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Conserved domains on  [gi|15233479|ref|NP_193834|]
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Late embryogenesis abundant protein (LEA) family protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00121 super family cl31754
MAEBL; Provisional
 78-261 1.16e-07

MAEBL; Provisional


The actual alignment was detected with superfamily member PTZ00121:

Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 52.45  E-value: 1.16e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479    78 AQAAKDKANEgaSKAADKAYETKEQAKDKAYETKEKAKDTAYNAKEKAKDYAERTKDKVNE--GAYKAADKAEDTKEKAK 155
Cdd:PTZ00121 1331 ADAAKKKAEE--AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEkkKADEAKKKAEEDKKKAD 1408

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479   156 DYAEdtMDNAKEKARHAKEKVKEY--GEDTKEKAEGFKETVKGKAEELGEKTKETVKGAWESTKNAAQTVTEAVVGPEED 233
Cdd:PTZ00121 1409 ELKK--AAAAKKKADEAKKKAEEKkkADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD 1486

                         170       180
                  ....*....|....*....|....*...
gi 15233479   234 AEKARADMNKGVEDHRKKKAEKDQKEDD 261
Cdd:PTZ00121 1487 EAKKKAEEAKKKADEAKKAAEAKKKADE 1514
 
Name Accession Description Interval E-value
PTZ00121 PTZ00121
MAEBL; Provisional
 78-261 1.16e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 52.45  E-value: 1.16e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479    78 AQAAKDKANEgaSKAADKAYETKEQAKDKAYETKEKAKDTAYNAKEKAKDYAERTKDKVNE--GAYKAADKAEDTKEKAK 155
Cdd:PTZ00121 1331 ADAAKKKAEE--AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEkkKADEAKKKAEEDKKKAD 1408

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479   156 DYAEdtMDNAKEKARHAKEKVKEY--GEDTKEKAEGFKETVKGKAEELGEKTKETVKGAWESTKNAAQTVTEAVVGPEED 233
Cdd:PTZ00121 1409 ELKK--AAAAKKKADEAKKKAEEKkkADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD 1486

                         170       180
                  ....*....|....*....|....*...
gi 15233479   234 AEKARADMNKGVEDHRKKKAEKDQKEDD 261
Cdd:PTZ00121 1487 EAKKKAEEAKKKADEAKKAAEAKKKADE 1514
GvpP COG4980
Gas vesicle protein YhaH [General function prediction only];
142-210 7.34e-06

Gas vesicle protein YhaH [General function prediction only];


Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 43.80  E-value: 7.34e-06
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15233479 142 KAADKAEDTKEKAKDYAEDTMDNAKEKARHAKEKVKEYGEDTKEKAEGFKETVKGKAEELGEKTKETVK 210
Cdd:COG4980  35 KLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIEELKEEVEPKIEELKEEAEKLQK 103
Apolipoprotein pfam01442
Apolipoprotein A1/A4/E domain; These proteins contain several 22 residue repeats which form a ...
 71-188 6.25e-03

Apolipoprotein A1/A4/E domain; These proteins contain several 22 residue repeats which form a pair of alpha helices. This family includes: Apolipoprotein A-I. Apolipoprotein A-IV. Apolipoprotein E.


Pssm-ID: 460211 [Multi-domain]  Cd Length: 175  Bit Score: 36.47  E-value: 6.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479    71 EDTGEYYAQAAKDKANEGASKAADKAYETKEQAKDKAYETKEKAKDTAYNAKEKAKDYAERTKDKVNEgaykaadKAEDT 150
Cdd:pfam01442  65 GQNVEELRQRLEPYTEELRKRLNADAEELQEKLAPYGEELRERLEQNVDALRARLAPYAEELRQKLAE-------RLEEL 137

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 15233479   151 KEKAKDYAEDTMDNAKEKARHAKEKVKEYGEDTKEKAE 188
Cdd:pfam01442 138 KESLAPYAEEVQAQLSQRLQELREKLEPQAEDLREKLD 175
 
Name Accession Description Interval E-value
PTZ00121 PTZ00121
MAEBL; Provisional
 78-261 1.16e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 52.45  E-value: 1.16e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479    78 AQAAKDKANEgaSKAADKAYETKEQAKDKAYETKEKAKDTAYNAKEKAKDYAERTKDKVNE--GAYKAADKAEDTKEKAK 155
Cdd:PTZ00121 1331 ADAAKKKAEE--AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEkkKADEAKKKAEEDKKKAD 1408

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479   156 DYAEdtMDNAKEKARHAKEKVKEY--GEDTKEKAEGFKETVKGKAEELGEKTKETVKGAWESTKNAAQTVTEAVVGPEED 233
Cdd:PTZ00121 1409 ELKK--AAAAKKKADEAKKKAEEKkkADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD 1486

                         170       180
                  ....*....|....*....|....*...
gi 15233479   234 AEKARADMNKGVEDHRKKKAEKDQKEDD 261
Cdd:PTZ00121 1487 EAKKKAEEAKKKADEAKKAAEAKKKADE 1514
PTZ00121 PTZ00121
MAEBL; Provisional
 78-261 4.13e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 50.91  E-value: 4.13e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479    78 AQAAKDKANEGASKAADKAYETKEQAKDKAYETKEKAKDTAYNAKEK-----AKDYAERTKDKVNEGAYKAADK--AEDT 150
Cdd:PTZ00121 1344 AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKkkadeAKKKAEEDKKKADELKKAAAAKkkADEA 1423

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479   151 KEKAKDYAEdtMDNAKEKARHAK--EKVKEYGEDTKEKAEGFKETVKGKAEELGEKTKETVKGAWESTKNAAQTVTEAVV 228
Cdd:PTZ00121 1424 KKKAEEKKK--ADEAKKKAEEAKkaDEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADE 1501

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 15233479   229 GPEEDAEKARADMNKGVEDHRK----KKAEKDQKEDD 261
Cdd:PTZ00121 1502 AKKAAEAKKKADEAKKAEEAKKadeaKKAEEAKKADE 1538
PTZ00121 PTZ00121
MAEBL; Provisional
 78-261 4.46e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 47.83  E-value: 4.46e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479    78 AQAAKDKANEgaSKAADKAYETKEQAKDKAYETKEKA-----KDTAYNAKEKAKDYAERTKDKVNEGAYKAADKAEDTKE 152
Cdd:PTZ00121 1304 ADEAKKKAEE--AKKADEAKKKAEEAKKKADAAKKKAeeakkAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKAD 1381

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479   153 KAKDYAEDT--MDNAKEKARHAKEKVKEY--GEDTKEKAEGFKETV--KGKAEELGEKTKETVKGAWESTKNAAQTVTEA 226
Cdd:PTZ00121 1382 AAKKKAEEKkkADEAKKKAEEDKKKADELkkAAAAKKKADEAKKKAeeKKKADEAKKKAEEAKKADEAKKKAEEAKKAEE 1461

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 15233479   227 VVGPEEDAEKARADMNKGVE----DHRKKKAEKDQKEDD 261
Cdd:PTZ00121 1462 AKKKAEEAKKADEAKKKAEEakkaDEAKKKAEEAKKKAD 1500
GvpP COG4980
Gas vesicle protein YhaH [General function prediction only];
142-210 7.34e-06

Gas vesicle protein YhaH [General function prediction only];


Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 43.80  E-value: 7.34e-06
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15233479 142 KAADKAEDTKEKAKDYAEDTMDNAKEKARHAKEKVKEYGEDTKEKAEGFKETVKGKAEELGEKTKETVK 210
Cdd:COG4980  35 KLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIEELKEEVEPKIEELKEEAEKLQK 103
GvpP COG4980
Gas vesicle protein YhaH [General function prediction only];
109-178 8.84e-06

Gas vesicle protein YhaH [General function prediction only];


Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 43.42  E-value: 8.84e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479 109 ETKEKAKDTAYNAKEKAKDYAERTKDKVNEGAYKAADKAEDTKEKAKDYAEDTMDNAKEKARHAKEKVKE 178
Cdd:COG4980  31 ETRKKLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIEELKEEVEPKIEELKEEAEK 100
GvpP COG4980
Gas vesicle protein YhaH [General function prediction only];
123-195 1.16e-05

Gas vesicle protein YhaH [General function prediction only];


Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 43.42  E-value: 1.16e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15233479 123 EKAKDYAERTKDKVNEGAYKAADKAEDTKEKAKDYAEDTMDNAKEKARHAKEKVKEYGEDTKEKAEGFKETVK 195
Cdd:COG4980  34 KKLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIEELKEEVEPKIEELKEEAEKLQKEVE 106
PTZ00121 PTZ00121
MAEBL; Provisional
 67-261 3.12e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 45.13  E-value: 3.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479    67 KKWREDTGEYYAQAAKDKANEGASKAAD--KAYETKEQAKDKAYETKEKAKDTAYNAKEKAKdyAERTKDKVNEgAYKAA 144
Cdd:PTZ00121 1255 RKFEEARMAHFARRQAAIKAEEARKADElkKAEEKKKADEAKKAEEKKKADEAKKKAEEAKK--ADEAKKKAEE-AKKKA 1331

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479   145 DKAEDTKEKAKDYAEDTMDNAKEKARHAK--EKVKEYGEDTKEKAEGFKETVKGKAEELgEKTKETVKGAWESTKNAAQT 222
Cdd:PTZ00121 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEaaEEKAEAAEKKKEEAKKKADAAKKKAEEK-KKADEAKKKAEEDKKKADEL 1410

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 15233479   223 VTEAVVGPEEDAEKARADMNKGVEDhRKKKAEKDQKEDD 261
Cdd:PTZ00121 1411 KKAAAAKKKADEAKKKAEEKKKADE-AKKKAEEAKKADE 1448
GvpP COG4980
Gas vesicle protein YhaH [General function prediction only];
98-177 9.90e-05

Gas vesicle protein YhaH [General function prediction only];


Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 40.72  E-value: 9.90e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479  98 ETKEQAKDKAYETKEKAKDTAYNAKEKAKDYAERTKDKVNEGAYKAADKAEDTKEKakdyAEDTMDNAKEKARHAKEKVK 177
Cdd:COG4980  31 ETRKKLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIEELKEE----VEPKIEELKEEAEKLQKEVE 106
GvpP COG4980
Gas vesicle protein YhaH [General function prediction only];
143-224 1.34e-04

Gas vesicle protein YhaH [General function prediction only];


Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 40.34  E-value: 1.34e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479 143 AADKAEDTKEKAKDYAEDTMDNAKEKARHAKEKVKEYGEDTKEKAEGFKETVKGKAEELGEKTKETVKGAWESTKNAAQT 222
Cdd:COG4980  25 APKSGKETRKKLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIEELKEEVEPKIEELKEEAEKLQKE 104


                ..
gi 15233479 223 VT 224
Cdd:COG4980 105 VE 106
GvpP COG4980
Gas vesicle protein YhaH [General function prediction only];
130-201 1.76e-04

Gas vesicle protein YhaH [General function prediction only];


Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 39.95  E-value: 1.76e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15233479 130 ERTKDKVNEGAYKAADKAEDTKEKAKDYAEDTMDNAKEKARHAKEKVKEYGEDTKEKAEGFKETVKGKAEEL 201
Cdd:COG4980  30 KETRKKLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIEELKEEVEPKIEELKEEAEKL 101
GvpP COG4980
Gas vesicle protein YhaH [General function prediction only];
91-160 3.91e-04

Gas vesicle protein YhaH [General function prediction only];


Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 38.80  E-value: 3.91e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479  91 KAADKAYETKEQAKDKAYETKEKAKDTAYNAKEKAKDYAERTKDKVNEGAYKAADKAEDTKEKAKDYAED 160
Cdd:COG4980  35 KLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIEELKEEVEPKIEELKEEAEKLQKE 104
PTZ00121 PTZ00121
MAEBL; Provisional
 78-261 4.76e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.67  E-value: 4.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479    78 AQAAKDKANEgaSKAADKAYETKEQAKDKAYETKEKAKDTAYNAKEKAKDYAERTKDKVNEGAYKAADKAEDTKEKAK-- 155
Cdd:PTZ00121 1472 ADEAKKKAEE--AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKad 1549

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479   156 --DYAEDTMDNAKEKARHAKEKVKEYGEDTKEKAEGFKETVKGKAEELGEKTKETVKGAWESTKNAAQTVTEAVVGPEED 233
Cdd:PTZ00121 1550 elKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE 1629

                         170       180
                  ....*....|....*....|....*...
gi 15233479   234 AEKARADMNKGVEDHRKKKAEKDQKEDD 261
Cdd:PTZ00121 1630 EEKKKVEQLKKKEAEEKKKAEELKKAEE 1657
PTZ00121 PTZ00121
MAEBL; Provisional
 78-261 5.54e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.28  E-value: 5.54e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479    78 AQAAKDKANEGASKAADkaYETKEQAKDKAYETKEKAKDTAYNAKEKAKDYAERTKDKVNEGAyKAADKAEDTKEKAKDy 157
Cdd:PTZ00121 1393 ADEAKKKAEEDKKKADE--LKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKA-EEAKKAEEAKKKAEE- 1468

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479   158 aEDTMDNAKEKARHAK--EKVKEYGEDTKEKAEGFKETVKGKAEELGEKTKETVKGAWESTKNAAQTVTEAVVGPEedaE 235
Cdd:PTZ00121 1469 -AKKADEAKKKAEEAKkaDEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAE---E 1544

                         170       180       190
                  ....*....|....*....|....*....|
gi 15233479   236 KARADMNKGVEDHRK----KKAEKDQKEDD 261
Cdd:PTZ00121 1545 KKKADELKKAEELKKaeekKKAEEAKKAEE 1574
PTZ00465 PTZ00465
rhoptry-associated protein 1 (RAP-1); Provisional
 99-219 1.26e-03

rhoptry-associated protein 1 (RAP-1); Provisional


Pssm-ID: 185644 [Multi-domain]  Cd Length: 565  Bit Score: 39.74  E-value: 1.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479   99 TKEQAKDKAYETKE-KAKDTAYNAKEKAKDYAERTKDKVNEgaykaaDKAEDTKEKAKDYAEDTMDNAKEK-ARHAKEKV 176
Cdd:PTZ00465 410 TKEFFREAPQVTKHfLDENIAQPTKEFFRDVPQVTKKVITE------NIAQPTKEFLKEVPHTTMKVLNENiAQPAKEII 483

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 15233479  177 KEYGEDTKEKAEGFKETVKGKAEE-LGEKTKETVKGAWESTKNA 219
Cdd:PTZ00465 484 HEFGTGAKNFISAAHEGTKQFLNEtVGQPTKEFLNGALETTKDA 527
PTZ00121 PTZ00121
MAEBL; Provisional
 59-261 1.71e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 39.74  E-value: 1.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479    59 RADSAYGSKKWREDTGEYYAQAAKDKANEGASKAADKAYETKEQAKDKAYETKEKAK--DTAYNAKEKAK----DYAERT 132
Cdd:PTZ00121 1478 KAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKkaDEAKKAEEKKKadelKKAEEL 1557

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479   133 KDKVNEGAYKAADKAEDTKEKAKDYAEDTmdNAKEKARhAKEKVKEYGEDTKEKAEGFK--ETVKGKAEELGEKTKETVK 210
Cdd:PTZ00121 1558 KKAEEKKKAEEAKKAEEDKNMALRKAEEA--KKAEEAR-IEEVMKLYEEEKKMKAEEAKkaEEAKIKAEELKKAEEEKKK 1634

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15233479   211 GAWESTKNAAQTVTEAVVGPEEDAEKARADMNKGVEDHRKKKAEKDQKEDD 261
Cdd:PTZ00121 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE 1685
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 99-261 2.65e-03

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 38.82  E-value: 2.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479   99 TKEQAKDKAYETKEKAKDTAYNAKEKAKDYAERTKDKVNEGAYKAADKAEDTKEKAKDYAEDTMDNAKEKARHAKEKVKE 178
Cdd:PRK05901  12 AEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAP 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479  179 YGEDTKEKAEGFKetvkgKAEELGEKTKETVKGAWESTKNAAQTVTEAVVGPEEDAEKARADMNKGVEDHRKKKAEKDQK 258
Cdd:PRK05901  92 AKKKLKDELDSSK-----KAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVD 166


                 ...
gi 15233479  259 EDD 261
Cdd:PRK05901 167 DED 169
GvpP COG4980
Gas vesicle protein YhaH [General function prediction only];
159-235 3.14e-03

Gas vesicle protein YhaH [General function prediction only];


Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 36.49  E-value: 3.14e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15233479 159 EDTMDNAKEKARHAKEKVKEYGEDTKEKAEGFKETVKGKAEELGEKTKETVKGAWESTKNAAQTVTEAVVGPEEDAE 235
Cdd:COG4980  30 KETRKKLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIEELKEEVEPKIEELKEEAEKLQKEVE 106
GvpP COG4980
Gas vesicle protein YhaH [General function prediction only];
82-151 4.82e-03

Gas vesicle protein YhaH [General function prediction only];


Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 35.72  E-value: 4.82e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479  82 KDKANEGASKAADKAYETKEQAKDKAYETKEKAKDTAYNAKEKAKDYAERTKDKVNEGAYKAADKAEDTK 151
Cdd:COG4980  37 KDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIEELKEEVEPKIEELKEEAEKLQKEVE 106
PTZ00121 PTZ00121
MAEBL; Provisional
 78-261 5.74e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 38.20  E-value: 5.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479    78 AQAAKDKANEGASKAAD--KAYETKEQA--KDKAYETKEKA--KDTAYNAKEKAKDYAERTKDKVNEGAYKAADKAEDTK 151
Cdd:PTZ00121 1413 AAAAKKKADEAKKKAEEkkKADEAKKKAeeAKKADEAKKKAeeAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKA 1492

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479   152 EKAKDYAEDTMDNAKEK-----ARHAKEKVK----EYGEDTKEKAEGFKETVKGKAEELG---EKTKETVKGAWESTKNA 219
Cdd:PTZ00121 1493 EEAKKKADEAKKAAEAKkkadeAKKAEEAKKadeaKKAEEAKKADEAKKAEEKKKADELKkaeELKKAEEKKKAEEAKKA 1572

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 15233479   220 AQTVTEAVVGPEE--DAEKAR-ADMNKGVEDHRKKKAEKDQKEDD 261
Cdd:PTZ00121 1573 EEDKNMALRKAEEakKAEEARiEEVMKLYEEEKKMKAEEAKKAEE 1617
Apolipoprotein pfam01442
Apolipoprotein A1/A4/E domain; These proteins contain several 22 residue repeats which form a ...
 71-188 6.25e-03

Apolipoprotein A1/A4/E domain; These proteins contain several 22 residue repeats which form a pair of alpha helices. This family includes: Apolipoprotein A-I. Apolipoprotein A-IV. Apolipoprotein E.


Pssm-ID: 460211 [Multi-domain]  Cd Length: 175  Bit Score: 36.47  E-value: 6.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479    71 EDTGEYYAQAAKDKANEGASKAADKAYETKEQAKDKAYETKEKAKDTAYNAKEKAKDYAERTKDKVNEgaykaadKAEDT 150
Cdd:pfam01442  65 GQNVEELRQRLEPYTEELRKRLNADAEELQEKLAPYGEELRERLEQNVDALRARLAPYAEELRQKLAE-------RLEEL 137

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 15233479   151 KEKAKDYAEDTMDNAKEKARHAKEKVKEYGEDTKEKAE 188
Cdd:pfam01442 138 KESLAPYAEEVQAQLSQRLQELREKLEPQAEDLREKLD 175
PTZ00121 PTZ00121
MAEBL; Provisional
 28-261 7.28e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 37.81  E-value: 7.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479    28 AASSRKVSRICFATSVSQNEGRDPLDNARDSRADSAYGSKKWREdtgeyyAQAAKDKANEGASKAADKAYETKEQAKDKA 107
Cdd:PTZ00121 1542 AEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEE------AKKAEEARIEEVMKLYEEEKKMKAEEAKKA 1615

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479   108 YETKEKAKDTAYNAKEKAKDYAERTKDkvnEGAYKAADKAEDTKEKAKDYAEDTMDNAKEKARHAKEKVKEYGEDTK-EK 186
Cdd:PTZ00121 1616 EEAKIKAEELKKAEEEKKKVEQLKKKE---AEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKaAE 1692

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15233479   187 AEGFKETVKGKAEELGEKTKETVKGAWESTKNAAQTVTEAVVGPEEDAEKARADMNKGVEDHRKKKAEKDQKEDD 261
Cdd:PTZ00121 1693 ALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEE 1767
ElaB COG4575
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD ...
 121-178 7.72e-03

Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family [Translation, ribosomal structure and biogenesis];


Pssm-ID: 443632 [Multi-domain]  Cd Length: 108  Bit Score: 35.30  E-value: 7.72e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 15233479 121 AKEKAKDYAERTKDKVNEGAYKAADKAEDTKEKAKDYAEDTMDNAKEKARHAKEKVKE 178
Cdd:COG4575  28 LEELLKSTADDAGEKAAELREKAEAALDEARERLSEAEDAAVERAREAADAADDYVHE 85
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 79-262 8.67e-03

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 37.28  E-value: 8.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479   79 QAAKDKANEGASKAADKAYETKEQAKDKAYETKEKAKDTAYNAKEKAKDYAERTKDKVNEGAYKAADKAEDTKEKAKDYA 158
Cdd:PRK05901  10 LAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAK 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233479  159 EDTMDNAKEKARHAKEKVKEYGEDTKEKAEgfketvkgKAEELGEKTKETVKGAWESTKNAAQTVTEAVVGPEEDAEKAR 238
Cdd:PRK05901  90 APAKKKLKDELDSSKKAEKKNALDKDDDLN--------YVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDD 161

                        170       180
                 ....*....|....*....|....
gi 15233479  239 ADMNKGVEDHRKKKAEKDQKEDDF 262
Cdd:PRK05901 162 DDDVDDEDEEKKEAKELEKLSDDD 185
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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