGLQHVRDSL-------VGTVEKRgISGGQRKR 647
Cdd:TIGR02203 408 VALVSQD-VVLFNDTIANNIAYGR----TEQADRAE----IERALAAAYAQDFVDKLplgldtpIGENGVL-LSGGQRQR 477
|
170 180
....*....|....*....|
gi 240256467 648 VNVGLEMVMEPSLLILDEPT 667
Cdd:TIGR02203 478 LAIARALLKDAPILILDEAT 497
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
522-667 |
7.24e-09 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 59.65 E-value: 7.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 522 KLSPGRVSAVMGPSGAGKTTFLTALTG-KAPGcimTGMILVNGKVESIQSYKKI----IGFVPQD-DIVhGNLTVEENLW 595
Cdd:COG1129 26 ELRPGEVHALLGENGAGKSTLMKILSGvYQPD---SGEILLDGEPVRFRSPRDAqaagIAIIHQElNLV-PNLSVAENIF 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 596 FSarcRLPADLPkpekvLV--------VERVIESLGLqHVR-DSLVGTvekrgISGGQRKRVnvglE----MVMEPSLLI 662
Cdd:COG1129 102 LG---REPRRGG-----LIdwramrrrARELLARLGL-DIDpDTPVGD-----LSVAQQQLV----EiaraLSRDARVLI 163
|
....*
gi 240256467 663 LDEPT 667
Cdd:COG1129 164 LDEPT 168
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
496-667 |
7.31e-09 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 58.94 E-value: 7.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 496 MIEvaFKDLSITLKGKNK--HLMRCVTGKLSPGRVSAVMGPSGAGKTTFLtaltgkapGCI------MTGMILVNGKV-- 565
Cdd:COG1135 1 MIE--LENLSKTFPTKGGpvTALDDVSLTIEKGEIFGIIGYSGAGKSTLI--------RCInllerpTSGSVLVDGVDlt 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 566 ----ESIQSYKKIIGFVPQddivHGNL----TVEENLWFSARCrlpADLPKPEkvlVVERVIESLglqhvrdSLVGTVEK 637
Cdd:COG1135 71 alseRELRAARRKIGMIFQ----HFNLlssrTVAENVALPLEI---AGVPKAE---IRKRVAELL-------ELVGLSDK 133
|
170 180 190
....*....|....*....|....*....|....*
gi 240256467 638 RG-----ISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:COG1135 134 ADaypsqLSGGQKQRVGIARALANNPKVLLCDEAT 168
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
496-666 |
8.99e-09 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 57.40 E-value: 8.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 496 MIEVafKDLSITLKGKNkhLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGK-VESIQS--YK 572
Cdd:COG4604 1 MIEI--KNVSKRYGGKV--VLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLP--PDSGEVLVDGLdVATTPSreLA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 573 KIIGFVPQDDIVHGNLTVEENLWFS----ARCRLpadlpKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRV 648
Cdd:COG4604 75 KRLAILRQENHINSRLTVRELVAFGrfpySKGRL-----TAEDREIIDEAIAYLDLEDLADRYLDE-----LSGGQRQRA 144
|
170 180
....*....|....*....|
gi 240256467 649 NVGleMVM--EPSLLILDEP 666
Cdd:COG4604 145 FIA--MVLaqDTDYVLLDEP 162
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
504-667 |
1.57e-08 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 56.56 E-value: 1.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 504 LSITLKGKNK-----HLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTgkapgcIM----TGMILVNG---------KV 565
Cdd:COG4161 1 MSIQLKNINCfygshQALFDINLECPSGETLVLLGPSGAGKSSLLRVLN------LLetpdSGQLNIAGhqfdfsqkpSE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 566 ESIQSYKKIIGFVPQDDIVHGNLTVEENLwFSARCRLpADLPKPEKVLVVERVIESLGLQHVRDSLvgtveKRGISGGQR 645
Cdd:COG4161 75 KAIRLLRQKVGMVFQQYNLWPHLTVMENL-IEAPCKV-LGLSKEQAREKAMKLLARLRLTDKADRF-----PLHLSGGQQ 147
|
170 180
....*....|....*....|..
gi 240256467 646 KRVNVGLEMVMEPSLLILDEPT 667
Cdd:COG4161 148 QRVAIARALMMEPQVLLFDEPT 169
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
523-666 |
2.57e-08 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 55.20 E-value: 2.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 523 LSPGRVSAVMGPSGAGKTTFLTALTGKAPGciMTGMILVNGkvESIQSykkiigfvpQDDIVHGN-------------LT 589
Cdd:PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQG--EPIRR---------QRDEYHQDllylghqpgikteLT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 590 VEENLWFSARCRLPADlpkpekvlvVERVIESL---GLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:PRK13538 91 ALENLRFYQRLHGPGD---------DEALWEALaqvGLAGFEDVPVRQ-----LSAGQQRRVALARLWLTRAPLWILDEP 156
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
522-749 |
3.01e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 56.55 E-value: 3.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 522 KLSPGRVSAVMGPSGAGKTTFLTaLTGkapGCIM--TGMILVNG--------KVESIQSYKKIIGFV---PQDDIVHGnl 588
Cdd:PRK13645 33 TFKKNKVTCVIGTTGSGKSTMIQ-LTN---GLIIseTGQTIVGDyaipanlkKIKEVKRLRKEIGLVfqfPEYQLFQE-- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 589 TVEENLWFSarcrlPADLPKpEKVLVVERVIESLGLQHVRDSLVgtveKRG---ISGGQRKRVNVGLEMVMEPSLLILDE 665
Cdd:PRK13645 107 TIEKDIAFG-----PVNLGE-NKQEAYKKVPELLKLVQLPEDYV----KRSpfeLSGGQKRRVALAGIIAMDGNTLVLDE 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 666 PTSGLDSSSSQLLLRALRREALE-GVNICMVVHQPSYTLfRMFDDLILLAKGGLICYQGPVkkveEYFSSLGIVVPERVN 744
Cdd:PRK13645 177 PTGGLDPKGEEDFINLFERLNKEyKKRIIMVTHNMDQVL-RIADEVIVMHEGKVISIGSPF----EIFSNQELLTKIEID 251
|
....*
gi 240256467 745 PPDYY 749
Cdd:PRK13645 252 PPKLY 256
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
496-667 |
3.01e-08 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 56.60 E-value: 3.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 496 MIEVafKDLSITLKGKNKHLmRCVTG---KLSPGRVSAVMGPSGAGKTTFLTALTG-KAPGCIMTGMILVNGkvESIQS- 570
Cdd:COG0444 1 LLEV--RNLKVYFPTRRGVV-KAVDGvsfDVRRGETLGLVGESGSGKSTLARAILGlLPPPGITSGEILFDG--EDLLKl 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 571 ----YKKI----IGFVPQD------------DIV------HGNLTVEEnlwfsARcrlpadlpkpekvlvvERVIESLgl 624
Cdd:COG0444 76 sekeLRKIrgreIQMIFQDpmtslnpvmtvgDQIaeplriHGGLSKAE-----AR----------------ERAIELL-- 132
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 240256467 625 qhvrdSLVG--TVEKRG------ISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:COG0444 133 -----ERVGlpDPERRLdrypheLSGGMRQRVMIARALALEPKLLIADEPT 178
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
526-666 |
3.25e-08 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 57.02 E-value: 3.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 526 GRVSAVMGPSGAGKTTFLTALTGKAPGciMTGMILVNGK-VESIQSYKKIIGFVPQDDIVHGNLTVEENLWFSARCrlpa 604
Cdd:PRK10851 28 GQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTdVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTV---- 101
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 240256467 605 dLPK---PEKVLV---VERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:PRK10851 102 -LPRrerPNAAAIkakVTQLLEMVQLAHLADRYPAQ-----LSGGQKQRVALARALAVEPQILLLDEP 163
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
499-666 |
3.38e-08 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 55.17 E-value: 3.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 499 VAFKDLSITLKGKNKH---LMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGKvesiqsykkiI 575
Cdd:cd03250 1 ISVEDASFTWDSGEQEtsfTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE--KLSGSVSVPGS----------I 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 576 GFVPQDD-IVHGnlTVEENLWFSArcrlPADlpkPEKvlvVERVIESLGLQhvRD---------SLVGtveKRGI--SGG 643
Cdd:cd03250 69 AYVSQEPwIQNG--TIRENILFGK----PFD---EER---YEKVIKACALE--PDleilpdgdlTEIG---EKGInlSGG 131
|
170 180
....*....|....*....|...
gi 240256467 644 QRKRVNVGLEMVMEPSLLILDEP 666
Cdd:cd03250 132 QKQRISLARAVYSDADIYLLDDP 154
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
484-734 |
4.02e-08 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 55.87 E-value: 4.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 484 SMANDIDIRKRPMIEVafkdlSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALT---GKAPGCIMTGMIL 560
Cdd:PRK14271 10 SGAADVDAAAPAMAAV-----NLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNrmnDKVSGYRYSGDVL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 561 VNGKveSIQSYKKIIGFVPQDDIVHGN-----LTVEENLWfsARCRLPADLPKPEKVLVVERVIESLGL-QHVRDSLVGT 634
Cdd:PRK14271 85 LGGR--SIFNYRDVLEFRRRVGMLFQRpnpfpMSIMDNVL--AGVRAHKLVPRKEFRGVAQARLTEVGLwDAVKDRLSDS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 635 VEKrgISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREAlEGVNICMVVHQPSYTLfRMFDDLILLA 714
Cdd:PRK14271 161 PFR--LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA-DRLTVIIVTHNLAQAA-RISDRAALFF 236
|
250 260
....*....|....*....|
gi 240256467 715 KGGLIcYQGPvkkVEEYFSS 734
Cdd:PRK14271 237 DGRLV-EEGP---TEQLFSS 252
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
523-667 |
4.62e-08 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 57.16 E-value: 4.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 523 LSPGRVSAVMGPSGAGKTTFLTALTGKAPgciMTGMILVNGkVE----SIQSYKKIIGFVPQD-DIVHGnlTVEENLwfs 597
Cdd:PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFLP---YQGSLKING-IElrelDPESWRKHLSWVGQNpQLPHG--TLRDNV--- 443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 598 arcrLPADLPKPEKVL--VVERV-----IESL--GLQH-VRDslvgtvEKRGISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK11174 444 ----LLGNPDASDEQLqqALENAwvsefLPLLpqGLDTpIGD------QAAGLSVGQAQRLALARALLQPCQLLLLDEPT 513
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
493-667 |
4.76e-08 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 55.79 E-value: 4.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 493 KRPMIEVafKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGK-APGcimTGMILVNGKV---ESI 568
Cdd:PRK13635 2 KEEIIRV--EHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLlLPE---AGTITVGGMVlseETV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 569 QSYKKIIGFVPQ--DDIVHGNlTVEENLWFSARCRlpaDLPKPEkvlVVERVIESLGLQHVRDSLvgTVEKRGISGGQRK 646
Cdd:PRK13635 77 WDVRRQVGMVFQnpDNQFVGA-TVQDDVAFGLENI---GVPREE---MVERVDQALRQVGMEDFL--NREPHRLSGGQKQ 147
|
170 180
....*....|....*....|.
gi 240256467 647 RVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK13635 148 RVAIAGVLALQPDIIILDEAT 168
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
500-667 |
5.65e-08 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 53.98 E-value: 5.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 500 AFKDLSITLKgknkhlmrcvtgklsPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGKVESIQSYKKI----I 575
Cdd:cd03215 15 AVRDVSFEVR---------------AGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSPRDAiragI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 576 GFVPQDDIVHG---NLTVEENLwfSARCRLpadlpkpekvlvvervieslglqhvrdslvgtvekrgiSGGQRKRVNVGL 652
Cdd:cd03215 78 AYVPEDRKREGlvlDLSVAENI--ALSSLL--------------------------------------SGGNQQKVVLAR 117
|
170
....*....|....*
gi 240256467 653 EMVMEPSLLILDEPT 667
Cdd:cd03215 118 WLARDPRVLILDEPT 132
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
491-666 |
5.69e-08 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 55.00 E-value: 5.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 491 IRKRPMIEVAFKDLSITLKGknkhlmrcvtgklspGRVSAVMGPSGAGKTTFLTaltgkapgciM--------TGMILVN 562
Cdd:cd03295 7 TKRYGGGKKAVNNLNLEIAK---------------GEFLVLIGPSGSGKTTTMK----------MinrlieptSGEIFID 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 563 GkvESIQSYKKI-----IGFVPQDDIVHGNLTVEENLwfsarcrlpADLPKPEKVL---VVERVIESLGLQHVRDSLVGT 634
Cdd:cd03295 62 G--EDIREQDPVelrrkIGYVIQQIGLFPHMTVEENI---------ALVPKLLKWPkekIRERADELLALVGLDPAEFAD 130
|
170 180 190
....*....|....*....|....*....|..
gi 240256467 635 VEKRGISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:cd03295 131 RYPHELSGGQQQRVGVARALAADPPLLLMDEP 162
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
519-667 |
5.76e-08 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 54.89 E-value: 5.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 519 VTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCimTGMILVNGKV----ESIQSYKKIIGFVPQDDIVHGNLTVEENL 594
Cdd:PRK11614 24 VSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT--SGRIVFDGKDitdwQTAKIMREAVAIVPEGRRVFSRMTVEENL 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 240256467 595 ----WFSARCRLPADlpkpekvlvVERVIESLG-LQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK11614 102 amggFFAERDQFQER---------IKWVYELFPrLHERRIQRAGT-----MSGGEQQMLAIGRALMSQPRLLLLDEPS 165
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
512-730 |
6.00e-08 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 55.23 E-value: 6.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 512 NKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALT--------GKAPGCI-MTGMILVNGKVESIQSYKKIiGFVPQDD 582
Cdd:PRK14267 16 SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNrllelneeARVEGEVrLFGRNIYSPDVDPIEVRREV-GMVFQYP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 583 IVHGNLTVEENLWFSARCRlpaDLPKPEKVL--VVERVIESLGL-QHVRDSLvgTVEKRGISGGQRKRVNVGLEMVMEPS 659
Cdd:PRK14267 95 NPFPHLTIYDNVAIGVKLN---GLVKSKKELdeRVEWALKKAALwDEVKDRL--NDYPSNLSGGQRQRLVIARALAMKPK 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 240256467 660 LLILDEPTSGLDSSSSQLLLRALrREALEGVNICMVVHQPSYTLfRMFDDLILLAKGGLIcYQGPVKKVEE 730
Cdd:PRK14267 170 ILLMDEPTANIDPVGTAKIEELL-FELKKEYTIVLVTHSPAQAA-RVSDYVAFLYLGKLI-EVGPTRKVFE 237
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
523-716 |
8.97e-08 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 54.63 E-value: 8.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 523 LSPGRVSAVMGPSGAGKTTFLTALTG-----KAPGC---IMTGMILVNGKV-ESIQSYKKIIGFVPQDDIVHGNLTVEEN 593
Cdd:PRK09984 27 IHHGEMVALLGPSGSGKSTLLRHLSGlitgdKSAGShieLLGRTVQREGRLaRDIRKSRANTGYIFQQFNLVNRLSVLEN 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 594 LWFSARCRLP---------ADLPKPEKVLVVERVieslGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILD 664
Cdd:PRK09984 107 VLIGALGSTPfwrtcfswfTREQKQRALQALTRV----GMVHFAHQRVST-----LSGGQQQRVAIARALMQQAKVILAD 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 240256467 665 EPTSGLDSSSSQLLLRALRR-EALEGVNICMVVHQPSYTLfRMFDDLILLAKG 716
Cdd:PRK09984 178 EPIASLDPESARIVMDTLRDiNQNDGITVVVTLHQVDYAL-RYCERIVALRQG 229
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
487-728 |
1.04e-07 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 54.53 E-value: 1.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 487 NDIDIRKrpmIEVAFKDLSItLKGknkhlmrcVTGKLSPGRVSAVMGPSGAGKTTFLTA---LTGKAPGCIMTGMILVNG 563
Cdd:PRK14247 2 NKIEIRD---LKVSFGQVEV-LDG--------VNLEIPDNTITALMGPSGSGKSTLLRVfnrLIELYPEARVSGEVYLDG 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 564 ----KVESIQSYKKI-IGFVPQDDIvhGNLTVEENLWFSARCRlpaDLPKPEKVLVvERVIESLG----LQHVRDSLVGT 634
Cdd:PRK14247 70 qdifKMDVIELRRRVqMVFQIPNPI--PNLSIFENVALGLKLN---RLVKSKKELQ-ERVRWALEkaqlWDEVKDRLDAP 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 635 VEKrgISGGQRKRVNVGLEMVMEPSLLILDEPTsgldssSSQLLLRALRREAL-----EGVNICMVVHQPSYTLfRMFDD 709
Cdd:PRK14247 144 AGK--LSGGQQQRLCIARALAFQPEVLLADEPT------ANLDPENTAKIESLflelkKDMTIVLVTHFPQQAA-RISDY 214
|
250
....*....|....*....
gi 240256467 710 LILLAKGGlICYQGPVKKV 728
Cdd:PRK14247 215 VAFLYKGQ-IVEWGPTREV 232
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
526-741 |
1.19e-07 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 54.38 E-value: 1.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 526 GRVSAVMGPSGAGKTTFLTALTG--KaPGcimTGMILVNGKV------ESIQSYKKIIGFVPQ------------DDIVH 585
Cdd:TIGR04521 31 GEFVAIIGHTGSGKSTLIQHLNGllK-PT---SGTVTIDGRDitakkkKKLKDLRKKVGLVFQfpehqlfeetvyKDIAF 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 586 G--NLtveenlwfsarcrlpaDLPKPEkvlVVERVIESLglqhvrdSLVG---TVEKR---GISGGQRKRVNVGLEMVME 657
Cdd:TIGR04521 107 GpkNL----------------GLSEEE---AEERVKEAL-------ELVGldeEYLERspfELSGGQMRRVAIAGVLAME 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 658 PSLLILDEPTsgldssssQLLLRALRREALE---------GVNICMVVHQPSyTLFRMFDDLILLAKGGLIcYQGPVKKV 728
Cdd:TIGR04521 161 PEVLILDEPT--------AGLDPKGRKEILDlfkrlhkekGLTVILVTHSME-DVAEYADRVIVMHKGKIV-LDGTPREV 230
|
250
....*....|....*.
gi 240256467 729 ---EEYFSSLGIVVPE 741
Cdd:TIGR04521 231 fsdVDELEKIGLDVPE 246
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
499-667 |
1.24e-07 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 52.70 E-value: 1.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 499 VAFKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTG--KApgciMTGMILVNGKveSIQSYK---- 572
Cdd:cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGdlKP----QQGEITLDGV--PVSDLEkals 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 573 KIIGFVPQDdiVHgnltveenlWFSARCRlpadlpkpekvlvverviESLGLQhvrdslvgtvekrgISGGQRKRVNVGL 652
Cdd:cd03247 75 SLISVLNQR--PY---------LFDTTLR------------------NNLGRR--------------FSGGERQRLALAR 111
|
170
....*....|....*
gi 240256467 653 EMVMEPSLLILDEPT 667
Cdd:cd03247 112 ILLQDAPIVLLDEPT 126
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
525-666 |
1.64e-07 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 55.90 E-value: 1.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 525 PGRVSAVMGPSGAGKTTFLTALTGKAPGcIMTGMILVNGKVesiqsykkiiGFVPQDDIVHgNLTVEENLWFSArcrlPA 604
Cdd:PLN03130 642 VGSLVAIVGSTGEGKTSLISAMLGELPP-RSDASVVIRGTV----------AYVPQVSWIF-NATVRDNILFGS----PF 705
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 240256467 605 DLPKpekvlvVERVIESLGLQHVRDSLVG----TVEKRG--ISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:PLN03130 706 DPER------YERAIDVTALQHDLDLLPGgdltEIGERGvnISGGQKQRVSMARAVYSNSDVYIFDDP 767
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
536-667 |
2.30e-07 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 54.64 E-value: 2.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 536 GAGKTTFLTALTGKAPgcIMTGMILVNGKVESIQSYKK-I---IGFVPQDDIVHG---NLTVEENL---WFSARCRLPAd 605
Cdd:COG1129 288 GAGRTELARALFGADP--ADSGEIRLDGKPVRIRSPRDaIragIAYVPEDRKGEGlvlDLSIRENItlaSLDRLSRGGL- 364
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 240256467 606 LPKPEKVLVVERVIESLGlqhVR----DSLVGTvekrgISGG-QRKrVNVGLEMVMEPSLLILDEPT 667
Cdd:COG1129 365 LDRRRERALAEEYIKRLR---IKtpspEQPVGN-----LSGGnQQK-VVLAKWLATDPKVLILDEPT 422
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
526-666 |
3.06e-07 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 53.23 E-value: 3.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 526 GRVSAVMGPSGAGKTTFLTALTGKAPGciMTGMILVNGkvESIQSY--------KKIIGFVPQDDIVHGNLTVEENLWFS 597
Cdd:PRK11831 33 GKITAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDG--ENIPAMsrsrlytvRKRMSMLFQSGALFTDMNVFDNVAYP 108
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 240256467 598 AR--CRLPADLPKPekvlVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:PRK11831 109 LRehTQLPAPLLHS----TVMMKLEAVGLRGAAKLMPSE-----LSGGMARRAALARAIALEPDLIMFDEP 170
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
514-666 |
3.75e-07 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 52.28 E-value: 3.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 514 HLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTG-KAPGcimTGMILVNGKVESIQS-YKKIIGFVPQDDIVHGNLTVE 591
Cdd:PRK10771 13 HLPMRFDLTVERGERVAILGPSGAGKSTLLNLIAGfLTPA---SGSLTLNGQDHTTTPpSRRPVSMLFQENNLFSHLTVA 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 240256467 592 EN--LWFSARCRLPAdlpkpEKVLVVERVIESLGLQHVRDSLVGTVekrgiSGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:PRK10771 90 QNigLGLNPGLKLNA-----AQREKLHAIARQMGIEDLLARLPGQL-----SGGQRQRVALARCLVREQPILLLDEP 156
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
531-666 |
3.90e-07 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 53.80 E-value: 3.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 531 VMGPSGAGKTTFLTALTG-KAPGcimTGMILVNGK-VESIQSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRlpaDLPK 608
Cdd:PRK09452 45 LLGPSGCGKTTVLRLIAGfETPD---SGRIMLDGQdITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPA 118
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 240256467 609 PEkvlVVERVIESLGLQHVRDslVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:PRK09452 119 AE---ITPRVMEALRMVQLEE--FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDES 171
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
493-667 |
3.91e-07 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 54.25 E-value: 3.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 493 KRPMIEVAFKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGkvESIQSYK 572
Cdd:PRK11176 336 ERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD--IDEGEILLDG--HDLRDYT 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 573 -----KIIGFVPQDdiVH-GNLTVEENLWFSARCRLP-ADLPKPEKVLVVERVIEslGLQHVRDSLVGtveKRGI--SGG 643
Cdd:PRK11176 412 laslrNQVALVSQN--VHlFNDTIANNIAYARTEQYSrEQIEEAARMAYAMDFIN--KMDNGLDTVIG---ENGVllSGG 484
|
170 180
....*....|....*....|....
gi 240256467 644 QRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK11176 485 QRQRIAIARALLRDSPILILDEAT 508
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
526-716 |
3.96e-07 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 54.60 E-value: 3.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 526 GRVSAVMGPSGAGKTTFLTALTGKAPGcIMTGMILVNGKVesiqsykkiiGFVPQDDIVHgNLTVEENLWFSARCrlpad 605
Cdd:PLN03232 643 GSLVAIVGGTGEGKTSLISAMLGELSH-AETSSVVIRGSV----------AYVPQVSWIF-NATVRENILFGSDF----- 705
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 606 lpKPEKVLvveRVIESLGLQHVRDSLVG----TVEKRG--ISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLL 679
Cdd:PLN03232 706 --ESERYW---RAIDVTALQHDLDLLPGrdltEIGERGvnISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVF 780
|
170 180 190
....*....|....*....|....*....|....*..
gi 240256467 680 RALRREALEGVNICMVVHQPSYtlFRMFDDLILLAKG 716
Cdd:PLN03232 781 DSCMKDELKGKTRVLVTNQLHF--LPLMDRIILVSEG 815
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
515-667 |
4.07e-07 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 52.13 E-value: 4.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 515 LMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTG-KAPgciMTGMILVNGK-VESIQSYKKI------IGFVPQDDIVHG 586
Cdd:PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGlDTP---TSGDVIFNGQpMSKLSSAAKAelrnqkLGFIYQFHHLLP 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 587 NLTVEENLwfsarcRLPADLPKPEKVLVVERVIESLglqhvrdSLVGtVEKRG------ISGGQRKRVNVGLEMVMEPSL 660
Cdd:PRK11629 101 DFTALENV------AMPLLIGKKKPAEINSRALEML-------AAVG-LEHRAnhrpseLSGGERQRVAIARALVNNPRL 166
|
....*..
gi 240256467 661 LILDEPT 667
Cdd:PRK11629 167 VLADEPT 173
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
522-667 |
6.56e-07 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 53.11 E-value: 6.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 522 KLSPGRVSAVMGPSGAGKTTFLTALTG--KAPGcimtGMILVNGKVESIQSykkiigfvPQDDI------VH------GN 587
Cdd:COG3845 27 TVRPGEIHALLGENGAGKSTLMKILYGlyQPDS----GEILIDGKPVRIRS--------PRDAIalgigmVHqhfmlvPN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 588 LTVEENLWFSARcRLPADLPKPEKVL-VVERVIESLGLqHVR-DSLVGTvekrgISGGQRKRVnvglEMV----MEPSLL 661
Cdd:COG3845 95 LTVAENIVLGLE-PTKGGRLDRKAARaRIRELSERYGL-DVDpDAKVED-----LSVGEQQRV----EILkalyRGARIL 163
|
....*.
gi 240256467 662 ILDEPT 667
Cdd:COG3845 164 ILDEPT 169
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
499-666 |
9.28e-07 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 52.03 E-value: 9.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 499 VAFKDLSITLKgknkhlmrcvtgklsPGRVSAVMGPSGAGKTTFLTALTGkapgcIMT---GMILVNGKVESIQSYKKIi 575
Cdd:COG4152 15 TAVDDVSFTVP---------------KGEIFGLLGPNGAGKTTTIRIILG-----ILApdsGEVLWDGEPLDPEDRRRI- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 576 GFVPQDDIVHGNLTVEENLWFSARCRlpaDLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMV 655
Cdd:COG4152 74 GYLPEERGLYPKMKVGEQLVYLARLK---GLSKAEAKRRADEWLERLGLGDRANKKVEE-----LSKGNQQKVQLIAALL 145
|
170
....*....|.
gi 240256467 656 MEPSLLILDEP 666
Cdd:COG4152 146 HDPELLILDEP 156
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
495-666 |
9.77e-07 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 51.58 E-value: 9.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 495 PMIEVafKDLSITLKgkNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgciMTGMILVNGKVE-------- 566
Cdd:PRK14258 6 PAIKV--NNLSFYYD--TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEffnqniye 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 567 ---SIQSYKKIIGFV-PQDDIVhgNLTVEENLWFSARcrLPADLPKPEKVLVVERVIESLGLQhvrDSLVGTVEKRGI-- 640
Cdd:PRK14258 79 rrvNLNRLRRQVSMVhPKPNLF--PMSVYDNVAYGVK--IVGWRPKLEIDDIVESALKDADLW---DEIKHKIHKSALdl 151
|
170 180
....*....|....*....|....*.
gi 240256467 641 SGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:PRK14258 152 SGGQQQRLCIARALAVKPKVLLMDEP 177
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
506-665 |
1.37e-06 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 50.73 E-value: 1.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 506 ITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCIMTGMILVngkvesiqsykkiigfvpQDDIVH 585
Cdd:COG2401 36 VELRVVERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPVAGCVDV------------------PDNQFG 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 586 GNLTVEENLWfsarcrlpadlPKPEKVLVVERVieslglqhvrdSLVGTVEK-------RGISGGQRKRVNVGLEMVMEP 658
Cdd:COG2401 98 REASLIDAIG-----------RKGDFKDAVELL-----------NAVGLSDAvlwlrrfKELSTGQKFRFRLALLLAERP 155
|
....*..
gi 240256467 659 SLLILDE 665
Cdd:COG2401 156 KLLVIDE 162
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
521-667 |
1.52e-06 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 52.12 E-value: 1.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 521 GKLSPGRVSAVMGPSGAGKTTFLTALTG--KAPGcimtGMILVNGKVesiqSYKkiigfvPQ---DDIvhgNLTVEENLw 595
Cdd:PRK13409 360 GEIYEGEVIGIVGPNGIGKTTFAKLLAGvlKPDE----GEVDPELKI----SYK------PQyikPDY---DGTVEDLL- 421
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 240256467 596 FSARCRLPADLPKPEkvlvverVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK13409 422 RSITDDLGSSYYKSE-------IIKPLQLERLLDKNVKD-----LSGGELQRVAIAACLSRDADLYLLDEPS 481
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
525-666 |
1.63e-06 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 50.45 E-value: 1.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 525 PGRVSAVMGPSGAGKTTFLTALTGKaPGCIMT-GMILVNGKvesiqsykkiigfvpqdDIVhgNLTVEE----------- 592
Cdd:COG0396 25 PGEVHAIMGPNGSGKSTLAKVLMGH-PKYEVTsGSILLDGE-----------------DIL--ELSPDEraragiflafq 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 593 ---------NLWF-----SARCRLPADLPKPEKVlvVERVIESLGLqhvRDSLVgtveKR----GISGGQRKRVNVgLEM 654
Cdd:COG0396 85 ypveipgvsVSNFlrtalNARRGEELSAREFLKL--LKEKMKELGL---DEDFL----DRyvneGFSGGEKKRNEI-LQM 154
|
170
....*....|...
gi 240256467 655 -VMEPSLLILDEP 666
Cdd:COG0396 155 lLLEPKLAILDET 167
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
526-667 |
1.75e-06 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 50.76 E-value: 1.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 526 GRVSAVMGPSGAGKTTFLTALTG-KAPgciMTGMILVNG----KVESIQSYKKIIGFV---PQDDIVhgNLTVEENLWFS 597
Cdd:PRK13644 28 GEYIGIIGKNGSGKSTLALHLNGlLRP---QKGKVLVSGidtgDFSKLQGIRKLVGIVfqnPETQFV--GRTVEEDLAFG 102
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 240256467 598 AR--CRLPADLPKpekvlVVERVIESLGLQHVRDSlvgtvEKRGISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK13644 103 PEnlCLPPIEIRK-----RVDRALAEIGLEKYRHR-----SPKTLSGGQGQCVALAGILTMEPECLIFDEVT 164
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
526-666 |
1.99e-06 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 51.26 E-value: 1.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 526 GRVSAVMGPSGAGKTTFLTALTG-KAPgciMTGMILVNGK---VESIQsyKKIIGFVPQDDIVHGNLTVEENLWFSARCR 601
Cdd:PRK11432 32 GTMVTLLGPSGCGKTTVLRLVAGlEKP---TEGQIFIDGEdvtHRSIQ--QRDICMVFQSYALFPHMSLGENVGYGLKML 106
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 240256467 602 lpaDLPKPEkvlVVERVIESLGLQhvrdSLVGtVEKR---GISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:PRK11432 107 ---GVPKEE---RKQRVKEALELV----DLAG-FEDRyvdQISGGQQQRVALARALILKPKVLLFDEP 163
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
498-667 |
2.19e-06 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 51.89 E-value: 2.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 498 EVAFKDLSITLKGKNKHLmRCVTGKLSPGRVSAVMGPSGAGKTTfLTALTGKA--PgciMTGMILVNG---KVESIQSYK 572
Cdd:PRK13657 334 AVEFDDVSFSYDNSRQGV-EDVSFEAKPGQTVAIVGPTGAGKST-LINLLQRVfdP---QSGRILIDGtdiRTVTRASLR 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 573 KIIGFVPQDDIVHgNLTVEENLwfsarcRL-PADLPKPEKVLVVERV-----IE--SLGLqhvrDSLVGtveKRG--ISG 642
Cdd:PRK13657 409 RNIAVVFQDAGLF-NRSIEDNI------RVgRPDATDEEMRAAAERAqahdfIErkPDGY----DTVVG---ERGrqLSG 474
|
170 180
....*....|....*....|....*
gi 240256467 643 GQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK13657 475 GERQRLAIARALLKDPPILILDEAT 499
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
499-667 |
2.22e-06 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 52.03 E-value: 2.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 499 VAFKDLSITLKGK-NKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTAL------TGkapgcimtGMILVNGK-VESIQ- 569
Cdd:TIGR00958 479 IEFQDVSFSYPNRpDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLqnlyqpTG--------GQVLLDGVpLVQYDh 550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 570 -SYKKIIGFVPQDDIVHGNlTVEENLWFSARCRLPADLPKPEKVLVVERVIesLGLQHVRDSLVGtvEKRG-ISGGQRKR 647
Cdd:TIGR00958 551 hYLHRQVALVGQEPVLFSG-SVRENIAYGLTDTPDEEIMAAAKAANAHDFI--MEFPNGYDTEVG--EKGSqLSGGQKQR 625
|
170 180
....*....|....*....|
gi 240256467 648 VNVGLEMVMEPSLLILDEPT 667
Cdd:TIGR00958 626 IAIARALVRKPRVLILDEAT 645
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
500-667 |
2.86e-06 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 50.17 E-value: 2.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 500 AFKDLSITLKGKNkhLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCimTGMILVNGK-VESIQS--YKKIIG 576
Cdd:PRK10575 13 ALRNVSFRVPGRT--LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS--EGEILLDAQpLESWSSkaFARKVA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 577 FVPQDDIVHGNLTVEENL------WFSARCRL-PADLPKpekvlvVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVN 649
Cdd:PRK10575 89 YLPQQLPAAEGMTVRELVaigrypWHGALGRFgAADREK------VEEAISLVGLKPLAHRLVDS-----LSGGERQRAW 157
|
170
....*....|....*...
gi 240256467 650 VGLEMVMEPSLLILDEPT 667
Cdd:PRK10575 158 IAMLVAQDSRCLLLDEPT 175
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
511-724 |
2.87e-06 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 50.39 E-value: 2.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 511 KNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGK-APgciMTGMILVNGKV-----ESIQSYKKIIGFVPQD--- 581
Cdd:PRK13638 12 QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLlRP---QKGAVLWQGKPldyskRGLLALRQQVATVFQDpeq 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 582 DIVHGNltVEENLWFSARcrlpaDLPKPEKVlVVERVIESLGL---QHVRDSLVgtvekRGISGGQRKRVNVGLEMVMEP 658
Cdd:PRK13638 89 QIFYTD--IDSDIAFSLR-----NLGVPEAE-ITRRVDEALTLvdaQHFRHQPI-----QCLSHGQKKRVAIAGALVLQA 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 240256467 659 SLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVVHQPSYtLFRMFDDLILLAKGGLICYQGP 724
Cdd:PRK13638 156 RYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDL-IYEISDAVYVLRQGQILTHGAP 220
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
499-740 |
2.90e-06 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 50.62 E-value: 2.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 499 VAFKDLSITLKgKNKhlmrcvtgklspgrVSAVMGPSGAGKTTFLTALTG---KAPGCIMTGMILVNGKVES-------- 567
Cdd:PRK13631 40 VALNNISYTFE-KNK--------------IYFIIGNSGSGKSTLVTHFNGlikSKYGTIQVGDIYIGDKKNNhelitnpy 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 568 ---IQSYK---KIIGFV---PQDDIVHGnlTVEENLWFSarcrlPADL--PKPEKVLVVERVIESLGLqhvrDSLVGTVE 636
Cdd:PRK13631 105 skkIKNFKelrRRVSMVfqfPEYQLFKD--TIEKDIMFG-----PVALgvKKSEAKKLAKFYLNKMGL----DDSYLERS 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 637 KRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVVHQPSYTLfRMFDDLILLAKG 716
Cdd:PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVL-EVADEVIVMDKG 252
|
250 260
....*....|....*....|....*.
gi 240256467 717 GLICYQGP--VKKVEEYFSSLGIVVP 740
Cdd:PRK13631 253 KILKTGTPyeIFTDQHIINSTSIQVP 278
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
523-666 |
2.95e-06 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 49.46 E-value: 2.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 523 LSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGKVESIQSYKKIIGFVPQDDIVHGNLTVEENLWFsaRCRL 602
Cdd:PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHF--LCGL 109
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 240256467 603 PADLPK--PEKVLVVerviesLGLQHVRDSLVgtvekRGISGGQRKRVNVGlEMVMEPS-LLILDEP 666
Cdd:PRK13543 110 HGRRAKqmPGSALAI------VGLAGYEDTLV-----RQLSAGQKKRLALA-RLWLSPApLWLLDEP 164
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
496-667 |
3.34e-06 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 49.71 E-value: 3.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 496 MIEvaFKDLSITLkGKNKHLMRcVTGKLSPGRVSAVMGPSGAGKTTFL---TALTGKAPGCIMTGMILVNGKVESIQSYK 572
Cdd:PRK09493 1 MIE--FKNVSKHF-GPTQVLHN-IDLNIDQGEVVVIIGPSGSGKSTLLrciNKLEEITSGDLIVDGLKVNDPKVDERLIR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 573 KIIGFVPQDDIVHGNLTVEENLWFSarcrlPADLPKPEKVLVVERVIESLGLqhvrdslVGTVEKRG-----ISGGQRKR 647
Cdd:PRK09493 77 QEAGMVFQQFYLFPHLTALENVMFG-----PLRVRGASKEEAEKQARELLAK-------VGLAERAHhypseLSGGQQQR 144
|
170 180
....*....|....*....|
gi 240256467 648 VNVGLEMVMEPSLLILDEPT 667
Cdd:PRK09493 145 VAIARALAVKPKLMLFDEPT 164
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
512-667 |
3.53e-06 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 50.98 E-value: 3.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 512 NKHLMRC--VTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCiMTGMILVNGKVESI----QSYKKIIGFVPQDDIVH 585
Cdd:TIGR02633 270 NPHRKRVddVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK-FEGNVFINGKPVDIrnpaQAIRAGIAMVPEDRKRH 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 586 G---------NLTVEENLWFSARCRLpaDLPKPEKVlvVERVIESLGLQHVRDSLVGTvekrGISGGQRKRVNVGLEMVM 656
Cdd:TIGR02633 349 GivpilgvgkNITLSVLKSFCFKMRI--DAAAELQI--IGSAIQRLKVKTASPFLPIG----RLSGGNQQKAVLAKMLLT 420
|
170
....*....|.
gi 240256467 657 EPSLLILDEPT 667
Cdd:TIGR02633 421 NPRVLILDEPT 431
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
470-667 |
3.79e-06 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 50.05 E-value: 3.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 470 MQEQNKNLTFsgvismandIDIRKRPMIEVAFKDLSITLKGknkhlmrcvtgklspGRVSAVMGPSGAGKTTFLTALTG- 548
Cdd:PRK13637 1 MSIKIENLTH---------IYMEGTPFEKKALDNVNIEIED---------------GEFVGLIGHTGSGKSTLIQHLNGl 56
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 549 -KApgciMTGMILVNG-----KVESIQSYKKIIGFVPQ------------DDIVHG--NLTVEENLwfsarcrlpadlpk 608
Cdd:PRK13637 57 lKP----TSGKIIIDGvditdKKVKLSDIRKKVGLVFQypeyqlfeetieKDIAFGpiNLGLSEEE-------------- 118
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 240256467 609 pekvlVVERVIESLglqhvrdSLVG----TVEKRG---ISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK13637 119 -----IENRVKRAM-------NIVGldyeDYKDKSpfeLSGGQKRRVAIAGVVAMEPKILILDEPT 172
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
493-666 |
4.82e-06 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 49.26 E-value: 4.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 493 KRPMIEVafKDLSITLKgkNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCIMTGMILVNGkvESI---- 568
Cdd:CHL00131 4 NKPILEI--KNLHASVN--ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKG--ESIldle 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 569 ---QSYKKI-IGFvpQDDIVHGNLTVEENLWFSARCRLPA-DLPKPEKVLVVERVIESLGLQHVRDSLVGTVEKRGISGG 643
Cdd:CHL00131 78 peeRAHLGIfLAF--QYPIEIPGVSNADFLRLAYNSKRKFqGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGG 155
|
170 180
....*....|....*....|....
gi 240256467 644 QRKRvNVGLEM-VMEPSLLILDEP 666
Cdd:CHL00131 156 EKKR-NEILQMaLLDSELAILDET 178
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
522-667 |
5.20e-06 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 49.73 E-value: 5.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 522 KLSPGRVSAVMGPSGAGKTTFLTALTG---KAPGCIMTGMILVNG--KVESIQSYKKIIGFV---PQDDIVHGnlTVEEN 593
Cdd:PRK13643 28 EVKKGSYTALIGHTGSGKSTLLQHLNGllqPTEGKVTVGDIVVSStsKQKEIKPVRKKVGVVfqfPESQLFEE--TVLKD 105
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 240256467 594 LWFSARcrlPADLPKPEKVLVVERVIESLGLQHvrdslvGTVEKR--GISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK13643 106 VAFGPQ---NFGIPKEKAEKIAAEKLEMVGLAD------EFWEKSpfELSGGQMRRVAIAGILAMEPEVLVLDEPT 172
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
525-667 |
5.44e-06 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 50.59 E-value: 5.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 525 PGRVSAVMGPSGAGKTTfLTAL-------TGkapgcimtGMILVNG----KVeSIQSYKKIIGFVPQDdIVHGNLTVEEN 593
Cdd:COG5265 383 AGKTVAIVGPSGAGKST-LARLlfrfydvTS--------GRILIDGqdirDV-TQASLRAAIGIVPQD-TVLFNDTIAYN 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 594 LWFSarcRLPADlpkPEKVLVVERV------IESL--GLqhvrDSLVGtveKRG--ISGGQRKRVNVGLEMVMEPSLLIL 663
Cdd:COG5265 452 IAYG---RPDAS---EEEVEAAARAaqihdfIESLpdGY----DTRVG---ERGlkLSGGEKQRVAIARTLLKNPPILIF 518
|
....
gi 240256467 664 DEPT 667
Cdd:COG5265 519 DEAT 522
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
485-667 |
5.48e-06 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 49.26 E-value: 5.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 485 MANDIDIRKrPMIEVafKDLSITLKgkNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFL------TALTgkaPGCIMTGM 558
Cdd:COG1117 1 MTAPASTLE-PKIEV--RNLNVYYG--DKQALKDINLDIPENKVTALIGPSGCGKSTLLrclnrmNDLI---PGARVEGE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 559 ILVNGkvESIQSyKKI--------IGFVPQddivHGN---LTVEENLWFSArcRLPADLPKPEKVLVVERVIESLGL-QH 626
Cdd:COG1117 73 ILLDG--EDIYD-PDVdvvelrrrVGMVFQ----KPNpfpKSIYDNVAYGL--RLHGIKSKSELDEIVEESLRKAALwDE 143
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 240256467 627 VRDSLvgtveKR---GISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:COG1117 144 VKDRL-----KKsalGLSGGQQQRLCIARALAVEPEVLLMDEPT 182
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
586-667 |
5.65e-06 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 50.51 E-value: 5.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 586 GNLTVEENLWFSARC-RLPADLPKPEkvlvVERVIESLGLQHVRDSLVGtvekrGISGGQRKRVNVGLEMVMEPSLLILD 664
Cdd:NF033858 352 GELTVRQNLELHARLfHLPAAEIAAR----VAEMLERFDLADVADALPD-----SLPLGIRQRLSLAVAVIHKPELLILD 422
|
...
gi 240256467 665 EPT 667
Cdd:NF033858 423 EPT 425
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
493-667 |
6.35e-06 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 48.98 E-value: 6.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 493 KRPMIEvaFKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGkapgcIM---TGMILVNGKVESIQ 569
Cdd:PRK13648 4 KNSIIV--FKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIG-----IEkvkSGEIFYNNQAITDD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 570 SYKKI---IGFV---PQDDIVHGnlTVEENLWFSARCRLpadLPKPEKVLVVERVIESLGLQHVRDSlvgtvEKRGISGG 643
Cdd:PRK13648 77 NFEKLrkhIGIVfqnPDNQFVGS--IVKYDVAFGLENHA---VPYDEMHRRVSEALKQVDMLERADY-----EPNALSGG 146
|
170 180
....*....|....*....|....
gi 240256467 644 QRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK13648 147 QKQRVAIAGVLALNPSVIILDEAT 170
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
506-666 |
7.22e-06 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 49.11 E-value: 7.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 506 ITLKGKNKHL-MRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGKVESIQSYKKIIGFVPQDDIV 584
Cdd:PRK15056 12 VTVTWRNGHTaLRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPTRQALQKNLVAYVPQSEEV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 585 HGNLTV-EENLWFSARCRLPADL--PKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLL 661
Cdd:PRK15056 90 DWSFPVlVEDVVMMGRYGHMGWLrrAKKRDRQIVTAALARVDMVEFRHRQIGE-----LSGGQKKRVFLARAIAQQGQVI 164
|
....*
gi 240256467 662 ILDEP 666
Cdd:PRK15056 165 LLDEP 169
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
502-665 |
7.58e-06 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 48.63 E-value: 7.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 502 KDLSITLKGKNkhLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCIMTGMILVNGkvesiqsyKKIIGFVPQD 581
Cdd:PRK09580 5 KDLHVSVEDKA--ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG--------KDLLELSPED 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 582 DIVHG-----NLTVE----ENLWF-------SARCRLPADLPKPEKVLVVERVIESLGLQhvRDSLVGTVEKrGISGGQR 645
Cdd:PRK09580 75 RAGEGifmafQYPVEipgvSNQFFlqtalnaVRSYRGQEPLDRFDFQDLMEEKIALLKMP--EDLLTRSVNV-GFSGGEK 151
|
170 180
....*....|....*....|.
gi 240256467 646 KRVNVgLEM-VMEPSLLILDE 665
Cdd:PRK09580 152 KRNDI-LQMaVLEPELCILDE 171
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
500-665 |
9.54e-06 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 47.91 E-value: 9.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 500 AFKDLSITLKGknkhlmrcvtgklspGRVSAVMGPSGAGKTTFLTALTGkapgcIM---TGMILVNGKVESIQSYKkiIG 576
Cdd:cd03220 37 ALKDVSFEVPR---------------GERIGLIGRNGAGKSTLLRLLAG-----IYppdSGTVTVRGRVSSLLGLG--GG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 577 FvpqddivHGNLTVEENLWFsaRCRLpADLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVM 656
Cdd:cd03220 95 F-------NPELTGRENIYL--NGRL-LGLSRKEIDEKIDEIIEFSELGDFIDLPVKT-----YSSGMKARLAFAIATAL 159
|
....*....
gi 240256467 657 EPSLLILDE 665
Cdd:cd03220 160 EPDILLIDE 168
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
504-667 |
1.08e-05 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 48.09 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 504 LSITLKGKNK-----HLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALT-------------------GKAPGcimtgmi 559
Cdd:PRK11124 1 MSIQLNGINCfygahQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNllemprsgtlniagnhfdfSKTPS------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 560 lvngkVESIQSYKKIIGFVPQDDIVHGNLTVEENLwFSARCRLpADLPKPEKVLVVERVIESLGLQHVRDSLvgtveKRG 639
Cdd:PRK11124 74 -----DKAIRELRRNVGMVFQQYNLWPHLTVQQNL-IEAPCRV-LGLSKDQALARAEKLLERLRLKPYADRF-----PLH 141
|
170 180
....*....|....*....|....*...
gi 240256467 640 ISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK11124 142 LSGGQQQRVAIARALMMEPQVLLFDEPT 169
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
522-667 |
1.22e-05 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 49.05 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 522 KLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCIMTGMILVNG---KVESIQ-SYKKIIGFVPQDDIVHGNLTVEENLWFS 597
Cdd:TIGR02633 23 EVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGsplKASNIRdTERAGIVIIHQELTLVPELSVAENIFLG 102
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 240256467 598 ARCRLPADLPK-PEKVLVVERVIESLGLQHVRDSLvgTVEKRGisGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:TIGR02633 103 NEITLPGGRMAyNAMYLRAKNLLRELQLDADNVTR--PVGDYG--GGQQQLVEIAKALNKQARLLILDEPS 169
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
499-667 |
1.22e-05 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 48.19 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 499 VAFKDLSITLKgkNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTG-KAPGcimtgmilvNGKVESIQSYKkiIGF 577
Cdd:PRK09544 5 VSLENVSVSFG--QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGlVAPD---------EGVIKRNGKLR--IGY 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 578 VPQDdiVHGNLTVEenLWFSARCRLPADLPKPEKVLVVERVIESLGLQHVRDSLvgtvekrgiSGGQRKRVNVGLEMVME 657
Cdd:PRK09544 72 VPQK--LYLDTTLP--LTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKL---------SGGETQRVLLARALLNR 138
|
170
....*....|
gi 240256467 658 PSLLILDEPT 667
Cdd:PRK09544 139 PQLLVLDEPT 148
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
498-695 |
1.34e-05 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 49.01 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 498 EVAFKDLSITLKGKNKhlMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGKVESIQS----YKK 573
Cdd:PRK09700 263 ETVFEVRNVTSRDRKK--VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRSpldaVKK 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 574 IIGFVPQ---DDIVHGNLTVEENLWFSarcrlpadlpkpeKVLVVERVIESLGLQHVRDSLVGTVEKRG----------- 639
Cdd:PRK09700 339 GMAYITEsrrDNGFFPNFSIAQNMAIS-------------RSLKDGGYKGAMGLFHEVDEQRTAENQREllalkchsvnq 405
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 640 ----ISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMV 695
Cdd:PRK09700 406 niteLSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMV 465
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
519-667 |
1.40e-05 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 48.17 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 519 VTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGciMTGMILVNGK---VESIQSYKKIIGFVPQD-DIVHGNLTVEENL 594
Cdd:PRK13642 26 VSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGElltAENVWNLRRKIGMVFQNpDNQFVGATVEDDV 103
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 240256467 595 WFSARCRlpaDLPKPEkvlVVERVIESLGLQHVRDslVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK13642 104 AFGMENQ---GIPREE---MIKRVDEALLAVNMLD--FKTREPARLSGGQKQRVAVAGIIALRPEIIILDEST 168
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
494-666 |
1.41e-05 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 48.06 E-value: 1.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 494 RPMIEVafKDLSITLKGknkhlMRCVTG---KLSPGRVSAVMGPSGAGKTTFLTALTG--KAPGcimtGMILVNGK-VES 567
Cdd:PRK11300 3 QPLLSV--SGLMMRFGG-----LLAVNNvnlEVREQEIVSLIGPNGAGKTTVFNCLTGfyKPTG----GTILLRGQhIEG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 568 IQSYK-KIIGFVP--QDDIVHGNLTVEENL-----------WFSARCRLPADLPKPEKVLvvERV---IESLGLQHVRDS 630
Cdd:PRK11300 72 LPGHQiARMGVVRtfQHVRLFREMTVIENLlvaqhqqlktgLFSGLLKTPAFRRAESEAL--DRAatwLERVGLLEHANR 149
|
170 180 190
....*....|....*....|....*....|....*.
gi 240256467 631 LVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:PRK11300 150 QAGN-----LAYGQQRRLEIARCMVTQPEILMLDEP 180
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
514-729 |
1.53e-05 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 49.01 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 514 HLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCimTGMILVNG----KVESIQSYKKIIGFVPQDDIVHGNLT 589
Cdd:PRK09700 19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT--KGTITINNinynKLDHKLAAQLGIGIIYQELSVIDELT 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 590 VEENLWFSarcRLPAdlpkpEKVLVV------------ERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVME 657
Cdd:PRK09700 97 VLENLYIG---RHLT-----KKVCGVniidwremrvraAMMLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLD 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 240256467 658 PSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVVHQpsYTLFRMFDDLILLAKGGLICYQGPVKKVE 729
Cdd:PRK09700 164 AKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHK--LAEIRRICDRYTVMKDGSSVCSGMVSDVS 233
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
556-667 |
1.87e-05 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 49.26 E-value: 1.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 556 TGMILVNGkVE----SIQSYKKIIGFVPQDDIVHgNLTVEENLWFSARCRLPADLPKPEKVLVVERVIESLGLQHvrDSL 631
Cdd:PTZ00265 1276 SGKILLDG-VDicdyNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKY--DTN 1351
|
90 100 110
....*....|....*....|....*....|....*.
gi 240256467 632 VGTVEKrGISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PTZ00265 1352 VGPYGK-SLSGGQKQRIAIARALLREPKILLLDEAT 1386
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
496-667 |
1.98e-05 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 47.77 E-value: 1.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 496 MIEVafKDLSIT---------LKGKNKHLMRC-------VTG---KLSPGRVSAVMGPSGAGKTTFLTALTGkapgcIMT 556
Cdd:COG4586 1 IIEV--ENLSKTyrvyekepgLKGALKGLFRReyreveaVDDisfTIEPGEIVGFIGPNGAGKSTTIKMLTG-----ILV 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 557 ---GMILVNGKV--ESIQSYKKIIGFVpqddivHGNLTveeNLWFSarcrLPA-----------DLPKPEKVLVVERVIE 620
Cdd:COG4586 74 ptsGEVRVLGYVpfKRRKEFARRIGVV------FGQRS---QLWWD----LPAidsfrllkaiyRIPDAEYKKRLDELVE 140
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 240256467 621 SLGLQHVRDSLVgtvekRGISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:COG4586 141 LLDLGELLDTPV-----RQLSLGQRMRCELAAALLHRPKILFLDEPT 182
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
521-667 |
2.42e-05 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 48.24 E-value: 2.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 521 GKLSPGRVSAVMGPSGAGKTTFLTALTG--KAPgcimTGMILVNGKVesiqSYKkiigfvPQ---DDIvhgNLTVEENLW 595
Cdd:COG1245 361 GEIREGEVLGIVGPNGIGKTTFAKILAGvlKPD----EGEVDEDLKI----SYK------PQyisPDY---DGTVEEFLR 423
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 240256467 596 FSARCRLPADLPKPEkvlvverVIESLGLQHVRDSLVgtvekRGISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:COG1245 424 SANTDDFGSSYYKTE-------IIKPLGLEKLLDKNV-----KDLSGGELQRVAIAACLSRDADLYLLDEPS 483
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
494-667 |
2.44e-05 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 47.04 E-value: 2.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 494 RPMIEVafKDLSITLKGKNK--HLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTG-KAPGcimTGMILVNGkvESIQS 570
Cdd:COG4181 6 APIIEL--RGLTKTVGTGAGelTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGlDRPT---SGTVRLAG--QDLFA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 571 Y---------KKIIGFVPQDDIVHGNLTVEENLwfsarcRLPADL---PKPEKVlvVERVIESLGLQHVRDSLvgtveKR 638
Cdd:COG4181 79 LdedararlrARHVGFVFQSFQLLPTLTALENV------MLPLELagrRDARAR--ARALLERVGLGHRLDHY-----PA 145
|
170 180
....*....|....*....|....*....
gi 240256467 639 GISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:COG4181 146 QLSGGEQQRVALARAFATEPAILFADEPT 174
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
510-667 |
2.46e-05 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 48.58 E-value: 2.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 510 GKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTG-KAPGcimTGMILVNGKVES---IQSYKKIIGFVPQDDIVH 585
Cdd:TIGR01193 484 GYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGfFQAR---SGEILLNGFSLKdidRHTLRQFINYLPQEPYIF 560
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 586 GNlTVEENLWFSARCRLPADlpkpeKVLVVERVIE--------SLGLQhvrDSLvgTVEKRGISGGQRKRVNVGLEMVME 657
Cdd:TIGR01193 561 SG-SILENLLLGAKENVSQD-----EIWAACEIAEikddienmPLGYQ---TEL--SEEGSSISGGQKQRIALARALLTD 629
|
170
....*....|
gi 240256467 658 PSLLILDEPT 667
Cdd:TIGR01193 630 SKVLILDEST 639
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
525-667 |
2.52e-05 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 48.08 E-value: 2.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 525 PGRVSAVMGPSGAGKTTFLTALTGkapgcIMT---GMILVNGKVESI----QSYKKIIGFVPQDDIVHGNLTVEENLwFS 597
Cdd:PRK10762 29 PGRVMALVGENGAGKSTMMKVLTG-----IYTrdaGSILYLGKEVTFngpkSSQEAGIGIIHQELNLIPQLTIAENI-FL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 598 ARcrlpadlpkpEKVLVVERV------------IESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDE 665
Cdd:PRK10762 103 GR----------EFVNRFGRIdwkkmyaeadklLARLNLRFSSDKLVGE-----LSIGEQQMVEIAKVLSFESKVIIMDE 167
|
..
gi 240256467 666 PT 667
Cdd:PRK10762 168 PT 169
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
519-667 |
2.77e-05 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 47.39 E-value: 2.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 519 VTGKLSPGRVSAVMGPSGAGKTTF---LTAL----TG------------KAPGCIMTGMILVN------GKVESIQSYKK 573
Cdd:PRK13651 26 VSVEINQGEFIAIIGQTGSGKTTFiehLNALllpdTGtiewifkdeknkKKTKEKEKVLEKLViqktrfKKIKKIKEIRR 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 574 IIGFVPQddIVHGNL---TVEENLWFSARcrlPADLPKPEKVLVVERVIESLGLQhvrdslVGTVEKR--GISGGQRKRV 648
Cdd:PRK13651 106 RVGVVFQ--FAEYQLfeqTIEKDIIFGPV---SMGVSKEEAKKRAAKYIELVGLD------ESYLQRSpfELSGGQKRRV 174
|
170
....*....|....*....
gi 240256467 649 NVGLEMVMEPSLLILDEPT 667
Cdd:PRK13651 175 ALAGILAMEPDFLVFDEPT 193
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
525-667 |
2.81e-05 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 47.98 E-value: 2.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 525 PGRVSAVMGPSGAGKTTFLTALTG-KAPGcimTGMILVNGK-------VESIQSYKKII----GFVPqddivhgNLTVEE 592
Cdd:PRK11288 29 AGQVHALMGENGAGKSTLLKILSGnYQPD---AGSILIDGQemrfastTAALAAGVAIIyqelHLVP-------EMTVAE 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 240256467 593 NLWFSarcRLPADLPKPEKVLVVERVIESlgLQHVRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK11288 99 NLYLG---QLPHKGGIVNRRLLNYEAREQ--LEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPT 168
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
519-667 |
4.13e-05 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 46.66 E-value: 4.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 519 VTGKLSPGRVSAVMGPSGAGKTTFLTALTG-KAPgciMTGMILVNGKV-------ESIQSYKKIIGFV---PQDDIVHGn 587
Cdd:PRK13649 26 VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGlHVP---TQGSVRVDDTLitstsknKDIKQIRKKVGLVfqfPESQLFEE- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 588 lTVEENLWFSarcrlpadlpkPEKVLVVERVIESLGLQHVRdsLVGTVEKR------GISGGQRKRVNVGLEMVMEPSLL 661
Cdd:PRK13649 102 -TVLKDVAFG-----------PQNFGVSQEEAEALAREKLA--LVGISESLfeknpfELSGGQMRRVAIAGILAMEPKIL 167
|
....*.
gi 240256467 662 ILDEPT 667
Cdd:PRK13649 168 VLDEPT 173
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
526-743 |
4.19e-05 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 46.94 E-value: 4.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 526 GRVSAVMGPSGAGKTTFLTALTG---KAPGCIMTG--MILVNGKVESIQSYKKIIGFV---PQDDIVHGnlTVEENLWFS 597
Cdd:PRK13634 33 GSYVAIIGHTGSGKSTLLQHLNGllqPTSGTVTIGerVITAGKKNKKLKPLRKKVGIVfqfPEHQLFEE--TVEKDICFG 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 598 arcrlPAD--LPKPEKVLVVERVIESLGLQHvrdslvgTVEKRG---ISGGQRKRVNVGLEMVMEPSLLILDEPTsglds 672
Cdd:PRK13634 111 -----PMNfgVSEEDAKQKAREMIELVGLPE-------ELLARSpfeLSGGQMRRVAIAGVLAMEPEVLVLDEPT----- 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 673 sssQLLLRALRREALE---------GVNICMVVHQ----PSYTlfrmfDDLILLAKGGLICYQGPvkkvEEYFS------ 733
Cdd:PRK13634 174 ---AGLDPKGRKEMMEmfyklhkekGLTTVLVTHSmedaARYA-----DQIVVMHKGTVFLQGTP----REIFAdpdele 241
|
250
....*....|
gi 240256467 734 SLGIVVPERV 743
Cdd:PRK13634 242 AIGLDLPETV 251
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
493-667 |
5.01e-05 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 46.52 E-value: 5.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 493 KRPMIEvaFKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTG--KAPGcimtGMILVNGKV---ES 567
Cdd:PRK13632 4 KSVMIK--VENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGllKPQS----GEIKIDGITiskEN 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 568 IQSYKKIIGFVPQ--DDIVHGnLTVEENLWFSarcrLPADLPKPEKVlvvERVIESLGLQhvrdslVGTV-----EKRGI 640
Cdd:PRK13632 78 LKEIRKKIGIIFQnpDNQFIG-ATVEDDIAFG----LENKKVPPKKM---KDIIDDLAKK------VGMEdyldkEPQNL 143
|
170 180
....*....|....*....|....*..
gi 240256467 641 SGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK13632 144 SGGQKQRVAIASVLALNPEIIIFDEST 170
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
499-735 |
5.34e-05 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 45.84 E-value: 5.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 499 VAFKDLSITLKgknkhlmrcvtgklsPGRVSAVMGPSGAGKTTFLTALTGkapgcIM---TGMILVNGKVESiqsykkII 575
Cdd:COG1134 40 WALKDVSFEVE---------------RGESVGIIGRNGAGKSTLLKLIAG-----ILeptSGRVEVNGRVSA------LL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 576 ----GFvpqddivHGNLTVEENLWFsaRCRLpADLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVG 651
Cdd:COG1134 94 elgaGF-------HPELTGRENIYL--NGRL-LGLSRKEIDEKFDEIVEFAELGDFIDQPVKT-----YSSGMRARLAFA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 652 LEMVMEPSLLILDeptsgldssssqlllralrrEAL--------------------EGVNICMVVHQPSyTLFRMFDDLI 711
Cdd:COG1134 159 VATAVDPDILLVD--------------------EVLavgdaafqkkclarirelreSGRTVIFVSHSMG-AVRRLCDRAI 217
|
250 260
....*....|....*....|....*
gi 240256467 712 LLAKGGLIcYQGPVKKV-EEYFSSL 735
Cdd:COG1134 218 WLEKGRLV-MDGDPEEViAAYEALL 241
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
490-667 |
6.15e-05 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 45.95 E-value: 6.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 490 DIRKRpmievaFKDLSItLKGknkhlmrcVTGKLSPGRVSAVMGPSGAGKTTFLTaltgkapgCI------MTGMILVNG 563
Cdd:COG4598 13 DLHKS------FGDLEV-LKG--------VSLTARKGDVISIIGSSGSGKSTFLR--------CInlletpDSGEIRVGG 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 564 -------------------KVESIQSYkkiIGFVPQddivHGNL----TVEENLWFSARCRLpaDLPKPEKVLVVERVIE 620
Cdd:COG4598 70 eeirlkpdrdgelvpadrrQLQRIRTR---LGMVFQ----SFNLwshmTVLENVIEAPVHVL--GRPKAEAIERAEALLA 140
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 240256467 621 SLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:COG4598 141 KVGLADKRDAYPAH-----LSGGQQQRAAIARALAMEPEVMLFDEPT 182
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
526-667 |
7.88e-05 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 46.72 E-value: 7.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 526 GRVSAVMGPSGAGKTTFLTALTGKAPG-----CIMTGMILVN---------GKVesiqsyKKIIGFVPQDDIVHGNLTVE 591
Cdd:TIGR03269 310 GEIFGIVGTSGAGKTTLSKIIAGVLEPtsgevNVRVGDEWVDmtkpgpdgrGRA------KRYIGILHQEYDLYPHRTVL 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 592 ENLWFSARCRLPADLPKPEKVLVV------ERVIESLgLQHVRDSLvgtvekrgiSGGQRKRVNVGLEMVMEPSLLILDE 665
Cdd:TIGR03269 384 DNLTEAIGLELPDELARMKAVITLkmvgfdEEKAEEI-LDKYPDEL---------SEGERHRVALAQVLIKEPRIVILDE 453
|
..
gi 240256467 666 PT 667
Cdd:TIGR03269 454 PT 455
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
519-667 |
7.90e-05 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 45.25 E-value: 7.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 519 VTGKLSPGRVSAVMGPSGAGKTTFLTALTG-KAPGcimTGMILVNG------KVESIQSYKKIIGFVPQDDIVHGNLTVE 591
Cdd:PRK10908 21 VTFHMRPGEMAFLTGHSGAGKSTLLKLICGiERPS---AGKIWFSGhditrlKNREVPFLRRQIGMIFQDHHLLMDRTVY 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 592 ENlwfsarcrlpadlpkpekvLVVERVIESLGLQHVRDSLVGTVEKRG-----------ISGGQRKRVNVGLEMVMEPSL 660
Cdd:PRK10908 98 DN-------------------VAIPLIIAGASGDDIRRRVSAALDKVGlldkaknfpiqLSGGEQQRVGIARAVVNKPAV 158
|
....*..
gi 240256467 661 LILDEPT 667
Cdd:PRK10908 159 LLADEPT 165
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
519-666 |
9.19e-05 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 45.71 E-value: 9.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 519 VTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGK-------VESIQSYKKIIGFVPQDDIVHGNLTVE 591
Cdd:cd03294 43 VSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQdiaamsrKELRELRRKKISMVFQSFALLPHRTVL 120
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 240256467 592 ENLWFSARCRlpaDLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:cd03294 121 ENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPDE-----LSGGMQQRVGLARALAVDPDILLMDEA 187
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
480-667 |
9.27e-05 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 46.36 E-value: 9.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 480 SGVISMA---NDIdIRKRPMIE-------------VAFKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFL 543
Cdd:PRK11160 305 GQVIASArriNEI-TEQKPEVTfpttstaaadqvsLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLL 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 544 TALTgKAPGCImTGMILVNGKveSIQSY-----KKIIGFVPQDdiVH-GNLTVEENLwfsarcRLPADLPKPEKVL-VVE 616
Cdd:PRK11160 384 QLLT-RAWDPQ-QGEILLNGQ--PIADYseaalRQAISVVSQR--VHlFSATLRDNL------LLAAPNASDEALIeVLQ 451
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 617 RVieslGLqhvrDSLVGTVEK---------RGISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK11160 452 QV----GL----EKLLEDDKGlnawlgeggRQLSGGEQRRLGIARALLHDAPLLLLDEPT 503
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
519-667 |
9.32e-05 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 45.31 E-value: 9.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 519 VTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGcimTGMILVNGKveSIQSYK-----KIIGFVPQDDIVHGNLTVEEN 593
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQ--PLEAWSaaelaRHRAYLSQQQTPPFAMPVFQY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 594 LWFSarcrLPADLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVN-VGLEMVMEPS------LLILDEP 666
Cdd:PRK03695 90 LTLH----QPDKTRTEAVASALNEVAEALGLDDKLGRSVNQ-----LSGGEWQRVRlAAVVLQVWPDinpagqLLLLDEP 160
|
.
gi 240256467 667 T 667
Cdd:PRK03695 161 M 161
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
496-667 |
1.66e-04 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 45.18 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 496 MIEvaFKDLSIT--LKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTaltgkapgCI------MTGMILVNG---- 563
Cdd:PRK11153 1 MIE--LKNISKVfpQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIR--------CInllerpTSGRVLVDGqdlt 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 564 --KVESIQSYKKIIGFVPQddivHGNL----TVEENLwfsarcRLPADLPKPEKVLVVERVIESLglqhvrdSLVGTVEK 637
Cdd:PRK11153 71 alSEKELRKARRQIGMIFQ----HFNLlssrTVFDNV------ALPLELAGTPKAEIKARVTELL-------ELVGLSDK 133
|
170 180 190
....*....|....*....|....*....|....*
gi 240256467 638 RG-----ISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK11153 134 ADrypaqLSGGQKQRVAIARALASNPKVLLCDEAT 168
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
506-758 |
1.75e-04 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 45.56 E-value: 1.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 506 ITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCIMTGMILVNGKVESIQSYKKIIGFVPQDDIVH 585
Cdd:TIGR03269 6 LTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVC 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 586 GN-LTVEE-NLWFSARcRLPADLPKPEKVL------------VVERVIESLG----------------LQHVRDSLVGTV 635
Cdd:TIGR03269 86 GGtLEPEEvDFWNLSD-KLRRRIRKRIAIMlqrtfalygddtVLDNVLEALEeigyegkeavgravdlIEMVQLSHRITH 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 636 EKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALrREALEGVNICMVV--HQPSyTLFRMFDDLILL 713
Cdd:TIGR03269 165 IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNAL-EEAVKASGISMVLtsHWPE-VIEDLSDKAIWL 242
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 240256467 714 AKGGLICYQGPVKKVEEYFSSLGIVVPER-----------VNPPDYYIDILEGILK 758
Cdd:TIGR03269 243 ENGEIKEEGTPDEVVAVFMEGVSEVEKECevevgepiikvRNVSKRYISVDRGVVK 298
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
523-665 |
1.76e-04 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 44.80 E-value: 1.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 523 LSPGRVSAVMGPSGAGKTTF---LTALTGKAPGCI-MTGMILVNGKVESIQSYKKIIGFVPQDDI--VHGNLTVEENLwf 596
Cdd:TIGR02769 34 IEEGETVGLLGRSGCGKSTLarlLLGLEKPAQGTVsFRGQDLYQLDRKQRRAFRRDVQLVFQDSPsaVNPRMTVRQII-- 111
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 240256467 597 SARCRLPADLPKPEKVlvvERVIESLGLQHVRDSLVGTVeKRGISGGQRKRVNVGLEMVMEPSLLILDE 665
Cdd:TIGR02769 112 GEPLRHLTSLDESEQK---ARIAELLDMVGLRSEDADKL-PRQLSGGQLQRINIARALAVKPKLIVLDE 176
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
515-729 |
1.78e-04 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 44.82 E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 515 LMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCIMTGMILVNGKVEsiqsykkiIGFVPQDDIVHGNLTveenl 594
Cdd:PRK13547 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVT--------LNGEPLAAIDAPRLA----- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 595 wfsarcRLPADLP---KPEKVLVVeRVIESLG-LQHVRDSLVGTVEKRGI---------------------SGGQRKRVN 649
Cdd:PRK13547 83 ------RLRAVLPqaaQPAFAFSA-REIVLLGrYPHARRAGALTHRDGEIawqalalagatalvgrdvttlSGGELARVQ 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 650 VGL---------EMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICMVVHQPSYTLfRMFDDLILLAKGGLI 719
Cdd:PRK13547 156 FARvlaqlwpphDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDwNLGVLAIVHDPNLAA-RHADRIAMLADGAIV 234
|
250 260
....*....|....*....|....*.
gi 240256467 720 ----------------CYQGPVKKVE 729
Cdd:PRK13547 235 ahgapadvltpahiarCYGFAVRLVD 260
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
641-667 |
2.11e-04 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 45.06 E-value: 2.11e-04
10 20
....*....|....*....|....*..
gi 240256467 641 SGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:COG4172 427 SGGQRQRIAIARALILEPKLLVLDEPT 453
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
531-666 |
2.29e-04 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 44.83 E-value: 2.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 531 VM-GPSGAGKTTFLTALTGKAPgcIMTGMILVNGKV----EsiqsykkiigfvPQD-DI--VHGN------LTVEENLWF 596
Cdd:PRK11650 34 VLvGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVvnelE------------PADrDIamVFQNyalyphMSVRENMAY 99
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 597 SARCRlpaDLPKPEKVLVVERVIESLGLQHVRDSlvgtvEKRGISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:PRK11650 100 GLKIR---GMPKAEIEERVAEAARILELEPLLDR-----KPRELSGGQRQRVAMGRAIVREPAVFLFDEP 161
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
519-666 |
2.86e-04 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 43.47 E-value: 2.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 519 VTGKLSPGRVSAVMGPSGAGKTTFLTALTGKapgcimtgMILVNGKVESIQSYKKIIGFVPQDDIVHG------------ 586
Cdd:cd03290 20 INIRIPTGQLTMIVGQVGCGKSSLLLAILGE--------MQTLEGKVHWSNKNESEPSFEATRSRNRYsvayaaqkpwll 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 587 NLTVEENLWFSArcrlpadlpkPEKVLVVERVIESLGLQHVRDSL----VGTVEKRGI--SGGQRKRVNVGLEMVMEPSL 660
Cdd:cd03290 92 NATVEENITFGS----------PFNKQRYKAVTDACSLQPDIDLLpfgdQTEIGERGInlSGGQRQRICVARALYQNTNI 161
|
....*.
gi 240256467 661 LILDEP 666
Cdd:cd03290 162 VFLDDP 167
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
530-667 |
2.97e-04 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 43.95 E-value: 2.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 530 AVMGPSGAGKTTFLTALTG--KAPgcimTGMILVNGKV---ESIQSYKKIIGFV---PQDDIVhgNLTVEENLWFSARCR 601
Cdd:PRK13650 37 SIIGHNGSGKSTTVRLIDGllEAE----SGQIIIDGDLlteENVWDIRHKIGMVfqnPDNQFV--GATVEDDVAFGLENK 110
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 240256467 602 lpaDLPKPEkvlVVERVIESLGLQHVRDslVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK13650 111 ---GIPHEE---MKERVNEALELVGMQD--FKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEAT 168
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
481-667 |
3.05e-04 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 43.25 E-value: 3.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 481 GVISMaNDIDIRKRPMIEVAFKDLSITLKGKNKhlmrcvtgklspgrvSAVMGPSGAGKTTFLTALTGKAPGCimTGMIL 560
Cdd:cd03244 1 GDIEF-KNVSLRYRPNLPPVLKNISFSIKPGEK---------------VGIVGRTGSGKSSLLLALFRLVELS--SGSIL 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 561 VNGK-VESI--QSYKKIIGFVPQDDIVHGNlTVEENLwfsarcrLPADLPKPEKVL-VVERV-----IESLGLQHvrDSL 631
Cdd:cd03244 63 IDGVdISKIglHDLRSRISIIPQDPVLFSG-TIRSNL-------DPFGEYSDEELWqALERVglkefVESLPGGL--DTV 132
|
170 180 190
....*....|....*....|....*....|....*.
gi 240256467 632 VgTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:cd03244 133 V-EEGGENLSVGQRQLLCLARALLRKSKILVLDEAT 167
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
522-667 |
4.04e-04 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 44.54 E-value: 4.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 522 KLSPGRVSAVMGPSGAGKTTFLTALTGKA---PGCIMTGmilvngkvESIQsykkiIGFVPQDdivHGNLTVEENLWfsa 598
Cdd:TIGR03719 344 KLPPGGIVGVIGPNGAGKSTLFRMITGQEqpdSGTIEIG--------ETVK-----LAYVDQS---RDALDPNKTVW--- 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 599 rcrlpadlpkpEKVlvvervieSLGLQHVRdslVGTVE------------------KR--GISGGQRKRVNVGLEMVMEP 658
Cdd:TIGR03719 405 -----------EEI--------SGGLDIIK---LGKREipsrayvgrfnfkgsdqqKKvgQLSGGERNRVHLAKTLKSGG 462
|
....*....
gi 240256467 659 SLLILDEPT 667
Cdd:TIGR03719 463 NVLLLDEPT 471
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
519-666 |
4.15e-04 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 44.55 E-value: 4.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 519 VTGKLSPGRVSAVMGPSGAGKTTFLTALTGKapgcimtgMILVNGKVesiqSYKKIIGFVPQDDIVHgNLTVEENLWFSa 598
Cdd:TIGR00957 657 ITFSIPEGALVAVVGQVGCGKSSLLSALLAE--------MDKVEGHV----HMKGSVAYVPQQAWIQ-NDSLRENILFG- 722
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 240256467 599 rcrlpadlpKPEKVLVVERVIESLGLQHVRDSLVG----TVEKRGI--SGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:TIGR00957 723 ---------KALNEKYYQQVLEACALLPDLEILPSgdrtEIGEKGVnlSGGQKQRVSLARAVYSNADIYLFDDP 787
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
512-667 |
4.51e-04 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 44.15 E-value: 4.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 512 NKHLMRC--VTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGcIMTGMILVNGKVESI----QSYKKIIGFVPQDDIVH 585
Cdd:PRK13549 272 NPHIKRVddVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIrnpqQAIAQGIAMVPEDRKRD 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 586 G---NLTVEENLWFSARCRL--PADLPKPEKVLVVERVIESLglqHVRDSlvgTVEKR--GISGGQRKRVNVGLEMVMEP 658
Cdd:PRK13549 351 GivpVMGVGKNITLAALDRFtgGSRIDDAAELKTILESIQRL---KVKTA---SPELAiaRLSGGNQQKAVLAKCLLLNP 424
|
....*....
gi 240256467 659 SLLILDEPT 667
Cdd:PRK13549 425 KILILDEPT 433
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
641-667 |
4.84e-04 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 43.93 E-value: 4.84e-04
10 20
....*....|....*....|....*..
gi 240256467 641 SGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK15134 427 SGGQRQRIAIARALILKPSLIILDEPT 453
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
519-667 |
6.01e-04 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 42.78 E-value: 6.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 519 VTGKLSPGRVSAVMGPSGAGKTTFLTALTGK-APgciMTGMILVNGK---VESIQSYKKIIGFVPQDDIVHGNlTVEENL 594
Cdd:PRK10247 26 ISFSLRAGEFKLITGPSGCGKSTLLKIVASLiSP---TSGTLLFEGEdisTLKPEIYRQQVSYCAQTPTLFGD-TVYDNL 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 240256467 595 WFSARCRlpADLPKPEKVLvverviESLglqhVRDSLVGTVEKRGI---SGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK10247 102 IFPWQIR--NQQPDPAIFL------DDL----ERFALPDTILTKNIaelSGGEKQRISLIRNLQFMPKVLLLDEIT 165
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
519-667 |
6.44e-04 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 41.65 E-value: 6.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 519 VTGKLSPGRVSAVMGPSGAGKTTFLTALTG-KAPGcimTGMILVNGKVESIQSykkiigfvPQDDIVHGnltveenlwfs 597
Cdd:cd03216 19 VSLSVRRGEVHALLGENGAGKSTLMKILSGlYKPD---SGEILVDGKEVSFAS--------PRDARRAG----------- 76
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 598 arcrlpadlpkpekvlvvervieslglqhvrdslVGTVEKrgISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:cd03216 77 ----------------------------------IAMVYQ--LSVGERQMVEIARALARNARLLILDEPT 110
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
495-667 |
6.61e-04 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 43.52 E-value: 6.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 495 PMIEVafKDLSITLK--GKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTtfLTALT----GKAPGCIMTGMILVNGkvESI 568
Cdd:COG4172 5 PLLSV--EDLSVAFGqgGGTVEAVKGVSFDIAAGETLALVGESGSGKS--VTALSilrlLPDPAAHPSGSILFDG--QDL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 569 QSY-----KKI----IGFVPQD-----DIVHgnlTVE----ENLwfsarcRLPADLPKPEkvlVVERVIESLGLQHVRDS 630
Cdd:COG4172 79 LGLserelRRIrgnrIAMIFQEpmtslNPLH---TIGkqiaEVL------RLHRGLSGAA---ARARALELLERVGIPDP 146
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 240256467 631 lvgtvEKR------GISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:COG4172 147 -----ERRldayphQLSGGQRQRVMIAMALANEPDLLIADEPT 184
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
641-667 |
1.07e-03 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 42.04 E-value: 1.07e-03
10 20
....*....|....*....|....*..
gi 240256467 641 SGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:COG4778 154 SGGEQQRVNIARGFIADPPLLLLDEPT 180
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
509-665 |
1.17e-03 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 41.98 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 509 KGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTG-KAPGcimTGMILVNG------KVESIQSYKKIIGFVPQD 581
Cdd:PRK10419 21 KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGlESPS---QGNVSWRGeplaklNRAQRKAFRRDIQMVFQD 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 582 DI--VHGNLTVEENLwfSARCRLPADLPKPEKVlvvERVIESLGLQHVRDSLVgtvEKR--GISGGQRKRVNVGLEMVME 657
Cdd:PRK10419 98 SIsaVNPRKTVREII--REPLRHLLSLDKAERL---ARASEMLRAVDLDDSVL---DKRppQLSGGQLQRVCLARALAVE 169
|
....*...
gi 240256467 658 PSLLILDE 665
Cdd:PRK10419 170 PKLLILDE 177
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
500-667 |
1.31e-03 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 42.77 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 500 AFKDLSITLKgkNKHLMRCVTGKLS----PGRVSAVMGPSGAGKTtfLTALT-----GKAPGCIMTGMILVNGkvESI-- 568
Cdd:PRK15134 7 AIENLSVAFR--QQQTVRTVVNDVSlqieAGETLALVGESGSGKS--VTALSilrllPSPPVVYPSGDIRFHG--ESLlh 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 569 ---QSYKKI----IGFVPQDDIVHGN--LTVEENLWfsarcrlpadlpkpeKVLVVERvieSLGLQHVRDSLVGTVEKRG 639
Cdd:PRK15134 81 aseQTLRGVrgnkIAMIFQEPMVSLNplHTLEKQLY---------------EVLSLHR---GMRREAARGEILNCLDRVG 142
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 240256467 640 I--------------SGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK15134 143 IrqaakrltdyphqlSGGERQRVMIAMALLTRPELLIADEPT 184
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
510-667 |
1.73e-03 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 41.30 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 510 GKNKHLMRCVTGK---LSPGRVSAVMGPSGAGKTTFLTALTGKAPG----CIMTGMILVNGKVES-IQSYKKIIGFVPQD 581
Cdd:PRK10584 17 GQGEHELSILTGVelvVKRGETIALIGESGSGKSTLLAILAGLDDGssgeVSLVGQPLHQMDEEArAKLRAKHVGFVFQS 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 582 DIVHGNLTVEENLWFSARCRLPADlpKPEKVLVVErVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLL 661
Cdd:PRK10584 97 FMLIPTLNALENVELPALLRGESS--RQSRNGAKA-LLEQLGLGKRLDHLPAQ-----LSGGEQQRVALARAFNGRPDVL 168
|
....*.
gi 240256467 662 ILDEPT 667
Cdd:PRK10584 169 FADEPT 174
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
515-667 |
1.95e-03 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 40.70 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 515 LMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTG-KAPgciMTGMILVNGKV--ESIQSYKKIIGFVPQDDIVHGNLTVE 591
Cdd:PRK13540 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGlLNP---EKGEILFERQSikKDLCTYQKQLCFVGHRSGINPYLTLR 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 240256467 592 ENLWFsarcrlpaDLPKPEKVLVVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVgLEMVMEPS-LLILDEPT 667
Cdd:PRK13540 93 ENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYPCGL-----LSSGQKRQVAL-LRLWMSKAkLWLLDEPL 155
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
530-667 |
2.35e-03 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 41.80 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 530 AVMGPSGAGKTTFLTaltgkapgCIMTGMILVNGKVEsiQSYKKIIGFVPQDdivH-----GNLTVEEnlWFSaRCRLPA 604
Cdd:PRK15064 349 AIIGENGVGKTTLLR--------TLVGELEPDSGTVK--WSENANIGYYAQD---HaydfeNDLTLFD--WMS-QWRQEG 412
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 240256467 605 DLpkpekvlvvERVIES-LG-LQHVRDSLVGTVekRGISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK15064 413 DD---------EQAVRGtLGrLLFSQDDIKKSV--KVLSGGEKGRMLFGKLMMQKPNVLVMDEPT 466
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
519-666 |
2.40e-03 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 40.92 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 519 VTGKLSPGRVSAVMGPSGAGKTTFL---TALTGKAPGCIMTGMILVNGK------VESIQSYKKIiGFVPQDDIVHGNlT 589
Cdd:PRK14243 29 VWLDIPKNQITAFIGPSGCGKSTILrcfNRLNDLIPGFRVEGKVTFHGKnlyapdVDPVEVRRRI-GMVFQKPNPFPK-S 106
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 240256467 590 VEENLWFSARCR-LPADLPKpekvlVVERVIESLGL-QHVRDSLvgTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:PRK14243 107 IYDNIAYGARINgYKGDMDE-----LVERSLRQAALwDEVKDKL--KQSGLSLSGGQQQRLCIARAIAVQPEVILMDEP 178
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
513-666 |
2.64e-03 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 42.07 E-value: 2.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 513 KHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALtgkapgciMTGMILVNGKVESIQSykkiIGFVPQDDIVHgNLTVEE 592
Cdd:PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSL--------LSQFEISEGRVWAERS----IAYVPQQAWIM-NATVRG 739
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 240256467 593 NLWFSARCRlPADLPKPEKVLVVERVIESLGlqhvrDSLVGTVEKRGI--SGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:PTZ00243 740 NILFFDEED-AARLADAVRVSQLEADLAQLG-----GGLETEIGEKGVnlSGGQKARVSLARAVYANRDVYLLDDP 809
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
521-667 |
2.65e-03 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 40.85 E-value: 2.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 521 GKLSPGRVSAVMGPSGAGKTTFLTALTGkapgcimtgmiLVNGKVESIQSYKKIIGFVPQDDIVHGNLTVEENLWFSARC 600
Cdd:cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAG-----------VLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKD 88
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 240256467 601 RLPADLPKPEkvlvverVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:cd03237 89 FYTHPYFKTE-------IAKPLQIEQILDREVPE-----LSGGELQRVAIAACLSKDADIYLLDEPS 143
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
495-667 |
3.28e-03 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 41.53 E-value: 3.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 495 PMIEVAFKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGKVESIQSykki 574
Cdd:PRK10762 247 PRLDKAPGEVRLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRS---- 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 575 igfvPQDDIVHG---------------NLTVEENL------WFSarcRLPADLPKPEKVLVVERVIESLGLQH-VRDSLV 632
Cdd:PRK10762 321 ----PQDGLANGivyisedrkrdglvlGMSVKENMsltalrYFS---RAGGSLKHADEQQAVSDFIRLFNIKTpSMEQAI 393
|
170 180 190
....*....|....*....|....*....|....*
gi 240256467 633 GTvekrgISGGQRKRVNVGLEMVMEPSLLILDEPT 667
Cdd:PRK10762 394 GL-----LSGGNQQKVAIARGLMTRPKVLILDEPT 423
|
|
| YjeQ_EngC |
cd01854 |
Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; ... |
526-550 |
3.46e-03 |
|
Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain.
Pssm-ID: 206747 [Multi-domain] Cd Length: 211 Bit Score: 40.07 E-value: 3.46e-03
10 20
....*....|....*....|....*
gi 240256467 526 GRVSAVMGPSGAGKTTFLTALTGKA 550
Cdd:cd01854 85 GKTSVLVGQSGVGKSTLLNALLPEL 109
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
498-667 |
4.33e-03 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 40.28 E-value: 4.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 498 EVAFKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGKVES---IQSYKKI 574
Cdd:cd03288 19 EIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGIDISklpLHTLRSR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 575 IGFVPQDDIVhgnltveenlwFSARCRLPADlpkPEKVLVVERVIESL---GLQHVRDSLVGTVEK------RGISGGQR 645
Cdd:cd03288 97 LSIILQDPIL-----------FSGSIRFNLD---PECKCTDDRLWEALeiaQLKNMVKSLPGGLDAvvteggENFSVGQR 162
|
170 180
....*....|....*....|..
gi 240256467 646 KRVNVGLEMVMEPSLLILDEPT 667
Cdd:cd03288 163 QLFCLARAFVRKSSILIMDEAT 184
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
525-666 |
4.82e-03 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 40.77 E-value: 4.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 525 PGRVSAVMGPSGAGKTTFLTALTGKAPGCIMTGMILVN---GKVESIQSYKKIIGFVPQDdiVHGNLTVEENL------- 594
Cdd:PRK10938 285 PGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGrrrGSGETIWDIKKHIGYVSSS--LHLDYRVSTSVrnvilsg 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 595 WF---------SARCRLPADlpkpekvlvveRVIESLGLqhvrDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDE 665
Cdd:PRK10938 363 FFdsigiyqavSDRQQKLAQ-----------QWLDILGI----DKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDE 427
|
.
gi 240256467 666 P 666
Cdd:PRK10938 428 P 428
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
519-667 |
4.85e-03 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 40.88 E-value: 4.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 519 VTGKLSPGRVSAVMGPSGAGKTTFLTALTG-KApgcIMTGMILV-NGKVESIQSYKKI---IGFVPQddivhG------- 586
Cdd:NF033858 20 VSLDIPAGCMVGLIGPDGVGKSSLLSLIAGaRK---IQQGRVEVlGGDMADARHRRAVcprIAYMPQ-----Glgknlyp 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 587 NLTVEENLWFSARCRlpaDLPKPEKvlvvERVIESL----GLQHVRDSLVGTvekrgISGGQRKRVnvGL--EMVMEPSL 660
Cdd:NF033858 92 TLSVFENLDFFGRLF---GQDAAER----RRRIDELlratGLAPFADRPAGK-----LSGGMKQKL--GLccALIHDPDL 157
|
....*..
gi 240256467 661 LILDEPT 667
Cdd:NF033858 158 LILDEPT 164
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
498-667 |
5.07e-03 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 39.70 E-value: 5.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 498 EVAFKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPgcIMTGMILVNGKVES---IQSYKKI 574
Cdd:cd03369 6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE--AEEGKIEIDGIDIStipLEDLRSS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 575 IGFVPQDDIVHGNlTVEENLwfsarcrLPADLPKPEKVLVVERVIESlGLQhvrdslvgtvekrgISGGQRKRVNVGLEM 654
Cdd:cd03369 84 LTIIPQDPTLFSG-TIRSNL-------DPFDEYSDEEIYGALRVSEG-GLN--------------LSQGQRQLLCLARAL 140
|
170
....*....|...
gi 240256467 655 VMEPSLLILDEPT 667
Cdd:cd03369 141 LKRPRVLVLDEAT 153
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
522-667 |
5.11e-03 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 40.87 E-value: 5.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 522 KLSPGRVSAVMGPSGAGKTTFLTALTGKAP---GCIMTGmilvngkvESIQsykkiIGFVPQDdivHGNLTVEENLWfsa 598
Cdd:PRK11819 346 SLPPGGIVGIIGPNGAGKSTLFKMITGQEQpdsGTIKIG--------ETVK-----LAYVDQS---RDALDPNKTVW--- 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 599 rcrlpadlpkpEKVlvvervieSLGLQHVRdslVGTVE-------------------KRGI-SGGQRKRVNVGLEMVMEP 658
Cdd:PRK11819 407 -----------EEI--------SGGLDIIK---VGNREipsrayvgrfnfkggdqqkKVGVlSGGERNRLHLAKTLKQGG 464
|
....*....
gi 240256467 659 SLLILDEPT 667
Cdd:PRK11819 465 NVLLLDEPT 473
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
531-665 |
5.91e-03 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 40.73 E-value: 5.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 531 VMGPSGAGKTTFLTALTG-KAPgciMTGMILVNGK---VESIQSYKKIIGFVPQDdiVHgnltveenlWFSarcRLPADL 606
Cdd:PRK10522 354 LIGGNGSGKSTLAMLLTGlYQP---QSGEILLDGKpvtAEQPEDYRKLFSAVFTD--FH---------LFD---QLLGPE 416
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 240256467 607 PKPEKVLVVERVIESLGLQHVRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDE 665
Cdd:PRK10522 417 GKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDE 475
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
525-667 |
7.05e-03 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 40.54 E-value: 7.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 525 PGRVSAVMGPSGAGKTTFLTaltgkapgcIMTGMILVN-GKVESIQSYKKII----GFVPQD---DIVHGNLTVeenlwf 596
Cdd:COG1245 98 KGKVTGILGPNGIGKSTALK---------ILSGELKPNlGDYDEEPSWDEVLkrfrGTELQDyfkKLANGEIKV------ 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 597 sARcrlpadlpKPE------KVL---------------VVERVIESLGLQHVRDSLVGTvekrgISGGQRKRVNVGLEMV 655
Cdd:COG1245 163 -AH--------KPQyvdlipKVFkgtvrellekvdergKLDELAEKLGLENILDRDISE-----LSGGELQRVAIAAALL 228
|
170
....*....|..
gi 240256467 656 MEPSLLILDEPT 667
Cdd:COG1245 229 RDADFYFFDEPS 240
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
519-666 |
7.64e-03 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 39.69 E-value: 7.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 519 VTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAP---GCIM-TGMILVNGKVESIQSYKKIIGFVPQDDIVHGN--LTVEE 592
Cdd:PRK15079 40 VTLRLYEGETLGVVGESGCGKSTFARAIIGLVKatdGEVAwLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNprMTIGE 119
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 240256467 593 NLWFSARCRLPaDLPKPEkvlVVERVIESLglqhVRDSLVGTVEKR---GISGGQRKRVNVGLEMVMEPSLLILDEP 666
Cdd:PRK15079 120 IIAEPLRTYHP-KLSRQE---VKDRVKAMM----LKVGLLPNLINRyphEFSGGQCQRIGIARALILEPKLIICDEP 188
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
509-667 |
7.81e-03 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 39.69 E-value: 7.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 509 KGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTF---LTALTgkAPGcimTGMILVNG----KVESIQSYKKIIGFV--- 578
Cdd:PRK13633 19 ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIakhMNALL--IPS---EGKVYVDGldtsDEENLWDIRNKAGMVfqn 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 579 PQDDIVHGnlTVEENLWFSarcrlPADLP-KPEKVLvvERVIESLglqhvrdSLVGTVEKRG-----ISGGQRKRVNVGL 652
Cdd:PRK13633 94 PDNQIVAT--IVEEDVAFG-----PENLGiPPEEIR--ERVDESL-------KKVGMYEYRRhaphlLSGGQKQRVAIAG 157
|
170
....*....|....*
gi 240256467 653 EMVMEPSLLILDEPT 667
Cdd:PRK13633 158 ILAMRPECIIFDEPT 172
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
523-667 |
7.98e-03 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 39.95 E-value: 7.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 523 LSPGRVSAVMGPSGAGKTTFLTALTgkapgCIMT---GMILVNGK------VESIQSYKKIIGFVPQDDivHGNL----- 588
Cdd:PRK11308 38 LERGKTLAVVGESGCGKSTLARLLT-----MIETptgGELYYQGQdllkadPEAQKLLRQKIQIVFQNP--YGSLnprkk 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256467 589 ---TVEENLwfsarcRLPADLPKPEKVLVVERVIESLGLQ--------HVrdslvgtvekrgISGGQRKRVNVGLEMVME 657
Cdd:PRK11308 111 vgqILEEPL------LINTSLSAAERREKALAMMAKVGLRpehydrypHM------------FSGGQRQRIAIARALMLD 172
|
170
....*....|
gi 240256467 658 PSLLILDEPT 667
Cdd:PRK11308 173 PDVVVADEPV 182
|
|
| |
