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Conserved domains on  [gi|15241267|ref|NP_197510|]
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plant/protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4666 super family cl24312
Domain of unknown function (DUF4666); This family of proteins is found in plants. Proteins in ...
 1-99 2.50e-21

Domain of unknown function (DUF4666); This family of proteins is found in plants. Proteins in this family are typically between 103 and 140 amino acids in length. There are two conserved sequence motifs: LQRS and FRR.


The actual alignment was detected with superfamily member pfam15697:

Pssm-ID: 464809  Cd Length: 109  Bit Score: 81.30  E-value: 2.50e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241267     1 MA-LQRSTASFRRQGSSGLIWNDRFLSGEI--RNDERQEDRCNDH------RDGSMAATTATVKRSASDGGCGHGG-RLG 70
Cdd:pfam15697   1 MAgLQRSSTTFRRSGSSGLVWDERLLNEEQehEAQAKRGDGGEESlepkelRHSRSVGSIGMMERRRSNGGGAQRVfRTG 80

                          90       100
                  ....*....|....*....|....*....
gi 15241267    71 ELSPALDPPSPKISavGCGFCSLFSSNGK 99
Cdd:pfam15697  81 RVSPAVDPPSPRVS--GCGFCGIFGKKGP 107
 
Name Accession Description Interval E-value
DUF4666 pfam15697
Domain of unknown function (DUF4666); This family of proteins is found in plants. Proteins in ...
 1-99 2.50e-21

Domain of unknown function (DUF4666); This family of proteins is found in plants. Proteins in this family are typically between 103 and 140 amino acids in length. There are two conserved sequence motifs: LQRS and FRR.


Pssm-ID: 464809  Cd Length: 109  Bit Score: 81.30  E-value: 2.50e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241267     1 MA-LQRSTASFRRQGSSGLIWNDRFLSGEI--RNDERQEDRCNDH------RDGSMAATTATVKRSASDGGCGHGG-RLG 70
Cdd:pfam15697   1 MAgLQRSSTTFRRSGSSGLVWDERLLNEEQehEAQAKRGDGGEESlepkelRHSRSVGSIGMMERRRSNGGGAQRVfRTG 80

                          90       100
                  ....*....|....*....|....*....
gi 15241267    71 ELSPALDPPSPKISavGCGFCSLFSSNGK 99
Cdd:pfam15697  81 RVSPAVDPPSPRVS--GCGFCGIFGKKGP 107
 
Name Accession Description Interval E-value
DUF4666 pfam15697
Domain of unknown function (DUF4666); This family of proteins is found in plants. Proteins in ...
 1-99 2.50e-21

Domain of unknown function (DUF4666); This family of proteins is found in plants. Proteins in this family are typically between 103 and 140 amino acids in length. There are two conserved sequence motifs: LQRS and FRR.


Pssm-ID: 464809  Cd Length: 109  Bit Score: 81.30  E-value: 2.50e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241267     1 MA-LQRSTASFRRQGSSGLIWNDRFLSGEI--RNDERQEDRCNDH------RDGSMAATTATVKRSASDGGCGHGG-RLG 70
Cdd:pfam15697   1 MAgLQRSSTTFRRSGSSGLVWDERLLNEEQehEAQAKRGDGGEESlepkelRHSRSVGSIGMMERRRSNGGGAQRVfRTG 80

                          90       100
                  ....*....|....*....|....*....
gi 15241267    71 ELSPALDPPSPKISavGCGFCSLFSSNGK 99
Cdd:pfam15697  81 RVSPAVDPPSPRVS--GCGFCGIFGKKGP 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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