GATA transcription factor 12 [Arabidopsis thaliana]
GATA-type transcription factor( domain architecture ID 12207019)
GATA-type transcription factor binds to the DNA consensus sequence [AT]GATA[AG] and may function as a transcription factor/regulator
List of domain hits
Name | Accession | Description | Interval | E-value | ||
ZnF_GATA | smart00401 | zinc finger binding to DNA consensus sequence [AT]GATA[AG]; |
217-265 | 6.51e-17 | ||
zinc finger binding to DNA consensus sequence [AT]GATA[AG]; : Pssm-ID: 214648 [Multi-domain] Cd Length: 52 Bit Score: 73.61 E-value: 6.51e-17
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Name | Accession | Description | Interval | E-value | ||
ZnF_GATA | smart00401 | zinc finger binding to DNA consensus sequence [AT]GATA[AG]; |
217-265 | 6.51e-17 | ||
zinc finger binding to DNA consensus sequence [AT]GATA[AG]; Pssm-ID: 214648 [Multi-domain] Cd Length: 52 Bit Score: 73.61 E-value: 6.51e-17
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GATA | pfam00320 | GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ... |
221-255 | 7.88e-15 | ||
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain. Pssm-ID: 425605 [Multi-domain] Cd Length: 36 Bit Score: 67.34 E-value: 7.88e-15
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ZnF_GATA | cd00202 | Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ... |
220-267 | 1.56e-14 | ||
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C Pssm-ID: 238123 [Multi-domain] Cd Length: 54 Bit Score: 67.01 E-value: 1.56e-14
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Name | Accession | Description | Interval | E-value | ||
ZnF_GATA | smart00401 | zinc finger binding to DNA consensus sequence [AT]GATA[AG]; |
217-265 | 6.51e-17 | ||
zinc finger binding to DNA consensus sequence [AT]GATA[AG]; Pssm-ID: 214648 [Multi-domain] Cd Length: 52 Bit Score: 73.61 E-value: 6.51e-17
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GATA | pfam00320 | GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ... |
221-255 | 7.88e-15 | ||
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain. Pssm-ID: 425605 [Multi-domain] Cd Length: 36 Bit Score: 67.34 E-value: 7.88e-15
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ZnF_GATA | cd00202 | Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ... |
220-267 | 1.56e-14 | ||
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C Pssm-ID: 238123 [Multi-domain] Cd Length: 54 Bit Score: 67.01 E-value: 1.56e-14
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Blast search parameters | ||||
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