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Conserved domains on  [gi|15238134|ref|NP_198979|]
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hypothetical protein (DUF626) [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
protein_MS5 super family cl19902
Protein MS5; Proteins are known only from species of Brassicaceae. Protein MS5 is essential ...
 75-127 7.19e-08

Protein MS5; Proteins are known only from species of Brassicaceae. Protein MS5 is essential for pairing of homologs during early prophase stage of meiosis but not necessary for the initiation of DNA double-strand breaks.


The actual alignment was detected with superfamily member pfam04776:

Pssm-ID: 450408  Cd Length: 118  Bit Score: 48.78  E-value: 7.19e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15238134    75 AFATTHRSnGKYHDLS-DLKI----FESSEDVEPPNEVSLNVINVIVYIVYKDFYESR 127
Cdd:pfam04776  38 ALYTKWRS-ISDTDLSkLLEIkkvvVETKEEDEPPSERKLKAKNAIFYITFKGLAKAR 94
protein_MS5 super family cl19902
Protein MS5; Proteins are known only from species of Brassicaceae. Protein MS5 is essential ...
 44-68 2.19e-03

Protein MS5; Proteins are known only from species of Brassicaceae. Protein MS5 is essential for pairing of homologs during early prophase stage of meiosis but not necessary for the initiation of DNA double-strand breaks.


The actual alignment was detected with superfamily member TIGR01572:

Pssm-ID: 450408 [Multi-domain]  Cd Length: 265  Bit Score: 37.90  E-value: 2.19e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 15238134    44 LVRLYARMGLHRYNLLK-----LSRVKKYN 68
Cdd:TIGR01572  41 LVKIYARVGLHRYNFLEgtnleLDHVDKFN 70
 
Name Accession Description Interval E-value
protein_MS5 pfam04776
Protein MS5; Proteins are known only from species of Brassicaceae. Protein MS5 is essential ...
 75-127 7.19e-08

Protein MS5; Proteins are known only from species of Brassicaceae. Protein MS5 is essential for pairing of homologs during early prophase stage of meiosis but not necessary for the initiation of DNA double-strand breaks.


Pssm-ID: 428116  Cd Length: 118  Bit Score: 48.78  E-value: 7.19e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15238134    75 AFATTHRSnGKYHDLS-DLKI----FESSEDVEPPNEVSLNVINVIVYIVYKDFYESR 127
Cdd:pfam04776  38 ALYTKWRS-ISDTDLSkLLEIkkvvVETKEEDEPPSERKLKAKNAIFYITFKGLAKAR 94
A_thl_para_3677 TIGR01572
Arabidopsis paralogous family TIGR01572; This model describes a paralogous family of ...
 44-68 2.19e-03

Arabidopsis paralogous family TIGR01572; This model describes a paralogous family of hypothetical proteins in Arabidopsis thaliana. No homologs are detected from other species. Length heterogeneity within the family is attributable partly to a 21-residue repeat present in from zero to three tandem copies. The central region of the repeat resembles the pattern [VIF][FY][QK]GX[LM]P[DEK]XXXDDAL.


Pssm-ID: 273698 [Multi-domain]  Cd Length: 265  Bit Score: 37.90  E-value: 2.19e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 15238134    44 LVRLYARMGLHRYNLLK-----LSRVKKYN 68
Cdd:TIGR01572  41 LVKIYARVGLHRYNFLEgtnleLDHVDKFN 70
 
Name Accession Description Interval E-value
protein_MS5 pfam04776
Protein MS5; Proteins are known only from species of Brassicaceae. Protein MS5 is essential ...
 75-127 7.19e-08

Protein MS5; Proteins are known only from species of Brassicaceae. Protein MS5 is essential for pairing of homologs during early prophase stage of meiosis but not necessary for the initiation of DNA double-strand breaks.


Pssm-ID: 428116  Cd Length: 118  Bit Score: 48.78  E-value: 7.19e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15238134    75 AFATTHRSnGKYHDLS-DLKI----FESSEDVEPPNEVSLNVINVIVYIVYKDFYESR 127
Cdd:pfam04776  38 ALYTKWRS-ISDTDLSkLLEIkkvvVETKEEDEPPSERKLKAKNAIFYITFKGLAKAR 94
A_thl_para_3677 TIGR01572
Arabidopsis paralogous family TIGR01572; This model describes a paralogous family of ...
 44-68 2.19e-03

Arabidopsis paralogous family TIGR01572; This model describes a paralogous family of hypothetical proteins in Arabidopsis thaliana. No homologs are detected from other species. Length heterogeneity within the family is attributable partly to a 21-residue repeat present in from zero to three tandem copies. The central region of the repeat resembles the pattern [VIF][FY][QK]GX[LM]P[DEK]XXXDDAL.


Pssm-ID: 273698 [Multi-domain]  Cd Length: 265  Bit Score: 37.90  E-value: 2.19e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 15238134    44 LVRLYARMGLHRYNLLK-----LSRVKKYN 68
Cdd:TIGR01572  41 LVKIYARVGLHRYNFLEgtnleLDHVDKFN 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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