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Conserved domains on  [gi|1063728846|ref|NP_196938|]
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myb domain protein 40 [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03091 super family cl33633
hypothetical protein; Provisional
 13-194 1.07e-68

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 219.46  E-value: 1.07e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063728846  13 MGRKPCCDKIGLKRGPWTIEEDHRLMNFILNNGIHCWRIVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTDAEEDRIME 92
Cdd:PLN03091    1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063728846  93 LHSQLGNRWSKIASHFSGRTDNEIKNHWNTKIKKKMKHLGLDPATHKPMNDITHQTD--PNQDKKPNMCSTI--NEGEEI 168
Cdd:PLN03091   81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENGEDknPPTDDKSDKASSVvsNELNLL 160

                         170       180
                  ....*....|....*....|....*.
gi 1063728846 169 KDQTPKDDVITETTKTLMLSDNDEEL 194
Cdd:PLN03091  161 KADNSKPLAALQEKRSSSISPAGYQL 186
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 13-194 1.07e-68

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 219.46  E-value: 1.07e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063728846  13 MGRKPCCDKIGLKRGPWTIEEDHRLMNFILNNGIHCWRIVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTDAEEDRIME 92
Cdd:PLN03091    1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063728846  93 LHSQLGNRWSKIASHFSGRTDNEIKNHWNTKIKKKMKHLGLDPATHKPMNDITHQTD--PNQDKKPNMCSTI--NEGEEI 168
Cdd:PLN03091   81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENGEDknPPTDDKSDKASSVvsNELNLL 160

                         170       180
                  ....*....|....*....|....*.
gi 1063728846 169 KDQTPKDDVITETTKTLMLSDNDEEL 194
Cdd:PLN03091  161 KADNSKPLAALQEKRSSSISPAGYQL 186
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 79-122 5.17e-14

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 64.83  E-value: 5.17e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1063728846  79 RGGFTDAEEDRIMELHSQLGNRWSKIASHFSGRTDNEIKNHWNT 122
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQN 44
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 24-121 3.36e-13

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 69.05  E-value: 3.36e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063728846  24 LKRGPWTIEEDHRLMNFILNNGIHCWRIVPKLAGLlRCGKSCRLRWINYLRPDLKRGGFTDAEEDRIMELHSQLGNRWSK 103
Cdd:COG5147    18 RKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWST 96

                          90
                  ....*....|....*...
gi 1063728846 104 IASHFSGRTDNEIKNHWN 121
Cdd:COG5147    97 IADYKDRRTAQQCVERYV 114
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
79-126 4.08e-09

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 51.46  E-value: 4.08e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1063728846   79 RGGFTDAEEDRIMELHSQLG-NRWSKIASHFSGRTDNEIKNHWNTKIKK 126
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 82-122 9.49e-09

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 50.27  E-value: 9.49e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1063728846  82 FTDAEEDRIMELHSQLG-NRWSKIASHFSGRTDNEIKNHWNT 122
Cdd:cd00167     2 WTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRN 43
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 13-194 1.07e-68

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 219.46  E-value: 1.07e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063728846  13 MGRKPCCDKIGLKRGPWTIEEDHRLMNFILNNGIHCWRIVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTDAEEDRIME 92
Cdd:PLN03091    1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063728846  93 LHSQLGNRWSKIASHFSGRTDNEIKNHWNTKIKKKMKHLGLDPATHKPMNDITHQTD--PNQDKKPNMCSTI--NEGEEI 168
Cdd:PLN03091   81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENGEDknPPTDDKSDKASSVvsNELNLL 160

                         170       180
                  ....*....|....*....|....*.
gi 1063728846 169 KDQTPKDDVITETTKTLMLSDNDEEL 194
Cdd:PLN03091  161 KADNSKPLAALQEKRSSSISPAGYQL 186
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 4-156 2.54e-59

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 189.13  E-value: 2.54e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063728846   4 LLACLRKISMGRK--PCCDKIGLKRGPWTIEEDHRLMNFILNNGIHCWRIVPKLAGLLRCGKSCRLRWINYLRPDLKRGG 81
Cdd:PLN03212    1 MMSCGGKKPVSKKttPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGG 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1063728846  82 FTDAEEDRIMELHSQLGNRWSKIASHFSGRTDNEIKNHWNTKIKKKMKHLGLDPATHKPMndithqtDPNQDKKP 156
Cdd:PLN03212   81 ITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPL-------DANNIHKP 148
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 79-122 5.17e-14

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 64.83  E-value: 5.17e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1063728846  79 RGGFTDAEEDRIMELHSQLGNRWSKIASHFSGRTDNEIKNHWNT 122
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQN 44
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 24-121 3.36e-13

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 69.05  E-value: 3.36e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063728846  24 LKRGPWTIEEDHRLMNFILNNGIHCWRIVPKLAGLlRCGKSCRLRWINYLRPDLKRGGFTDAEEDRIMELHSQLGNRWSK 103
Cdd:COG5147    18 RKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWST 96

                          90
                  ....*....|....*...
gi 1063728846 104 IASHFSGRTDNEIKNHWN 121
Cdd:COG5147    97 IADYKDRRTAQQCVERYV 114
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
79-126 4.08e-09

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 51.46  E-value: 4.08e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1063728846   79 RGGFTDAEEDRIMELHSQLG-NRWSKIASHFSGRTDNEIKNHWNTKIKK 126
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 26-73 8.18e-09

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 50.58  E-value: 8.18e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1063728846  26 RGPWTIEEDHRLMNFILNNGiHCWRIVPKLAGLlRCGKSCRLRWINYL 73
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLG-NRWKKIAKLLPG-RTDNQCKNRWQNYL 46
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 82-122 9.49e-09

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 50.27  E-value: 9.49e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1063728846  82 FTDAEEDRIMELHSQLG-NRWSKIASHFSGRTDNEIKNHWNT 122
Cdd:cd00167     2 WTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRN 43
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 82-130 1.03e-08

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 50.77  E-value: 1.03e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1063728846  82 FTDAEEDRIMELHSQLGNRWSKIASHFSGRTDNEIKNHWNTKIKKKMKH 130
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLNPKISR 49
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 29-90 7.80e-06

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 42.68  E-value: 7.80e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1063728846  29 WTIEEDHRLMNFILNNGIHcWRIVPKLAGLlRCGKSCRLRWINYLRPDLKRGGFTDAEEDRI 90
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGND-WKQIAKELGR-RTPKQCFDRWRRKLNPKISRGPWSKEEDQRL 60
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
26-75 4.24e-04

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 37.20  E-value: 4.24e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1063728846   26 RGPWTIEEDHRLMNFILNNGIHCWRIVPKLAGLlRCGKSCRLRWINYLRP 75
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 28-73 1.56e-03

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 35.63  E-value: 1.56e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1063728846  28 PWTIEEDHRLMNFILNNGIHCWRIVPKLAGLlRCGKSCRLRWINYL 73
Cdd:cd00167     1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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