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Conserved domains on  [gi|15238238|ref|NP_199010|]
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Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
216-373 1.86e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 81.98  E-value: 1.86e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 216 IERNPDDHDALYNWALILQESADnvspdsvspskddlLEEACKKYDEATRLCPTLYDAYYNwaiaisdrakiRGRTKEAE 295
Cdd:COG0457   1 LELDPDDAEAYNNLGLAYRRLGR--------------YEEAIEDYEKALELDPDDAEALYN-----------LGLAYLRL 55

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15238238 296 ELWEQAADNYEKAVQLNWNSSQALNNWGLVLQELSQIvparekekvvRTAISKFRAAIRLQFDFHRAIYNLGTVLYGL 373
Cdd:COG0457  56 GRYEEALADYEQALELDPDDAEALNNLGLALQALGRY----------EEALEDYDKALELDPDDAEALYNLGLALLEL 123
PRK10819 super family cl35954
transport protein TonB; Provisional
 6-104 8.72e-04

transport protein TonB; Provisional


The actual alignment was detected with superfamily member PRK10819:

Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 41.21  E-value: 8.72e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238    6 EEPQlqngAAPAESETEQNPIPEPQLQTEPKLTGEIPEIEADLTPEEVQSEvtDAKPEEVQSEVKPEEVKTVV-TDAKPE 84
Cdd:PRK10819  59 EPPQ----AVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKP--KPKPVKKVEEQPKREVKPVEpRPASPF 132

                         90       100
                 ....*....|....*....|
gi 15238238   85 EAQSEVKPEEVQSVVTDTKP 104
Cdd:PRK10819 133 ENTAPARPTSSTATAAASKP 152
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
216-373 1.86e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 81.98  E-value: 1.86e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 216 IERNPDDHDALYNWALILQESADnvspdsvspskddlLEEACKKYDEATRLCPTLYDAYYNwaiaisdrakiRGRTKEAE 295
Cdd:COG0457   1 LELDPDDAEAYNNLGLAYRRLGR--------------YEEAIEDYEKALELDPDDAEALYN-----------LGLAYLRL 55

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15238238 296 ELWEQAADNYEKAVQLNWNSSQALNNWGLVLQELSQIvparekekvvRTAISKFRAAIRLQFDFHRAIYNLGTVLYGL 373
Cdd:COG0457  56 GRYEEALADYEQALELDPDDAEALNNLGLALQALGRY----------EEALEDYDKALELDPDDAEALYNLGLALLEL 123
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 213-322 1.21e-05

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 45.82  E-value: 1.21e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238  213 ASAIERNPDDH-DALYNWALILQESADNvspdsvspskddllEEACKKYDEATRLCPTLYDAYYNWAIAI---SDRAKIR 288
Cdd:PRK02603  61 ALKLEEDPNDRsYILYNMGIIYASNGEH--------------DKALEYYHQALELNPKQPSALNNIAVIYhkrGEKAEEA 126

                         90       100       110
                 ....*....|....*....|....*....|....
gi 15238238  289 GRTKEAEELWEQAADNYEKAVQLNWNSSQALNNW 322
Cdd:PRK02603 127 GDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNW 160
TOM20_plant pfam06552
Plant specific mitochondrial import receptor subunit TOM20; This family consists of several ...
 297-367 8.34e-05

Plant specific mitochondrial import receptor subunit TOM20; This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesized in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria.


Pssm-ID: 284068 [Multi-domain]  Cd Length: 187  Bit Score: 43.74  E-value: 8.34e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15238238   297 LWEQAADNYEKAVQLNWNSSQALNNWGLVLQELSQIVPAREKEKVVRTAISKFRAAIRLQFDFHRAIYNLG 367
Cdd:pfam06552   6 FFEHARKDAEATYKNNPLDADNLTRWGGALLELSQFQPIPEAKQMIQDAISKLEEALTIDPKKHDALWCIG 76
PRK10819 PRK10819
transport protein TonB; Provisional
 6-104 8.72e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 41.21  E-value: 8.72e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238    6 EEPQlqngAAPAESETEQNPIPEPQLQTEPKLTGEIPEIEADLTPEEVQSEvtDAKPEEVQSEVKPEEVKTVV-TDAKPE 84
Cdd:PRK10819  59 EPPQ----AVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKP--KPKPVKKVEEQPKREVKPVEpRPASPF 132

                         90       100
                 ....*....|....*....|
gi 15238238   85 EAQSEVKPEEVQSVVTDTKP 104
Cdd:PRK10819 133 ENTAPARPTSSTATAAASKP 152
DUF4045 pfam13254
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...
 8-92 6.07e-03

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.


Pssm-ID: 433066 [Multi-domain]  Cd Length: 415  Bit Score: 39.38  E-value: 6.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238     8 PQLQNGAAPAESETEQNPIPEPQLQTEPKLTGEIPEIEADLTPEEVQSEVTDAKPEEVQSEVKPEEVKTVVTDAKPEEAQ 87
Cdd:pfam13254 235 EEPSEEADTLSTDKEQSPAPTSASEPPPKTKELPKDSEEPAAPSKSAEASTEKKEPDTESSPETSSEKSAPSLLSPVSKA 314


                  ....*
gi 15238238    88 SEVKP 92
Cdd:pfam13254 315 SIDKP 319
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 5-159 6.84e-03

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 39.59  E-value: 6.84e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238      5 VEEPQLQNGAAPAESETEQNPIPEPQLQTEPKLTGEIP-EIEADLTPE-EVQSEVTDAKPEEVQSEVKPEEVKTVVTDAK 82
Cdd:TIGR00927  649 GERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPaERKGEQEGEgEIEAKEADHKGETEAEEVEHEGETEAEGTED 728

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15238238     83 PEEAQSEVKPEEVQsvvtdtKPDLTDVDLSPGGSEEIPIRSTEVEQESTTSVLKKDDDGNktfTMRELLSELKSEEG 159
Cdd:TIGR00927  729 EGEIETGEEGEEVE------DEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGE---IQAGEDGEMKGDEG 796
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
216-373 1.86e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 81.98  E-value: 1.86e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 216 IERNPDDHDALYNWALILQESADnvspdsvspskddlLEEACKKYDEATRLCPTLYDAYYNwaiaisdrakiRGRTKEAE 295
Cdd:COG0457   1 LELDPDDAEAYNNLGLAYRRLGR--------------YEEAIEDYEKALELDPDDAEALYN-----------LGLAYLRL 55

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15238238 296 ELWEQAADNYEKAVQLNWNSSQALNNWGLVLQELSQIvparekekvvRTAISKFRAAIRLQFDFHRAIYNLGTVLYGL 373
Cdd:COG0457  56 GRYEEALADYEQALELDPDDAEALNNLGLALQALGRY----------EEALEDYDKALELDPDDAEALYNLGLALLEL 123
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
187-375 2.54e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 81.59  E-value: 2.54e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 187 LINRIQVNDEEGRSRQrvlafAARKYASAIERNPDDHDALYNWALILQESADnvspdsvspskddlLEEACKKYDEATRL 266
Cdd:COG0457  11 YNNLGLAYRRLGRYEE-----AIEDYEKALELDPDDAEALYNLGLAYLRLGR--------------YEEALADYEQALEL 71

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 267 CPTLYDAYYNWAIAISDrakiRGRTKEAEELweqaadnYEKAVQLNWNSSQALNNWGLVLQELSQivparekekvVRTAI 346
Cdd:COG0457  72 DPDDAEALNNLGLALQA----LGRYEEALED-------YDKALELDPDDAEALYNLGLALLELGR----------YDEAI 130

                       170       180
                ....*....|....*....|....*....
gi 15238238 347 SKFRAAIRLQFDFHRAIYNLGTVLYGLAE 375
Cdd:COG0457 131 EAYERALELDPDDADALYNLGIALEKLGR 159
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 201-458 3.51e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 75.41  E-value: 3.51e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 201 RQRVLAFAARKYASAIERNPDDHDALYNWALILQESADnvspdsvspskddlLEEACKKYDEATRLCPTLYDAYYNwaia 280
Cdd:COG3914  90 ALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGR--------------LEEALAALRRALALNPDFAEAYLN---- 151

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 281 isdrakiRGRTKEAEELWEQAADNYEKAVQLNWNSSQALNNWGLVLQELSQIvparekekvvRTAISKFRAAIRLQFDFH 360
Cdd:COG3914 152 -------LGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRL----------EEAIAAYRRALELDPDNA 214

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 361 RAIYNL--------GTVLYGLAEDTLRTGGSGNGKDMPPGELY--SQSAIYIAAAH---------SLKPSYSVYSSAlrl 421
Cdd:COG3914 215 DAHSNLlfalrqacDWEVYDRFEELLAALARGPSELSPFALLYlpDDDPAELLALArawaqlvaaAAAPELPPPPNP--- 291

                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*.
gi 15238238 422 vrsmlPLPH--LKVGYLTA----PPVGNSLAP---HSDwkRTEFEL 458
Cdd:COG3914 292 -----RDPDrkLRIGYVSAdfrrHAVGYLLEPlleHHD--RSRFEI 330
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 174-379 7.40e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 68.10  E-value: 7.40e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 174 SASQPAENNPAMDLINRIQVNDEEGRSRQRVLAFAARKYASAIERNPDDHDALYNWALILQESADNVSPDSVSPSKDDLL 253
Cdd:COG3914  15 AALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRY 94

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 254 EEACKKYDEATRLCPTLYDAYYNWAIAisdrAKIRGRtkeaeelWEQAADNYEKAVQLNWNSSQALNNWGLVLQELSQIv 333
Cdd:COG3914  95 EEALALYRRALALNPDNAEALFNLGNL----LLALGR-------LEEALAALRRALALNPDFAEAYLNLGEALRRLGRL- 162

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|.
gi 15238238 334 pareKEkvvrtAISKFRAAIRLQFDFHRAIYNLGTVLYGL-----AEDTLR 379
Cdd:COG3914 163 ----EE-----AIAALRRALELDPDNAEALNNLGNALQDLgrleeAIAAYR 204
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
208-376 2.11e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 55.40  E-value: 2.11e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 208 AARKYASAIERNPDDHDALYNWALILQESADnvspdsvspskddlLEEACKKYDEATRLCPTLYDAYYNWAIAISDraki 287
Cdd:COG0457  95 ALEDYDKALELDPDDAEALYNLGLALLELGR--------------YDEAIEAYERALELDPDDADALYNLGIALEK---- 156

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 288 RGRTKEAEELWEQAADNYEKAVQLNWNSSQALNNWGLVLQELSQIVPAREKEKVVRTAISKFRAAIRLQFDFHRAIYNLG 367
Cdd:COG0457 157 LGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLA 236


                ....*....
gi 15238238 368 TVLYGLAED 376
Cdd:COG0457 237 ALALYQYRA 245
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 201-379 8.55e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 55.00  E-value: 8.55e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 201 RQRVLAFAARKYASAIERNPDDHDALYNWALILQESADNVSPDSVSPSKDDLLEEACkkyDEATRLCPTLYDAYYNWAIA 280
Cdd:COG3914  14 AAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAA---AAALLLLAALLELAALLLQA 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 281 ISDrakirgrtkeaeelWEQAADNYEKAVQLNWNSSQALNNWGLVLQELSQIvparekekvvRTAISKFRAAIRLQFDFH 360
Cdd:COG3914  91 LGR--------------YEEALALYRRALALNPDNAEALFNLGNLLLALGRL----------EEALAALRRALALNPDFA 146

                       170       180
                ....*....|....*....|....
gi 15238238 361 RAIYNLGTVL-----YGLAEDTLR 379
Cdd:COG3914 147 EAYLNLGEALrrlgrLEEAIAALR 170
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 208-337 3.59e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.42  E-value: 3.59e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 208 AARKYASAIERNPDDHDALYNWALILQESADnvspdsvspskddlLEEACKKYDEATRLCPTLYDAYYNWAIAisdrAKI 287
Cdd:COG4783  23 AEALLEKALELDPDNPEAFALLGEILLQLGD--------------LDEAIVLLHEALELDPDEPEARLNLGLA----LLK 84

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|
gi 15238238 288 RGRTKEAEELweqaadnYEKAVQLNWNSSQALNNWGLVLQELSQIVPARE 337
Cdd:COG4783  85 AGDYDEALAL-------LEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 205-304 5.36e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 49.57  E-value: 5.36e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 205 LAFAARKYASAIERNPDDHDALYNWALILQESADnvspdsvspskddlLEEACKKYDEATRLCPTLYDAYYNWAIAIsdr 284
Cdd:COG5010  70 FEESLALLEQALQLDPNNPELYYNLALLYSRSGD--------------KDEAKEYYEKALALSPDNPNAYSNLAALL--- 132

                        90       100
                ....*....|....*....|
gi 15238238 285 aKIRGRTKEAEELWEQAADN 304
Cdd:COG5010 133 -LSLGQDDEAKAALQRALGT 151
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 208-303 6.18e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.85  E-value: 6.18e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 208 AARKYASAIERNPDDHDALYNWALILQESADNvspdsvspskddllEEACKKYDEATRLCPTLYDAYYNWAIAisdrAKI 287
Cdd:COG4235  36 ALAAYEKALRLDPDNADALLDLAEALLAAGDT--------------EEAEELLERALALDPDNPEALYLLGLA----AFQ 97

                        90
                ....*....|....*.
gi 15238238 288 RGRTKEAEELWEQAAD 303
Cdd:COG4235  98 QGDYAEAIAAWQKLLA 113
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
167-356 8.53e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 50.30  E-value: 8.53e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 167 ASPFSRESASQPAENNPAMDLINRIQVNDEEGRSRQRVLAFA--ARKYASAIERNPDDHDALYNWALILQESADnvspds 244
Cdd:COG4785  15 AAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAalAAERIDRALALPDLAQLYYERGVAYDSLGD------ 88

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 245 vspskddlLEEACKKYDEATRLCPTLYDAYYNwaiaisdrakiRGRTKEAEELWEQAADNYEKAVQLNWNSSQALNNWGL 324
Cdd:COG4785  89 --------YDLAIADFDQALELDPDLAEAYNN-----------RGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGI 149

                       170       180       190
                ....*....|....*....|....*....|..
gi 15238238 325 VLQELsqivpAREKEkvvrtAISKFRAAIRLQ 356
Cdd:COG4785 150 ALYYL-----GRYEL-----AIADLEKALELD 171
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
208-310 2.13e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.32  E-value: 2.13e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 208 AARKYASAIERNPDDHDALYNWALILQESADnvspdsvspskddlLEEAcKKYDEATRLCPTLYDAYYNWAIAisdrAKI 287
Cdd:COG3063  11 AEEYYEKALELDPDNADALNNLGLLLLEQGR--------------YDEA-IALEKALKLDPNNAEALLNLAEL----LLE 71

                        90       100
                ....*....|....*....|...
gi 15238238 288 RGRTKEAEELWEQAADNYEKAVQ 310
Cdd:COG3063  72 LGDYDEALAYLERALELDPSALR 94
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
270-375 2.69e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 48.76  E-value: 2.69e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 270 LYDAYYNWAIAISDRAKI---RGRTKEAEELWEQAADNYEKAVQLNWNSSQALNNWGLVLQELSQivparekekvVRTAI 346
Cdd:COG4785  58 LAAERIDRALALPDLAQLyyeRGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGD----------YDAAL 127

                        90       100
                ....*....|....*....|....*....
gi 15238238 347 SKFRAAIRLQFDFHRAIYNLGTVLYGLAE 375
Cdd:COG4785 128 EDFDRALELDPDYAYAYLNRGIALYYLGR 156
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
298-371 2.86e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.93  E-value: 2.86e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15238238 298 WEQAADNYEKAVQLNWNSSQALNNWGLVLQELSQIVPAREkekvvrtaiskFRAAIRLQFDFHRAIYNLGTVLY 371
Cdd:COG3063   8 LEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-----------LEKALKLDPNNAEALLNLAELLL 70
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 199-337 4.09e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.88  E-value: 4.09e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 199 RSRQRVLAFAARKYASAIERNPDDHDALYNWALILQESADNVSPDSVSPSKDDLLEEACKKYDEATRLCPTLYDAYYNWA 278
Cdd:COG5010  16 LLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLA 95

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 15238238 279 IAisdrAKIRGRTKEAEELweqaadnYEKAVQLNWNSSQALNNWGLVLQELSQIVPARE 337
Cdd:COG5010  96 LL----YSRSGDKDEAKEY-------YEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 298-379 6.65e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.49  E-value: 6.65e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 298 WEQAADNYEKAVQLNWNSSQALNNWGLVLQELSQIvparekekvvRTAISKFRAAIRLQFDFHRAIYNLGTVLYGL---- 373
Cdd:COG5010  70 FEESLALLEQALQLDPNNPELYYNLALLYSRSGDK----------DEAKEYYEKALALSPDNPNAYSNLAALLLSLgqdd 139


                ....*..
gi 15238238 374 -AEDTLR 379
Cdd:COG5010 140 eAKAALQ 146
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 208-379 6.79e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.80  E-value: 6.79e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 208 AARKYASAIERNPDDHDALYNWALILQesadnvspdsvspsKDDLLEEACKKYDEATRLCPTLYDAYYNWAiaisdraki 287
Cdd:COG2956  61 AIRIHQKLLERDPDRAEALLELAQDYL--------------KAGLLDRAEELLEKLLELDPDDAEALRLLA--------- 117

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 288 rgRTKEAEELWEQAADNYEKAVQLNWNSSQALNNWGLVLQELSQIvparekekvvRTAISKFRAAIRLQFDFHRAIYNLG 367
Cdd:COG2956 118 --EIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDY----------DEAIEALEKALKLDPDCARALLLLA 185

                       170
                ....*....|....*..
gi 15238238 368 TVL-----YGLAEDTLR 379
Cdd:COG2956 186 ELYleqgdYEEAIAALE 202
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 213-322 1.21e-05

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 45.82  E-value: 1.21e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238  213 ASAIERNPDDH-DALYNWALILQESADNvspdsvspskddllEEACKKYDEATRLCPTLYDAYYNWAIAI---SDRAKIR 288
Cdd:PRK02603  61 ALKLEEDPNDRsYILYNMGIIYASNGEH--------------DKALEYYHQALELNPKQPSALNNIAVIYhkrGEKAEEA 126

                         90       100       110
                 ....*....|....*....|....*....|....
gi 15238238  289 GRTKEAEELWEQAADNYEKAVQLNWNSSQALNNW 322
Cdd:PRK02603 127 GDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNW 160
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 258-375 1.31e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.18  E-value: 1.31e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 258 KKYDEATRLCPTLYDAYYNWAIAISDRAKIRGRTKEaeelWEQAADNYEKAVQLNWNSSQALNNWGLVLQELSQIvpare 337
Cdd:COG4783  18 GDYDEAEALLEKALELDPDNPEAFALLGEILLQLGD----LDEAIVLLHEALELDPDEPEARLNLGLALLKAGDY----- 88

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 15238238 338 kekvvRTAISKFRAAIRLQFDFHRAIYNLGTVLYGLAE 375
Cdd:COG4783  89 -----DEALALLEKALKLDPEHPEAYLRLARAYRALGR 121
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
170-354 1.59e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 46.45  E-value: 1.59e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 170 FSRESASQPAENNP--AMDLINRIQVNDEEGRsrqrvLAFAARKYASAIERNPDDHDALYNWALILQESADnvspdsvsp 247
Cdd:COG4785  57 ALAAERIDRALALPdlAQLYYERGVAYDSLGD-----YDLAIADFDQALELDPDLAEAYNNRGLAYLLLGD--------- 122

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 248 skddlLEEACKKYDEATRLCPTLYDAYYNwaiaisdrakiRGRTKEAEELWEQAADNYEKAVQLNWNSSQALNNWGLVLQ 327
Cdd:COG4785 123 -----YDAALEDFDRALELDPDYAYAYLN-----------RGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAER 186

                       170       180       190
                ....*....|....*....|....*....|....*..
gi 15238238 328 EL----------SQIVPAREKEKVVRTAISKFRAAIR 354
Cdd:COG4785 187 KLdpekalalllEDWATAYLLQGDTEEARELFKLALA 223
TOM20_plant pfam06552
Plant specific mitochondrial import receptor subunit TOM20; This family consists of several ...
 297-367 8.34e-05

Plant specific mitochondrial import receptor subunit TOM20; This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesized in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria.


Pssm-ID: 284068 [Multi-domain]  Cd Length: 187  Bit Score: 43.74  E-value: 8.34e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15238238   297 LWEQAADNYEKAVQLNWNSSQALNNWGLVLQELSQIVPAREKEKVVRTAISKFRAAIRLQFDFHRAIYNLG 367
Cdd:pfam06552   6 FFEHARKDAEATYKNNPLDADNLTRWGGALLELSQFQPIPEAKQMIQDAISKLEEALTIDPKKHDALWCIG 76
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 289-371 1.19e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 42.30  E-value: 1.19e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 289 GRTKEAEELWEQAADNYEKAVQLNWNSSQALNNWGLVLQELSQIVPAREkekvvrtaisKFRAAIRLQFDFHRAIYNLGT 368
Cdd:COG4235  24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEE----------LLERALALDPDNPEALYLLGL 93


                ...
gi 15238238 369 VLY 371
Cdd:COG4235  94 AAF 96
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
253-337 3.91e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.77  E-value: 3.91e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 253 LEEACKKYDEATRLCPTLYDAYYNWAIAISDRakirGRTKEAEElweqaadnYEKAVQLNWNSSQALNNWGLVLQELSQI 332
Cdd:COG3063   8 LEEAEEYYEKALELDPDNADALNNLGLLLLEQ----GRYDEAIA--------LEKALKLDPNNAEALLNLAELLLELGDY 75


                ....*
gi 15238238 333 VPARE 337
Cdd:COG3063  76 DEALA 80
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 208-305 6.32e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.18  E-value: 6.32e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 208 AARKYASAIERNPDDHDALYNWALILQESADnvspdsvspskddlLEEACKKYDEATRLCPTLYDAYYNWAIAISDraki 287
Cdd:COG4783  57 AIVLLHEALELDPDEPEARLNLGLALLKAGD--------------YDEALALLEKALKLDPEHPEAYLRLARAYRA---- 118

                        90
                ....*....|....*...
gi 15238238 288 RGRTKEAEELWEQAADNY 305
Cdd:COG4783 119 LGRPDEAIAALEKALELD 136
PRK10819 PRK10819
transport protein TonB; Provisional
 6-104 8.72e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 41.21  E-value: 8.72e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238    6 EEPQlqngAAPAESETEQNPIPEPQLQTEPKLTGEIPEIEADLTPEEVQSEvtDAKPEEVQSEVKPEEVKTVV-TDAKPE 84
Cdd:PRK10819  59 EPPQ----AVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKP--KPKPVKKVEEQPKREVKPVEpRPASPF 132

                         90       100
                 ....*....|....*....|
gi 15238238   85 EAQSEVKPEEVQSVVTDTKP 104
Cdd:PRK10819 133 ENTAPARPTSSTATAAASKP 152
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 208-337 1.20e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.87  E-value: 1.20e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 208 AARKYASAIERNPDDHDALYNWALILQESAD------------NVSPDSVSP--------SKDDLLEEACKKYDEATRLC 267
Cdd:COG2956  95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDwekaievlerllKLGPENAHAycelaelyLEQGDYDEAIEALEKALKLD 174

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 268 PTLYDAYYNwaiaisdrakiRGRTKEAEELWEQAADNYEKAVQLNWNSSQALNNWGLVLQELSQIVPARE 337
Cdd:COG2956 175 PDCARALLL-----------LAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALE 233
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 208-337 1.34e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.22  E-value: 1.34e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238 208 AARKYASAIERNPDDHDALYNWALILQESADnvspdsvspskddlLEEACKKYDEATRLCPTLYDAYYNWAIAISdrakI 287
Cdd:COG4235   2 AIARLRQALAANPNDAEGWLLLGRAYLRLGR--------------YDEALAAYEKALRLDPDNADALLDLAEALL----A 63

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|
gi 15238238 288 RGRTKEAEELweqaadnYEKAVQLNWNSSQALNNWGLVLQELSQIVPARE 337
Cdd:COG4235  64 AGDTEEAEEL-------LERALALDPDNPEALYLLGLAAFQQGDYAEAIA 106
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
4-149 2.89e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 40.42  E-value: 2.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238    4 TVEEPQLQNGAA----PAESETEQNPIPEPQLQ-----TEPKLTGEIPEIEADLTPEEVQSEVTDAKPeEVQSEVKPEEV 74
Cdd:PRK14960 367 LVSEPVQQNGQAevglNSQAQTAQEITPVSAVQpveviSQPAMVEPEPEPEPEPEPEPEPEPEPEPEP-EPEPEPEPQPN 445

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15238238   75 KTV-VTDAKPEE---AQSEVKPEEVQSVVTDTKPdLTDVDLSPGGSEEiPIRSTEVEQESTTSVLKKDDDGNKTFTMRE 149
Cdd:PRK14960 446 QDLmVFDPNHHEligLESAVVQETVSVLEEDFIP-VPEQKLVQVQAET-QVKQIEPEPASTAEPIGLFEASSAEFSLAQ 522
PRK10819 PRK10819
transport protein TonB; Provisional
 15-104 5.04e-03

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 38.90  E-value: 5.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238   15 APAESETEQNPIPEPQLQTEPKLTGE-IPEIEadlTPEEVQSEVTDAKPEEVqSEVKPEEVKTVVTDAKPEEAQSEVKPE 93
Cdd:PRK10819  54 APADLEPPQAVQPPPEPVVEPEPEPEpIPEPP---KEAPVVIPKPEPKPKPK-PKPKPKPVKKVEEQPKREVKPVEPRPA 129

                         90
                 ....*....|.
gi 15238238   94 EVQSVVTDTKP 104
Cdd:PRK10819 130 SPFENTAPARP 140
DUF4045 pfam13254
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...
 8-92 6.07e-03

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.


Pssm-ID: 433066 [Multi-domain]  Cd Length: 415  Bit Score: 39.38  E-value: 6.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238     8 PQLQNGAAPAESETEQNPIPEPQLQTEPKLTGEIPEIEADLTPEEVQSEVTDAKPEEVQSEVKPEEVKTVVTDAKPEEAQ 87
Cdd:pfam13254 235 EEPSEEADTLSTDKEQSPAPTSASEPPPKTKELPKDSEEPAAPSKSAEASTEKKEPDTESSPETSSEKSAPSLLSPVSKA 314


                  ....*
gi 15238238    88 SEVKP 92
Cdd:pfam13254 315 SIDKP 319
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 5-159 6.84e-03

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 39.59  E-value: 6.84e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238238      5 VEEPQLQNGAAPAESETEQNPIPEPQLQTEPKLTGEIP-EIEADLTPE-EVQSEVTDAKPEEVQSEVKPEEVKTVVTDAK 82
Cdd:TIGR00927  649 GERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPaERKGEQEGEgEIEAKEADHKGETEAEEVEHEGETEAEGTED 728

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15238238     83 PEEAQSEVKPEEVQsvvtdtKPDLTDVDLSPGGSEEIPIRSTEVEQESTTSVLKKDDDGNktfTMRELLSELKSEEG 159
Cdd:TIGR00927  729 EGEIETGEEGEEVE------DEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGE---IQAGEDGEMKGDEG 796
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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