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Conserved domains on  [gi|15242266|ref|NP_197032|]
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Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 391-440 8.07e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.45  E-value: 8.07e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 15242266    391 PDVYSYNAILSGLFRKGLWQHTHCILDEMKENGMMLSLSTFKIMVTGYCK 440
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 935-1153 1.48e-07

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 56.04  E-value: 1.48e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242266   935 MQGRGVLPDETTFNFLVHGYSSSADYSSSLRYLSAMI--SKGMKPNNRSLRAVTSSLCDNGDVKKALDLWQVMESKGWNl 1012
Cdd:PLN03218  533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKaeTHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK- 611

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242266  1013 GSSVVQTKIVETLISKGEIPKAEDFLTRVTRNGMmAPN---YDNIIKKLSDRGNLDIAVHLLNTMLKNQSIPGSSSYDSV 1089
Cdd:PLN03218  612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV-KPDevfFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15242266  1090 INGLLRYNQLDKAMDFHTEMVELGLSPSISTWSGLVHKFCEACQVLESERLIKSMVGLGESPSQ 1153
Cdd:PLN03218  691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 357-405 3.60e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 47.74  E-value: 3.60e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15242266    357 DEVTFGILIGWCCYEGDIKRAVLYLSEIMSKGYKPDVYSYNAILSGLFR 405
Cdd:pfam13041    2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 super family cl38385
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 908-953 1.38e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


The actual alignment was detected with superfamily member pfam13041:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 46.20  E-value: 1.38e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 15242266    908 GVIIYNMLIFYMFRAKNHLEVNKVLLEMQGRGVLPDETTFNFLVHG 953
Cdd:pfam13041    2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILING 47
PLN03081 super family cl33631
pentatricopeptide (PPR) repeat-containing protein; Provisional
 331-641 3.31e-05

pentatricopeptide (PPR) repeat-containing protein; Provisional


The actual alignment was detected with superfamily member PLN03081:

Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 48.33  E-value: 3.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242266   331 HSLCRRFgsERAYVYMEELE-HLGFKQDEVTFGILIGWCCYEGDIKRAVLYLSEIMSKGYKPDVYSYNAILSGLFRKGLW 409
Cdd:PLN03081   97 LVACGRH--REALELFEILEaGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242266   410 QHTHCILDEMKENgmmlSLSTFKIMVTGYCKARQFEEAKRIVNKMFGYGLIEASKVEDPLSEAFSLVGfdplAVRLKRDN 489
Cdd:PLN03081  175 IDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG----SARAGQQL 246

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242266   490 DSTFSKAEFFDD--LGNGLylhtdLDAYE--------QRVNMVLDRSVLPEFNSLIVRASEDGDLQTALRLLDEMARWGQ 559
Cdd:PLN03081  247 HCCVLKTGVVGDtfVSCAL-----IDMYSkcgdiedaRCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242266   560 KLSRRSFAVLMRsLCASRAHLRVSISLLEKWPKLAYQLDGETLNFLVQEYCKKGFSRHSKLIFHKMvqmhhPIDNV-TYT 638
Cdd:PLN03081  322 SIDQFTFSIMIR-IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM-----PRKNLiSWN 395


                  ...
gi 15242266   639 SLI 641
Cdd:PLN03081  396 ALI 398
PPR_2 super family cl38385
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 742-786 1.38e-03

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


The actual alignment was detected with superfamily member pfam13041:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 37.73  E-value: 1.38e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 15242266    742 YNHLIKGLCTEKKDSAAFAILDEMLDKKHIPSLGSCLMLIPRLCR 786
Cdd:pfam13041    6 YNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 840-873 2.40e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


:

Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.66  E-value: 2.40e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 15242266    840 IYNVMFQGYCKGNNWMKVEEVLGLMVRKNIICSV 873
Cdd:TIGR00756    2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
 
Name Accession Description Interval E-value
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 391-440 8.07e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.45  E-value: 8.07e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 15242266    391 PDVYSYNAILSGLFRKGLWQHTHCILDEMKENGMMLSLSTFKIMVTGYCK 440
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 935-1153 1.48e-07

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 56.04  E-value: 1.48e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242266   935 MQGRGVLPDETTFNFLVHGYSSSADYSSSLRYLSAMI--SKGMKPNNRSLRAVTSSLCDNGDVKKALDLWQVMESKGWNl 1012
Cdd:PLN03218  533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKaeTHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK- 611

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242266  1013 GSSVVQTKIVETLISKGEIPKAEDFLTRVTRNGMmAPN---YDNIIKKLSDRGNLDIAVHLLNTMLKNQSIPGSSSYDSV 1089
Cdd:PLN03218  612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV-KPDevfFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15242266  1090 INGLLRYNQLDKAMDFHTEMVELGLSPSISTWSGLVHKFCEACQVLESERLIKSMVGLGESPSQ 1153
Cdd:PLN03218  691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 1081-1129 3.57e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 47.74  E-value: 3.57e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15242266   1081 PGSSSYDSVINGLLRYNQLDKAMDFHTEMVELGLSPSISTWSGLVHKFC 1129
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 357-405 3.60e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 47.74  E-value: 3.60e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15242266    357 DEVTFGILIGWCCYEGDIKRAVLYLSEIMSKGYKPDVYSYNAILSGLFR 405
Cdd:pfam13041    2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 317-459 1.18e-06

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 52.96  E-value: 1.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242266   317 VKYEPDVFVgnrILHSLCRRFGS-ERAYVYMEELEHLGFKQDEVTFGILIGWCCYEGDIKRAVLYLSEIMSKGYKPDVYS 395
Cdd:PLN03218  610 IKGTPEVYT---IAVNSCSQKGDwDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15242266   396 YNAILSGLFRKGLWQHTHCILDEMKENGMMLSLSTFKIMVTGYCKARQFEEAKRIVNKMFGYGL 459
Cdd:PLN03218  687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 908-953 1.38e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 46.20  E-value: 1.38e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 15242266    908 GVIIYNMLIFYMFRAKNHLEVNKVLLEMQGRGVLPDETTFNFLVHG 953
Cdd:pfam13041    2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILING 47
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 331-641 3.31e-05

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 48.33  E-value: 3.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242266   331 HSLCRRFgsERAYVYMEELE-HLGFKQDEVTFGILIGWCCYEGDIKRAVLYLSEIMSKGYKPDVYSYNAILSGLFRKGLW 409
Cdd:PLN03081   97 LVACGRH--REALELFEILEaGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242266   410 QHTHCILDEMKENgmmlSLSTFKIMVTGYCKARQFEEAKRIVNKMFGYGLIEASKVEDPLSEAFSLVGfdplAVRLKRDN 489
Cdd:PLN03081  175 IDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG----SARAGQQL 246

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242266   490 DSTFSKAEFFDD--LGNGLylhtdLDAYE--------QRVNMVLDRSVLPEFNSLIVRASEDGDLQTALRLLDEMARWGQ 559
Cdd:PLN03081  247 HCCVLKTGVVGDtfVSCAL-----IDMYSkcgdiedaRCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242266   560 KLSRRSFAVLMRsLCASRAHLRVSISLLEKWPKLAYQLDGETLNFLVQEYCKKGFSRHSKLIFHKMvqmhhPIDNV-TYT 638
Cdd:PLN03081  322 SIDQFTFSIMIR-IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM-----PRKNLiSWN 395


                  ...
gi 15242266   639 SLI 641
Cdd:PLN03081  396 ALI 398
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 601-646 9.51e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 41.19  E-value: 9.51e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 15242266    601 TLNFLVQEYCKKGFSRHSKLIFHKMVQMHHPIDNVTYTSLIRCFCK 646
Cdd:pfam13041    5 TYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 742-786 1.38e-03

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 37.73  E-value: 1.38e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 15242266    742 YNHLIKGLCTEKKDSAAFAILDEMLDKKHIPSLGSCLMLIPRLCR 786
Cdd:pfam13041    6 YNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 840-873 2.40e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.66  E-value: 2.40e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 15242266    840 IYNVMFQGYCKGNNWMKVEEVLGLMVRKNIICSV 873
Cdd:TIGR00756    2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 1085-1118 2.50e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.66  E-value: 2.50e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 15242266   1085 SYDSVINGLLRYNQLDKAMDFHTEMVELGLSPSI 1118
Cdd:TIGR00756    2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 394-424 4.78e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.89  E-value: 4.78e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 15242266    394 YSYNAILSGLFRKGLWQHTHCILDEMKENGM 424
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
 
Name Accession Description Interval E-value
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 391-440 8.07e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.45  E-value: 8.07e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 15242266    391 PDVYSYNAILSGLFRKGLWQHTHCILDEMKENGMMLSLSTFKIMVTGYCK 440
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 935-1153 1.48e-07

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 56.04  E-value: 1.48e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242266   935 MQGRGVLPDETTFNFLVHGYSSSADYSSSLRYLSAMI--SKGMKPNNRSLRAVTSSLCDNGDVKKALDLWQVMESKGWNl 1012
Cdd:PLN03218  533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKaeTHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK- 611

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242266  1013 GSSVVQTKIVETLISKGEIPKAEDFLTRVTRNGMmAPN---YDNIIKKLSDRGNLDIAVHLLNTMLKNQSIPGSSSYDSV 1089
Cdd:PLN03218  612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV-KPDevfFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15242266  1090 INGLLRYNQLDKAMDFHTEMVELGLSPSISTWSGLVHKFCEACQVLESERLIKSMVGLGESPSQ 1153
Cdd:PLN03218  691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 1081-1129 3.57e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 47.74  E-value: 3.57e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15242266   1081 PGSSSYDSVINGLLRYNQLDKAMDFHTEMVELGLSPSISTWSGLVHKFC 1129
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 357-405 3.60e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 47.74  E-value: 3.60e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15242266    357 DEVTFGILIGWCCYEGDIKRAVLYLSEIMSKGYKPDVYSYNAILSGLFR 405
Cdd:pfam13041    2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 317-459 1.18e-06

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 52.96  E-value: 1.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242266   317 VKYEPDVFVgnrILHSLCRRFGS-ERAYVYMEELEHLGFKQDEVTFGILIGWCCYEGDIKRAVLYLSEIMSKGYKPDVYS 395
Cdd:PLN03218  610 IKGTPEVYT---IAVNSCSQKGDwDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15242266   396 YNAILSGLFRKGLWQHTHCILDEMKENGMMLSLSTFKIMVTGYCKARQFEEAKRIVNKMFGYGL 459
Cdd:PLN03218  687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 908-953 1.38e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 46.20  E-value: 1.38e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 15242266    908 GVIIYNMLIFYMFRAKNHLEVNKVLLEMQGRGVLPDETTFNFLVHG 953
Cdd:pfam13041    2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILING 47
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 331-641 3.31e-05

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 48.33  E-value: 3.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242266   331 HSLCRRFgsERAYVYMEELE-HLGFKQDEVTFGILIGWCCYEGDIKRAVLYLSEIMSKGYKPDVYSYNAILSGLFRKGLW 409
Cdd:PLN03081   97 LVACGRH--REALELFEILEaGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242266   410 QHTHCILDEMKENgmmlSLSTFKIMVTGYCKARQFEEAKRIVNKMFGYGLIEASKVEDPLSEAFSLVGfdplAVRLKRDN 489
Cdd:PLN03081  175 IDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG----SARAGQQL 246

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242266   490 DSTFSKAEFFDD--LGNGLylhtdLDAYE--------QRVNMVLDRSVLPEFNSLIVRASEDGDLQTALRLLDEMARWGQ 559
Cdd:PLN03081  247 HCCVLKTGVVGDtfVSCAL-----IDMYSkcgdiedaRCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242266   560 KLSRRSFAVLMRsLCASRAHLRVSISLLEKWPKLAYQLDGETLNFLVQEYCKKGFSRHSKLIFHKMvqmhhPIDNV-TYT 638
Cdd:PLN03081  322 SIDQFTFSIMIR-IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM-----PRKNLiSWN 395


                  ...
gi 15242266   639 SLI 641
Cdd:PLN03081  396 ALI 398
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 601-646 9.51e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 41.19  E-value: 9.51e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 15242266    601 TLNFLVQEYCKKGFSRHSKLIFHKMVQMHHPIDNVTYTSLIRCFCK 646
Cdd:pfam13041    5 TYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 930-1102 9.19e-04

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 43.71  E-value: 9.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242266   930 KVLLEMQGRGVLPDETTFNFLVHGYSSSADYSSSLRYLSAMISKGMKPNNRSLRAVTSSLCDNGDVKKALDLWQVMESKG 1009
Cdd:PLN03218  635 SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242266  1010 WNLGSSVVQTKIveTLISKGE-IPKAEDFLTRVTRNGMMaPN---YDNIIKKLSDRGNLDIAVHLLNTMLKNQSIPGSSS 1085
Cdd:PLN03218  715 LRPTVSTMNALI--TALCEGNqLPKALEVLSEMKRLGLC-PNtitYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM 791

                         170
                  ....*....|....*..
gi 15242266  1086 YDSVINGLLRynQLDKA 1102
Cdd:PLN03218  792 CRCITGLCLR--RFEKA 806
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 531-574 9.99e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 38.11  E-value: 9.99e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 15242266    531 FNSLIVRASEDGDLQTALRLLDEMARWGQKLSRRSFAVLMRSLC 574
Cdd:pfam13041    6 YNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 742-786 1.38e-03

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 37.73  E-value: 1.38e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 15242266    742 YNHLIKGLCTEKKDSAAFAILDEMLDKKHIPSLGSCLMLIPRLCR 786
Cdd:pfam13041    6 YNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 381-431 1.48e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 38.11  E-value: 1.48e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 15242266    381 LSEIMSKGYKPDVYSYNAILSGLFRKGLWQHTHCILDEMKENGMMLSLSTF 431
Cdd:pfam13812    3 LREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTY 53
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 360-466 1.97e-03

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 42.56  E-value: 1.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242266   360 TFGILIGWCCYEGDIKRAVLYLSEIMSKGYKPDVYSYNAILSGLFRKGLWQHTHCILDEMKENGMMLSLSTFKIMVTGYC 439
Cdd:PLN03218  439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518

                          90       100
                  ....*....|....*....|....*...
gi 15242266   440 KARQfeeakriVNKMFG-YGLIEASKVE 466
Cdd:PLN03218  519 RAGQ-------VAKAFGaYGIMRSKNVK 539
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 840-873 2.40e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.66  E-value: 2.40e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 15242266    840 IYNVMFQGYCKGNNWMKVEEVLGLMVRKNIICSV 873
Cdd:TIGR00756    2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 387-420 2.46e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 36.55  E-value: 2.46e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 15242266    387 KGYKPDVYSYNAILSGLFRKGLWQHTHCILDEMK 420
Cdd:pfam12854    1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 1085-1118 2.50e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.66  E-value: 2.50e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 15242266   1085 SYDSVINGLLRYNQLDKAMDFHTEMVELGLSPSI 1118
Cdd:TIGR00756    2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 394-424 4.78e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.89  E-value: 4.78e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 15242266    394 YSYNAILSGLFRKGLWQHTHCILDEMKENGM 424
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 321-369 5.28e-03

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 36.19  E-value: 5.28e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15242266    321 PDVFVGNRILHSLCRRFGSERAYVYMEELEHLGFKQDEVTFGILIGWCC 369
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 347-401 6.74e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 36.18  E-value: 6.74e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 15242266    347 EELEHLGFKQDEVTFGILIGWCCYEGDIKRAVLYLSEIMSKGYKPDVYSYNAILS 401
Cdd:pfam13812    4 REMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILG 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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