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Conserved domains on  [gi|15233732|ref|NP_195531|]
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FAR1-related sequence 5 [Arabidopsis thaliana]

Protein Classification

FHY3/FAR1 family protein( domain architecture ID 1001808)

FHY3/FAR1 family protein similar to FAR-RED ELONGATED HYPOCOTYL 3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) which are transcription factors that play multiple roles in a wide range of cellular processes and are crucial for plant growth and development, and to transposases of the Mutator-like element (MULE)

Gene Ontology:  GO:0003677
PubMed:  15591448

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
FHY3 super family cl31971
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 69-689 8.89e-176

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


The actual alignment was detected with superfamily member PLN03097:

Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 526.87  E-value: 8.89e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233732   69 LDLEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGfrnmnEKRTKDREIKRPR----- 143
Cdd:PLN03097  70 TNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYG-----TKREYDKSFNRPRarqtk 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233732  144 ----------TITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELVPPdqvhclrshrqisgpaktlidtlQAAGMGPRRI 213
Cdd:PLN03097 145 qdpengtgrrSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPA-----------------------QAVSEQTRKM 201

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233732  214 MSALIKEYGGISKVGFTEVDCRNYMRNNRQKSIE-GEIQLLLDYLRQMNADNPNFFYSVQGSEDQSVGNVFWADPKAIMD 292
Cdd:PLN03097 202 YAAMARQFAEYKNVVGLKNDSKSSFDKGRNLGLEaGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHD 281

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233732  293 FTHFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPILFGCAFIINETEASFVWLFNTWLAAMSAHPPVSITTDHDAVIRA 372
Cdd:PLN03097 282 YGNFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKS 361

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233732  373 AIMHVFPGARHRFCKWHILKKCQEKLSHVFLKHPSFESDFHKCVNLTESVEDFERCWFSLLDKYELRDHEWLQAIYSDRR 452
Cdd:PLN03097 362 VISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRK 441

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233732  453 QWVPVYLRDTFFADMSLTHRSDSINSYFDGYINASTNLSQFFKLYEKALESRLEKEVKADYDTMNSPPVLKTPSPMEKQA 532
Cdd:PLN03097 442 QWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSV 521

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233732  533 SELYTRKLFMRFQEELVGTLTFMASKADDDGDLVTYQVAKYgEAHKAHFVKFNVLEMRANCSCQMFEFSGIICRHILAVF 612
Cdd:PLN03097 522 SGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDF-EKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVL 600

                        570       580       590       600       610       620       630
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15233732  613 RVTNLLTLPPYYILKRWTRNAKSSvifddYNLHAYANYLESHTVRYNTLRHKASNFVQEAGKSLYTCDVAVVALQEA 689
Cdd:PLN03097 601 QMCQLSAIPSQYILKRWTKDAKSR-----HLLGEESEQVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEA 672
 
Name Accession Description Interval E-value
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 69-689 8.89e-176

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 526.87  E-value: 8.89e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233732   69 LDLEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGfrnmnEKRTKDREIKRPR----- 143
Cdd:PLN03097  70 TNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYG-----TKREYDKSFNRPRarqtk 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233732  144 ----------TITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELVPPdqvhclrshrqisgpaktlidtlQAAGMGPRRI 213
Cdd:PLN03097 145 qdpengtgrrSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPA-----------------------QAVSEQTRKM 201

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233732  214 MSALIKEYGGISKVGFTEVDCRNYMRNNRQKSIE-GEIQLLLDYLRQMNADNPNFFYSVQGSEDQSVGNVFWADPKAIMD 292
Cdd:PLN03097 202 YAAMARQFAEYKNVVGLKNDSKSSFDKGRNLGLEaGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHD 281

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233732  293 FTHFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPILFGCAFIINETEASFVWLFNTWLAAMSAHPPVSITTDHDAVIRA 372
Cdd:PLN03097 282 YGNFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKS 361

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233732  373 AIMHVFPGARHRFCKWHILKKCQEKLSHVFLKHPSFESDFHKCVNLTESVEDFERCWFSLLDKYELRDHEWLQAIYSDRR 452
Cdd:PLN03097 362 VISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRK 441

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233732  453 QWVPVYLRDTFFADMSLTHRSDSINSYFDGYINASTNLSQFFKLYEKALESRLEKEVKADYDTMNSPPVLKTPSPMEKQA 532
Cdd:PLN03097 442 QWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSV 521

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233732  533 SELYTRKLFMRFQEELVGTLTFMASKADDDGDLVTYQVAKYgEAHKAHFVKFNVLEMRANCSCQMFEFSGIICRHILAVF 612
Cdd:PLN03097 522 SGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDF-EKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVL 600

                        570       580       590       600       610       620       630
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15233732  613 RVTNLLTLPPYYILKRWTRNAKSSvifddYNLHAYANYLESHTVRYNTLRHKASNFVQEAGKSLYTCDVAVVALQEA 689
Cdd:PLN03097 601 QMCQLSAIPSQYILKRWTKDAKSR-----HLLGEESEQVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEA 672
MULE pfam10551
MULE transposase domain; This domain was identified by Babu and colleagues.
 300-393 5.78e-34

MULE transposase domain; This domain was identified by Babu and colleagues.


Pssm-ID: 463145 [Multi-domain]  Cd Length: 98  Bit Score: 125.07  E-value: 5.78e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233732   300 VTFDTTYRSNRYRLPFAPFTGVNHHGQPILFGCAFIINETEASFVWLF---NTWLAAMSAHPPVSITTDHDAVIRAAIMH 376
Cdd:pfam10551   2 LLIDGTYKTNKYKMPLFTAVGVDHHGQSFPIAFGLVSNETEESFTWLFdqlIAFRECMSGLSPQVIITDRDKALKNAINL 81

                          90
                  ....*....|....*..
gi 15233732   377 VFPGARHRFCKWHILKK 393
Cdd:pfam10551  82 VFPEAQHRLCIFHINKN 98
ZnF_PMZ smart00575
plant mutator transposase zinc finger;
593-617 1.53e-07

plant mutator transposase zinc finger;


Pssm-ID: 128845  Cd Length: 28  Bit Score: 47.94  E-value: 1.53e-07
                           10        20
                   ....*....|....*....|....*
gi 15233732    593 CSCQMFEFSGIICRHILAVFRVTNL 617
Cdd:smart00575   3 CSCRKFQLSGIPCRHALAAAIHIGL 27
 
Name Accession Description Interval E-value
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 69-689 8.89e-176

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 526.87  E-value: 8.89e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233732   69 LDLEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGfrnmnEKRTKDREIKRPR----- 143
Cdd:PLN03097  70 TNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYG-----TKREYDKSFNRPRarqtk 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233732  144 ----------TITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELVPPdqvhclrshrqisgpaktlidtlQAAGMGPRRI 213
Cdd:PLN03097 145 qdpengtgrrSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPA-----------------------QAVSEQTRKM 201

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233732  214 MSALIKEYGGISKVGFTEVDCRNYMRNNRQKSIE-GEIQLLLDYLRQMNADNPNFFYSVQGSEDQSVGNVFWADPKAIMD 292
Cdd:PLN03097 202 YAAMARQFAEYKNVVGLKNDSKSSFDKGRNLGLEaGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHD 281

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233732  293 FTHFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPILFGCAFIINETEASFVWLFNTWLAAMSAHPPVSITTDHDAVIRA 372
Cdd:PLN03097 282 YGNFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKS 361

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233732  373 AIMHVFPGARHRFCKWHILKKCQEKLSHVFLKHPSFESDFHKCVNLTESVEDFERCWFSLLDKYELRDHEWLQAIYSDRR 452
Cdd:PLN03097 362 VISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRK 441

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233732  453 QWVPVYLRDTFFADMSLTHRSDSINSYFDGYINASTNLSQFFKLYEKALESRLEKEVKADYDTMNSPPVLKTPSPMEKQA 532
Cdd:PLN03097 442 QWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSV 521

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233732  533 SELYTRKLFMRFQEELVGTLTFMASKADDDGDLVTYQVAKYgEAHKAHFVKFNVLEMRANCSCQMFEFSGIICRHILAVF 612
Cdd:PLN03097 522 SGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDF-EKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVL 600

                        570       580       590       600       610       620       630
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15233732  613 RVTNLLTLPPYYILKRWTRNAKSSvifddYNLHAYANYLESHTVRYNTLRHKASNFVQEAGKSLYTCDVAVVALQEA 689
Cdd:PLN03097 601 QMCQLSAIPSQYILKRWTKDAKSR-----HLLGEESEQVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEA 672
MULE pfam10551
MULE transposase domain; This domain was identified by Babu and colleagues.
 300-393 5.78e-34

MULE transposase domain; This domain was identified by Babu and colleagues.


Pssm-ID: 463145 [Multi-domain]  Cd Length: 98  Bit Score: 125.07  E-value: 5.78e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233732   300 VTFDTTYRSNRYRLPFAPFTGVNHHGQPILFGCAFIINETEASFVWLF---NTWLAAMSAHPPVSITTDHDAVIRAAIMH 376
Cdd:pfam10551   2 LLIDGTYKTNKYKMPLFTAVGVDHHGQSFPIAFGLVSNETEESFTWLFdqlIAFRECMSGLSPQVIITDRDKALKNAINL 81

                          90
                  ....*....|....*..
gi 15233732   377 VFPGARHRFCKWHILKK 393
Cdd:pfam10551  82 VFPEAQHRLCIFHINKN 98
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 88-179 1.68e-33

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 123.60  E-value: 1.68e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233732    88 FYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEkrtKDREIKRPRTITRVGCKASLSVKMQDSGKWLVS 167
Cdd:pfam03101   2 FYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQ---RTGEARRPRPSTRTGCKAMIVVKRESDGKWVVT 78

                          90
                  ....*....|..
gi 15233732   168 GFVKDHNHELVP 179
Cdd:pfam03101  79 QFVKEHNHELLP 90
ZnF_PMZ smart00575
plant mutator transposase zinc finger;
593-617 1.53e-07

plant mutator transposase zinc finger;


Pssm-ID: 128845  Cd Length: 28  Bit Score: 47.94  E-value: 1.53e-07
                           10        20
                   ....*....|....*....|....*
gi 15233732    593 CSCQMFEFSGIICRHILAVFRVTNL 617
Cdd:smart00575   3 CSCRKFQLSGIPCRHALAAAIHIGL 27
SWIM pfam04434
SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is ...
 585-612 2.19e-07

SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organized into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts.


Pssm-ID: 309540  Cd Length: 38  Bit Score: 47.80  E-value: 2.19e-07
                          10        20
                  ....*....|....*....|....*...
gi 15233732   585 NVLEMRANCSCQMFEFSGIICRHILAVF 612
Cdd:pfam04434   7 LDGLEKASCSCPDFQLNGIPCKHALAVL 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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