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Conserved domains on  [gi|15235149|ref|NP_194286|]
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myb domain protein 18 [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03091 super family cl33633
hypothetical protein; Provisional
 6-113 6.00e-51

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 173.62  E-value: 6.00e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235149    6 YGERHRKGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLQRNGKSCRLRWINYLRPGLKRDMISAEEEETILTFHSSLGN 85
Cdd:PLN03091   8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN 87

                         90       100
                 ....*....|....*....|....*...
gi 15235149   86 KWSQIAKFLPGRTDNEIKNYWHSHLKKK 113
Cdd:PLN03091  88 RWSQIAAQLPGRTDNEIKNLWNSCLKKK 115
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 6-113 6.00e-51

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 173.62  E-value: 6.00e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235149    6 YGERHRKGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLQRNGKSCRLRWINYLRPGLKRDMISAEEEETILTFHSSLGN 85
Cdd:PLN03091   8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN 87

                         90       100
                 ....*....|....*....|....*...
gi 15235149   86 KWSQIAKFLPGRTDNEIKNYWHSHLKKK 113
Cdd:PLN03091  88 RWSQIAAQLPGRTDNEIKNLWNSCLKKK 115
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 69-110 1.64e-12

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 60.60  E-value: 1.64e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15235149    69 SAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSHL 110
Cdd:pfam00249   5 TPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 12-120 2.93e-11

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 63.27  E-value: 2.93e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235149  12 KGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLqRNGKSCRLRWINYLRPGLKRDMISAEEEETILTFHSSLGNKWSQIA 91
Cdd:COG5147  20 GGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWSTIA 98

                        90       100       110
                ....*....|....*....|....*....|...
gi 15235149  92 KFLPGRTDNEIKNYW----HSHLKKKWLKSQSL 120
Cdd:COG5147  99 DYKDRRTAQQCVERYvntlEDLSSTHDSKLQRR 131
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 69-110 6.29e-09

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 50.65  E-value: 6.29e-09
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 15235149  69 SAEEEETILTFHSSLG-NKWSQIAKFLPGRTDNEIKNYWHSHL 110
Cdd:cd00167   3 TEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
69-112 1.69e-08

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 49.91  E-value: 1.69e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 15235149     69 SAEEEETILTFHSSLG-NKWSQIAKFLPGRTDNEIKNYWHSHLKK 112
Cdd:smart00717   5 TEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 6-113 6.00e-51

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 173.62  E-value: 6.00e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235149    6 YGERHRKGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLQRNGKSCRLRWINYLRPGLKRDMISAEEEETILTFHSSLGN 85
Cdd:PLN03091   8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN 87

                         90       100
                 ....*....|....*....|....*...
gi 15235149   86 KWSQIAKFLPGRTDNEIKNYWHSHLKKK 113
Cdd:PLN03091  88 RWSQIAAQLPGRTDNEIKNLWNSCLKKK 115
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 11-116 1.19e-39

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 138.67  E-value: 1.19e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235149   11 RKGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLQRNGKSCRLRWINYLRPGLKRDMISAEEEETILTFHSSLGNKWSQI 90
Cdd:PLN03212  24 KRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLI 103

                         90       100
                 ....*....|....*....|....*.
gi 15235149   91 AKFLPGRTDNEIKNYWHSHLKKKWLK 116
Cdd:PLN03212 104 AGRIPGRTDNEIKNYWNTHLRKKLLR 129
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 69-110 1.64e-12

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 60.60  E-value: 1.64e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15235149    69 SAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSHL 110
Cdd:pfam00249   5 TPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 12-120 2.93e-11

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 63.27  E-value: 2.93e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235149  12 KGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLqRNGKSCRLRWINYLRPGLKRDMISAEEEETILTFHSSLGNKWSQIA 91
Cdd:COG5147  20 GGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWSTIA 98

                        90       100       110
                ....*....|....*....|....*....|...
gi 15235149  92 KFLPGRTDNEIKNYW----HSHLKKKWLKSQSL 120
Cdd:COG5147  99 DYKDRRTAQQCVERYvntlEDLSSTHDSKLQRR 131
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 69-110 6.29e-09

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 50.65  E-value: 6.29e-09
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 15235149  69 SAEEEETILTFHSSLG-NKWSQIAKFLPGRTDNEIKNYWHSHL 110
Cdd:cd00167   3 TEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
69-112 1.69e-08

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 49.91  E-value: 1.69e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 15235149     69 SAEEEETILTFHSSLG-NKWSQIAKFLPGRTDNEIKNYWHSHLKK 112
Cdd:smart00717   5 TEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 12-59 5.83e-08

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 48.27  E-value: 5.83e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15235149    12 KGLWSPEEDEKLRSFILSYGHsCWTTVPIKAGLqRNGKSCRLRWINYL 59
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGN-RWKKIAKLLPG-RTDNQCKNRWQNYL 46
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 15-59 3.59e-07

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 46.03  E-value: 3.59e-07
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 15235149  15 WSPEEDEKLRSFILSYGHSCWTTVPIKAGLqRNGKSCRLRWINYL 59
Cdd:cd00167   2 WTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
12-61 4.40e-07

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 45.68  E-value: 4.40e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 15235149     12 KGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLqRNGKSCRLRWINYLRP 61
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWRNLLKP 49
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 15-74 1.10e-06

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 44.99  E-value: 1.10e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235149    15 WSPEEDEKLRSFILSYGHScWTTVPiKAGLQRNGKSCRLRWINYLRPGLKRDMISAEEEE 74
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGND-WKQIA-KELGRRTPKQCFDRWRRKLNPKISRGPWSKEEDQ 58
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 69-113 7.61e-06

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 42.68  E-value: 7.61e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 15235149    69 SAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSHLKKK 113
Cdd:pfam13921   2 TEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLNPK 46
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 3-98 2.23e-05

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 45.55  E-value: 2.23e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235149   3 KTKYGERHRKGLWSPEEDEKLRSFILSYGhSCWTtvPIKAGLQRNGKSCRLRWINYLRPG--LKRDMISAEEEETILTFH 80
Cdd:COG5147 282 RRKYNIFEQRGKWTKEEEQELAKLVVEHG-GSWT--EIGKLLGRMPNDCRDRWRDYVKCGdtLKRNRWSIEEEELLDKVV 358

                        90       100
                ....*....|....*....|....*.
gi 15235149  81 SSLGN--------KWSQIAKFLPGRT 98
Cdd:COG5147 359 NEMRLeaqqssriLWLLIAQNIRNRL 384
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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