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Conserved domains on  [gi|30687718|ref|NP_194505|]
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binding protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CDC14 super family cl06883
Cell division control protein 14, SIN component; Cdc14 is a component of the septation ...
 122-238 6.99e-06

Cell division control protein 14, SIN component; Cdc14 is a component of the septation initiation network (SIN) and is required for the localization and activity of Sid1. Sid1 is a protein kinase that localizes asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation.


The actual alignment was detected with superfamily member pfam08045:

Pssm-ID: 429802  Cd Length: 284  Bit Score: 46.50  E-value: 6.99e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30687718   122 VTSLDHIFSvepmKITSPSTDAEVAVALRVLEGCCLLHPQSTVLAHKhgavRVMMNVLstRGVLE-------QGACLDAL 194
Cdd:pfam08045  92 INCLDRLLG----RGSDGQNDLLILSALDLLQGLLLLHPPSRSLFSR----EIYMNLL--LDLLEpancpaiQSATLLTL 161

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 30687718   195 ISVLLDSSANQVDFGACNGIEEVAMLMRDKQADENLRLRCGEFL 238
Cdd:pfam08045 162 VTALLDTPQNTRTFESLDGLLTVTSLFKSRSTSREVKLKLVEFL 205
 
Name Accession Description Interval E-value
CDC14 pfam08045
Cell division control protein 14, SIN component; Cdc14 is a component of the septation ...
 122-238 6.99e-06

Cell division control protein 14, SIN component; Cdc14 is a component of the septation initiation network (SIN) and is required for the localization and activity of Sid1. Sid1 is a protein kinase that localizes asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation.


Pssm-ID: 429802  Cd Length: 284  Bit Score: 46.50  E-value: 6.99e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30687718   122 VTSLDHIFSvepmKITSPSTDAEVAVALRVLEGCCLLHPQSTVLAHKhgavRVMMNVLstRGVLE-------QGACLDAL 194
Cdd:pfam08045  92 INCLDRLLG----RGSDGQNDLLILSALDLLQGLLLLHPPSRSLFSR----EIYMNLL--LDLLEpancpaiQSATLLTL 161

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 30687718   195 ISVLLDSSANQVDFGACNGIEEVAMLMRDKQADENLRLRCGEFL 238
Cdd:pfam08045 162 VTALLDTPQNTRTFESLDGLLTVTSLFKSRSTSREVKLKLVEFL 205
 
Name Accession Description Interval E-value
CDC14 pfam08045
Cell division control protein 14, SIN component; Cdc14 is a component of the septation ...
 122-238 6.99e-06

Cell division control protein 14, SIN component; Cdc14 is a component of the septation initiation network (SIN) and is required for the localization and activity of Sid1. Sid1 is a protein kinase that localizes asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation.


Pssm-ID: 429802  Cd Length: 284  Bit Score: 46.50  E-value: 6.99e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30687718   122 VTSLDHIFSvepmKITSPSTDAEVAVALRVLEGCCLLHPQSTVLAHKhgavRVMMNVLstRGVLE-------QGACLDAL 194
Cdd:pfam08045  92 INCLDRLLG----RGSDGQNDLLILSALDLLQGLLLLHPPSRSLFSR----EIYMNLL--LDLLEpancpaiQSATLLTL 161

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 30687718   195 ISVLLDSSANQVDFGACNGIEEVAMLMRDKQADENLRLRCGEFL 238
Cdd:pfam08045 162 VTALLDTPQNTRTFESLDGLLTVTSLFKSRSTSREVKLKLVEFL 205
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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