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Conserved domains on  [gi|30695429|ref|NP_199644|]
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Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

Protein Classification

RCC1 domain-containing protein( domain architecture ID 11474102)

RCC1 (regulator of chromosome condensation) domain-containing protein similar to Arabidopsis UVR8 (UV RESISTANCE LOCUS 8), which plays an important role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway.

Gene Ontology:  GO:0003682|GO:0005085
PubMed:  9510255|18442486

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 45-429 1.41e-64

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


:

Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 211.37  E-value: 1.41e-64
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30695429  45 TVMSFGDGNLGALGLSSSSipgmgmDAYEPTVVSNLpSDISSISAGHYHSLAVTSSGEIWAWGRNDEGQLGriviDSSRD 124
Cdd:COG5184  18 TVWCWGDNSYGQLGDGTTT------DRSTPVRVPGL-SNVVAVAAGGDHTCALKADGTVWCWGNNSYGQLG----DGTTT 86

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30695429 125 SRSEPKRVEGLENVnVQAAfASGVVSAAIGDDGSLWVWGRSKRGQLGLGNGiIEARVPSRVENlAAEHVVKVSLGWGHAL 204
Cdd:COG5184  87 DRTTPVKVPGLTGV-VAVA-AGYYHSCALKSDGTVWCWGDNSSGQLGDGTT-TNRLTPVQVDA-GLSGVVAIAAGGYHTC 162

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30695429 205 ALTVDGKVFGWGYVADGRVGnvglpleaslldsitDGSMKGHHAAGDlnleaaekkvVEAMSkendmpiawepclveetc 284
Cdd:COG5184 163 ALKSDGTVWCWGANSYGQLG---------------DGTTTDRPTPVQ----------VGGLS------------------ 199

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30695429 285 neKVADIACGSDHSLILCHDGTLLSAGSNIYGQLGRSKQDLGMKPVDIT--ESPISIAAGLGHSLAICNRGerNILSWGW 362
Cdd:COG5184 200 --GVVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRATPVQVAglTGVVAIAAGGSHTCALKSDG--TVWCWGD 275

                       330       340       350       360       370       380
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30695429 363 NRSRQLGRG--KPENLPREVEGFDGesPASVSAGRVHSLCVTEKGEAWVWGCGKNGRLGLGSSSDEPEP 429
Cdd:COG5184 276 NSYGQLGDGttTDRSTPVKVPGLSG--VVAVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTDRSTP 342
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 45-429 1.41e-64

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 211.37  E-value: 1.41e-64
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30695429  45 TVMSFGDGNLGALGLSSSSipgmgmDAYEPTVVSNLpSDISSISAGHYHSLAVTSSGEIWAWGRNDEGQLGriviDSSRD 124
Cdd:COG5184  18 TVWCWGDNSYGQLGDGTTT------DRSTPVRVPGL-SNVVAVAAGGDHTCALKADGTVWCWGNNSYGQLG----DGTTT 86

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30695429 125 SRSEPKRVEGLENVnVQAAfASGVVSAAIGDDGSLWVWGRSKRGQLGLGNGiIEARVPSRVENlAAEHVVKVSLGWGHAL 204
Cdd:COG5184  87 DRTTPVKVPGLTGV-VAVA-AGYYHSCALKSDGTVWCWGDNSSGQLGDGTT-TNRLTPVQVDA-GLSGVVAIAAGGYHTC 162

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30695429 205 ALTVDGKVFGWGYVADGRVGnvglpleaslldsitDGSMKGHHAAGDlnleaaekkvVEAMSkendmpiawepclveetc 284
Cdd:COG5184 163 ALKSDGTVWCWGANSYGQLG---------------DGTTTDRPTPVQ----------VGGLS------------------ 199

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30695429 285 neKVADIACGSDHSLILCHDGTLLSAGSNIYGQLGRSKQDLGMKPVDIT--ESPISIAAGLGHSLAICNRGerNILSWGW 362
Cdd:COG5184 200 --GVVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRATPVQVAglTGVVAIAAGGSHTCALKSDG--TVWCWGD 275

                       330       340       350       360       370       380
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30695429 363 NRSRQLGRG--KPENLPREVEGFDGesPASVSAGRVHSLCVTEKGEAWVWGCGKNGRLGLGSSSDEPEP 429
Cdd:COG5184 276 NSYGQLGDGttTDRSTPVKVPGLSG--VVAVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTDRSTP 342
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
156-206 5.87e-11

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 57.53  E-value: 5.87e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 30695429   156 DGSLWVWGRSKRGQLGLGNgIIEARVPSRVENLAAEHVVKVSLGWGHALAL 206
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGT-TENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 45-429 1.41e-64

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 211.37  E-value: 1.41e-64
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30695429  45 TVMSFGDGNLGALGLSSSSipgmgmDAYEPTVVSNLpSDISSISAGHYHSLAVTSSGEIWAWGRNDEGQLGriviDSSRD 124
Cdd:COG5184  18 TVWCWGDNSYGQLGDGTTT------DRSTPVRVPGL-SNVVAVAAGGDHTCALKADGTVWCWGNNSYGQLG----DGTTT 86

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30695429 125 SRSEPKRVEGLENVnVQAAfASGVVSAAIGDDGSLWVWGRSKRGQLGLGNGiIEARVPSRVENlAAEHVVKVSLGWGHAL 204
Cdd:COG5184  87 DRTTPVKVPGLTGV-VAVA-AGYYHSCALKSDGTVWCWGDNSSGQLGDGTT-TNRLTPVQVDA-GLSGVVAIAAGGYHTC 162

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30695429 205 ALTVDGKVFGWGYVADGRVGnvglpleaslldsitDGSMKGHHAAGDlnleaaekkvVEAMSkendmpiawepclveetc 284
Cdd:COG5184 163 ALKSDGTVWCWGANSYGQLG---------------DGTTTDRPTPVQ----------VGGLS------------------ 199

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30695429 285 neKVADIACGSDHSLILCHDGTLLSAGSNIYGQLGRSKQDLGMKPVDIT--ESPISIAAGLGHSLAICNRGerNILSWGW 362
Cdd:COG5184 200 --GVVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRATPVQVAglTGVVAIAAGGSHTCALKSDG--TVWCWGD 275

                       330       340       350       360       370       380
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30695429 363 NRSRQLGRG--KPENLPREVEGFDGesPASVSAGRVHSLCVTEKGEAWVWGCGKNGRLGLGSSSDEPEP 429
Cdd:COG5184 276 NSYGQLGDGttTDRSTPVKVPGLSG--VVAVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTDRSTP 342
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 85-454 3.42e-62

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 205.21  E-value: 3.42e-62
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30695429  85 SSISAGHYHSLAVTSSGEIWAWGRNDEGQLGriviDSSRDSRSEPKRVEGLENVnVQAAfASGVVSAAIGDDGSLWVWGR 164
Cdd:COG5184   1 TQVAAGGSHSCALKSDGTVWCWGDNSYGQLG----DGTTTDRSTPVRVPGLSNV-VAVA-AGGDHTCALKADGTVWCWGN 74

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30695429 165 SKRGQLGLGNgIIEARVPSRVENLAaeHVVKVSLGWGHALALTVDGKVFGWGYVADGRVGNvglpleaslldsitdgsmk 244
Cdd:COG5184  75 NSYGQLGDGT-TTDRTTPVKVPGLT--GVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGD------------------- 132

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30695429 245 ghhaaGDLNLEAAEKKVVEAMSkendmpiawepclveetcneKVADIACGSDHSLILCHDGTLLSAGSNIYGQLGRSKQD 324
Cdd:COG5184 133 -----GTTTNRLTPVQVDAGLS--------------------GVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTT 187

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30695429 325 LGMKPVDITESP--ISIAAGLGHSLAICNRGErnILSWGWNRSRQLGRGKPEN--LPREVEGfdGESPASVSAGRVHSLC 400
Cdd:COG5184 188 DRPTPVQVGGLSgvVAVAAGGDHSCALKSDGT--VWCWGSNSSGQLGDGTTTDraTPVQVAG--LTGVVAIAAGGSHTCA 263

                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|....
gi 30695429 401 VTEKGEAWVWGCGKNGRLGLGSSSDEPEPMLLEDVEGcVLQAVAGFDHSLILVA 454
Cdd:COG5184 264 LKSDGTVWCWGDNSYGQLGDGTTTDRSTPVKVPGLSG-VVAVAAGSSHTCALLT 316
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 45-330 3.09e-41

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 149.74  E-value: 3.09e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30695429  45 TVMSFGDGNLGALGlssssiPGMGMDAYEPTVVSNLPSDISSISAGHYHSLAVTSSGEIWAWGRNDEGQLGriviDSSRD 124
Cdd:COG5184 118 TVWCWGDNSSGQLG------DGTTTNRLTPVQVDAGLSGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLG----DGTTT 187

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30695429 125 SRSEPKRVEGLENVnvqAAFASGVVSA-AIGDDGSLWVWGRSKRGQLGLGNGIIEArVPSRVENLaaEHVVKVSLGWGHA 203
Cdd:COG5184 188 DRPTPVQVGGLSGV---VAVAAGGDHScALKSDGTVWCWGSNSSGQLGDGTTTDRA-TPVQVAGL--TGVVAIAAGGSHT 261

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30695429 204 LALTVDGKVFGWGYVADGRVGNvglpleaslldsitdgsmkghhaaGDLNLEAAEKKVVEAmskendmpiawepclveet 283
Cdd:COG5184 262 CALKSDGTVWCWGDNSYGQLGD------------------------GTTTDRSTPVKVPGL------------------- 298

                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*..
gi 30695429 284 cnEKVADIACGSDHSLILCHDGTLLSAGSNIYGQLGRSKQDLGMKPV 330
Cdd:COG5184 299 --SGVVAVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTDRSTPV 343
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
156-206 5.87e-11

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 57.53  E-value: 5.87e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 30695429   156 DGSLWVWGRSKRGQLGLGNgIIEARVPSRVENLAAEHVVKVSLGWGHALAL 206
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGT-TENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
84-113 1.58e-08

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 50.12  E-value: 1.58e-08
                          10        20        30
                  ....*....|....*....|....*....|
gi 30695429    84 ISSISAGHYHSLAVTSSGEIWAWGRNDEGQ 113
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
404-452 5.50e-08

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 49.05  E-value: 5.50e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 30695429   404 KGEAWVWGCGKNGRLGLGSSSDEPEPMLLEDVEGC-VLQAVAGFDHSLIL 452
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNkVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
100-147 2.25e-07

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 47.13  E-value: 2.25e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 30695429   100 SGEIWAWGRNDEGQLGRIvidsSRDSRSEPKRVEGLENVNVQAAFASG 147
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLG----TTENVLVPQKVEGLSGNKVVQVACGG 44
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
357-401 2.41e-07

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 47.13  E-value: 2.41e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 30695429   357 ILSWGWNRSRQLGRGKPEN--LPREVEGFDGESPASVSAGRVHSLCV 401
Cdd:pfam00415   4 VYTWGRNDYGQLGLGTTENvlVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
288-317 5.08e-06

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 42.80  E-value: 5.08e-06
                          10        20        30
                  ....*....|....*....|....*....|
gi 30695429   288 VADIACGSDHSLILCHDGTLLSAGSNIYGQ 317
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
193-216 2.83e-05

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 40.87  E-value: 2.83e-05
                          10        20
                  ....*....|....*....|....
gi 30695429   193 VVKVSLGWGHALALTVDGKVFGWG 216
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWG 24
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
304-349 1.01e-04

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 39.81  E-value: 1.01e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 30695429   304 DGTLLSAGSNIYGQLGRSKQDLGMKPVDITESP----ISIAAGLGHSLAI 349
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSgnkvVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
48-97 1.66e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 36.34  E-value: 1.66e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 30695429    48 SFGDGNLGALGLSSSSipgmgmDAYEPTVVSNLPS-DISSISAGHYHSLAV 97
Cdd:pfam00415   6 TWGRNDYGQLGLGTTE------NVLVPQKVEGLSGnKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
389-417 2.39e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 35.48  E-value: 2.39e-03
                          10        20
                  ....*....|....*....|....*....
gi 30695429   389 ASVSAGRVHSLCVTEKGEAWVWGCGKNGR 417
Cdd:pfam13540   2 VSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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