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Conserved domains on  [gi|15236544|ref|NP_194912|]
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early nodulin-like protein 15 [Arabidopsis thaliana]

Protein Classification

early nodulin-like family protein( domain architecture ID 10181143)

early nodulin-like family protein belongs to the phytocyanin-like group of blue copper proteins from the cupredoxin superfamily, and may be involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OsENODL1_like cd11019
Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early ...
 26-128 1.45e-55

Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early nodulin-like protein (OsENODL1) from Oryza sativa and similar proteins. It belongs to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Phytocyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. OsENODL1 expression occurs specifically at the late developmental stage of the seeds. Members of this subgroup appear to have lost the T1 copper binding site.


:

Pssm-ID: 259905  Cd Length: 103  Bit Score: 170.53  E-value: 1.45e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236544  26 EVTVGGKSGdWKIPPSSSFSFNEWAQKARFKVGDFIVFKYEAGKDSVLQVTREAYEKCNTTSPKASYTDGNTKVKLDQAG 105
Cdd:cd11019   2 EFKVGGKDG-WKVPPSASESYNQWAERNRFQVGDSLVFKYDKGNDSVLEVTKEDYDSCNTSSPIARFNDGNTKFTLDRSG 80

                        90       100
                ....*....|....*....|...
gi 15236544 106 PVYFVSGTEGHCQKGQKLRLVVI 128
Cdd:cd11019  81 PFYFISGAPGHCEKGQKLIVVVM 103
 
Name Accession Description Interval E-value
OsENODL1_like cd11019
Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early ...
 26-128 1.45e-55

Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early nodulin-like protein (OsENODL1) from Oryza sativa and similar proteins. It belongs to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Phytocyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. OsENODL1 expression occurs specifically at the late developmental stage of the seeds. Members of this subgroup appear to have lost the T1 copper binding site.


Pssm-ID: 259905  Cd Length: 103  Bit Score: 170.53  E-value: 1.45e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236544  26 EVTVGGKSGdWKIPPSSSFSFNEWAQKARFKVGDFIVFKYEAGKDSVLQVTREAYEKCNTTSPKASYTDGNTKVKLDQAG 105
Cdd:cd11019   2 EFKVGGKDG-WKVPPSASESYNQWAERNRFQVGDSLVFKYDKGNDSVLEVTKEDYDSCNTSSPIARFNDGNTKFTLDRSG 80

                        90       100
                ....*....|....*....|...
gi 15236544 106 PVYFVSGTEGHCQKGQKLRLVVI 128
Cdd:cd11019  81 PFYFISGAPGHCEKGQKLIVVVM 103
Cu_bind_like pfam02298
Plastocyanin-like domain; This family represents a domain found in flowering plants related to ...
 36-121 1.44e-29

Plastocyanin-like domain; This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues.


Pssm-ID: 280462  Cd Length: 84  Bit Score: 103.97  E-value: 1.44e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236544    36 WKIPPSSSFSfnEWAQKARFKVGDFIVFKYEAGKDSVLQVTREAYEKCNTTSPKASYTDGNTKVKLDQAGPVYFVSGTEG 115
Cdd:pfam02298   1 WTVNAESDYT--TWAQGKTFRVGDTLVFKYDSDFHNVVEVTKADYESCDTSKPIRNYTTGSDKVTLTKPGPNYFICGVPG 78


                  ....*.
gi 15236544   116 HCQKGQ 121
Cdd:pfam02298  79 HCKFGM 84
PLN03148 PLN03148
Blue copper-like protein; Provisional
 10-160 1.49e-15

Blue copper-like protein; Provisional


Pssm-ID: 178693  Cd Length: 167  Bit Score: 70.29  E-value: 1.49e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236544   10 IFLCISVFF-FSSVNANEVTVGGKSGdWKipPSSSFSFneWAQKARFKVGDFIVFKYEAGKDSVLQVTREAYEKCNTTSP 88
Cdd:PLN03148   5 LLFCFFALFsASATTATDHIVGANKG-WN--PGINYTL--WANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGA 79

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15236544   89 KASYTDGNTKVKLDQAGPVYFVSGTeGHCQKGQKLRLVV--ITPRNSAFSPGPSPSEFDGPAVAPTSGAAKLAG 160
Cdd:PLN03148  80 AGNWTSGKDFIPLNKAKRYYFICGN-GQCFNGMKVTILVhpLPPPPSHTAAANGAKSHSAAPAAFHKGLVALRG 152
 
Name Accession Description Interval E-value
OsENODL1_like cd11019
Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early ...
 26-128 1.45e-55

Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early nodulin-like protein (OsENODL1) from Oryza sativa and similar proteins. It belongs to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Phytocyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. OsENODL1 expression occurs specifically at the late developmental stage of the seeds. Members of this subgroup appear to have lost the T1 copper binding site.


Pssm-ID: 259905  Cd Length: 103  Bit Score: 170.53  E-value: 1.45e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236544  26 EVTVGGKSGdWKIPPSSSFSFNEWAQKARFKVGDFIVFKYEAGKDSVLQVTREAYEKCNTTSPKASYTDGNTKVKLDQAG 105
Cdd:cd11019   2 EFKVGGKDG-WKVPPSASESYNQWAERNRFQVGDSLVFKYDKGNDSVLEVTKEDYDSCNTSSPIARFNDGNTKFTLDRSG 80

                        90       100
                ....*....|....*....|...
gi 15236544 106 PVYFVSGTEGHCQKGQKLRLVVI 128
Cdd:cd11019  81 PFYFISGAPGHCEKGQKLIVVVM 103
Phytocyanin cd04216
Phytocyanins are plant blue or type I copper proteins; Phytocyanins are plant blue or type I ...
 26-127 4.26e-37

Phytocyanins are plant blue or type I copper proteins; Phytocyanins are plant blue or type I copper proteins. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. Phytocyanins are classified into four groups: stellacyanin, plantacyanin, uclacyanin and early nodulin groups. Stellacyanin appears to be associated with the plant cell wall; it may be involved in oxidative reactions to build polymeric material making up the cell wall. Plantacyanin is shown to play a role in reproduction in Arabidopsis. Plantacyanins may also be stress-related proteins and may be involved in plant defense responses. The early nodulin-like protein (OsENODL1) from Oryza sativa is expressed specifically at the late developmental stage of the seeds.


Pssm-ID: 259878 [Multi-domain]  Cd Length: 98  Bit Score: 123.52  E-value: 4.26e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236544  26 EVTVGGKSGdWKIPPSssfsFNEWAQKARFKVGDFIVFKYEAGKDSVLQVTREAYEKCNTTSPKASYTDGNTKVKLDQAG 105
Cdd:cd04216   2 DYTVGDSNG-WDLPVN----YTAWASGKTFRVGDSLVFNYNAGAHSVVEVNEADYDSCDTSNPINTYTSGNDSVTLTKPG 76

                        90       100
                ....*....|....*....|..
gi 15236544 106 PVYFVSGTEGHCQKGQKLRLVV 127
Cdd:cd04216  77 TRYFICGVPGHCQSGMKLAINV 98
Cu_bind_like pfam02298
Plastocyanin-like domain; This family represents a domain found in flowering plants related to ...
 36-121 1.44e-29

Plastocyanin-like domain; This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues.


Pssm-ID: 280462  Cd Length: 84  Bit Score: 103.97  E-value: 1.44e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236544    36 WKIPPSSSFSfnEWAQKARFKVGDFIVFKYEAGKDSVLQVTREAYEKCNTTSPKASYTDGNTKVKLDQAGPVYFVSGTEG 115
Cdd:pfam02298   1 WTVNAESDYT--TWAQGKTFRVGDTLVFKYDSDFHNVVEVTKADYESCDTSKPIRNYTTGSDKVTLTKPGPNYFICGVPG 78


                  ....*.
gi 15236544   116 HCQKGQ 121
Cdd:pfam02298  79 HCKFGM 84
Stellacyanin cd13920
Stellacyanin is a subclass of phytocyanins, a plant type I copper protein; Stellacyanin is a ...
 28-127 1.77e-28

Stellacyanin is a subclass of phytocyanins, a plant type I copper protein; Stellacyanin is a subclass of the phytocyanins, a ubiquitous family of plant cupredoxins. Stellacyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. The copper is tetrahedrally coordinated by a cysteine, 2 histidines, and a glutamine residue. The glutamine residue substitutes for a methione ligand typically found in other blue copper proteins. The exact function of stellacyanin is unknown. However, stellacyanin appears to be associated with the plant cell wall; it may be involved in oxidative reactions to build polymeric material making up the cell wall.


Pssm-ID: 259987 [Multi-domain]  Cd Length: 101  Bit Score: 101.62  E-value: 1.77e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236544  28 TVGGKSGdWKIPPSSSFsFNEWAQKARFKVGDFIVFKYEAGKDSVLQVTREAYEKCNTTSPKASYTDGNTKVKLDQAGPV 107
Cdd:cd13920   4 IVGGSLG-WSIPPNASF-YTDWAANRTFRVGDSLVFNFEAGVHNVVEVSKEEYDNCTTTNPIKVFTTGPVIITLNETGTR 81

                        90       100
                ....*....|....*....|
gi 15236544 108 YFVSGTEGHCQKGQKLRLVV 127
Cdd:cd13920  82 YFICTVGNHCSLGQKVSINV 101
Mavicyanin cd11014
Mavicyanin is a subclass of phytocyanins, a plant blue copper protein; Mavicyanin is a ...
 31-127 1.61e-24

Mavicyanin is a subclass of phytocyanins, a plant blue copper protein; Mavicyanin is a glycosylated protein isolated from Cucurbita pepo medullosa (zucchini) peelings. It belongs to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Mavicyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. The copper is tetrahedrally coordinated by a cysteine, 2 histidines, and a glutamine residue, like in the case of stellacyanin. The biological roles of mavicyanin have not been elucidated yet.


Pssm-ID: 259900  Cd Length: 101  Bit Score: 91.69  E-value: 1.61e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236544  31 GKSGDWKIPpsSSFSFNEWAQKARFKVGDFIVFKYEAGKDSVLQVTREAYEKCNTTSPKASYTDGNTKVKLDQAGPVYFV 110
Cdd:cd11014   6 GDSDGWTVY--DSDYYYKWSSSKTFHVGDSLIFQYNKEFHDVTEVTGEEFESCNSTSPIAVYNTGHDIIKLTKPGQYYFI 83

                        90
                ....*....|....*..
gi 15236544 111 SGTEGHCQKGQKLRLVV 127
Cdd:cd11014  84 CGVPGHCDSGQKLQVNV 100
Plantacyanin cd11013
Plantacyanin is a subclass of phytocyanins, plant type I copper proteins; Plantacyanins belong ...
 26-123 1.35e-18

Plantacyanin is a subclass of phytocyanins, plant type I copper proteins; Plantacyanins belong to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Plantacyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. The exact function of plantacyanin is unknown. However plantacyanin is shown to play a role in reproduction in Arabidopsis. Plantacyanins may also be stress-related proteins and be involved in plant defense responses.


Pssm-ID: 259899  Cd Length: 95  Bit Score: 76.24  E-value: 1.35e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236544  26 EVTVGGKSGdWkippssSFSFNEWAQKARFKVGDFIVFKYEAGKDSVLQVTREAYEKCNTTSPKASYTDGNTKVKLDQaG 105
Cdd:cd11013   2 TYVVGDSIG-W------TFGVVGWPNGKTFRAGDVLVFNYDPSAHNVVVVDEGGYRTCKAPPGAIVYTSGDDKITLPK-G 73

                        90
                ....*....|....*...
gi 15236544 106 PVYFVSGTEGHCQKGQKL 123
Cdd:cd11013  74 VNYFICSFPGHCTSGMKI 91
Phytocyanin_like_1 cd11017
A subclass of phytocyanins, plant blue or type I copper proteins; Phytocyanins are plant blue ...
 28-127 1.63e-17

A subclass of phytocyanins, plant blue or type I copper proteins; Phytocyanins are plant blue or type I copper proteins. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. Phytocyanins are classified into four groups: stellacyanin, plantacyanin, uclacyanin and early nodulin groups. Members of this unknown subgroup appear to have lost the T1 copper binding site.


Pssm-ID: 259903  Cd Length: 99  Bit Score: 73.58  E-value: 1.63e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236544  28 TVGGKSGDWKippsSSFSFNEWAQKARFKVGDFIVFKYEAGKDSVLQVTREAYEKCNTTSPKASYTDGNTKV-KLDQAGP 106
Cdd:cd11017   4 TVGGNRIGWN----PNINYTDWAKMHGFYSGDWLVFRYQRGRHNVVQVNETGYDNCDASNPISNYSSGGRDIfQLNETKR 79

                        90       100
                ....*....|....*....|.
gi 15236544 107 VYFVSGtEGHCQKGQKLRLVV 127
Cdd:cd11017  80 YYFICG-RGYCYGGMKLAITV 99
PLN03148 PLN03148
Blue copper-like protein; Provisional
 10-160 1.49e-15

Blue copper-like protein; Provisional


Pssm-ID: 178693  Cd Length: 167  Bit Score: 70.29  E-value: 1.49e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236544   10 IFLCISVFF-FSSVNANEVTVGGKSGdWKipPSSSFSFneWAQKARFKVGDFIVFKYEAGKDSVLQVTREAYEKCNTTSP 88
Cdd:PLN03148   5 LLFCFFALFsASATTATDHIVGANKG-WN--PGINYTL--WANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGA 79

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15236544   89 KASYTDGNTKVKLDQAGPVYFVSGTeGHCQKGQKLRLVV--ITPRNSAFSPGPSPSEFDGPAVAPTSGAAKLAG 160
Cdd:PLN03148  80 AGNWTSGKDFIPLNKAKRYYFICGN-GQCFNGMKVTILVhpLPPPPSHTAAANGAKSHSAAPAAFHKGLVALRG 152
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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