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Conserved domains on  [gi|186511973|ref|NP_193505|]
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uncharacterized protein AT4G17700 [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
protein_MS5 super family cl19902
Protein MS5; Proteins are known only from species of Brassicaceae. Protein MS5 is essential ...
5-161 5.61e-32

Protein MS5; Proteins are known only from species of Brassicaceae. Protein MS5 is essential for pairing of homologs during early prophase stage of meiosis but not necessary for the initiation of DNA double-strand breaks.


The actual alignment was detected with superfamily member TIGR01572:

Pssm-ID: 450408 [Multi-domain]  Cd Length: 265  Bit Score: 114.94  E-value: 5.61e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511973    5 EFLVRVREAGGFDIEhlmDTKPSScVIGCREFD---NNDDYNAHIV-LFARMGIHKYNMIQGTNLQLSCVEKYNYRSPRV 80
Cdd:TIGR01572   1 EYYRQIRESDGFDVP---IGIPTS-LTPLYHYDcanNSRYPDGDLVkIYARVGLHRYNFLEGTNLELDHVDKFNKRMCAL 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511973   81 ySAFYITLIAKDPDACNSLVTFQTRVVEEGFNMTKLSCNIARPKPGPQENAA-LPRHSVdlEPVDVFYKGSLPEWPPEDA 159
Cdd:TIGR01572  77 -SSYYITLLAVDPDSRFLQQTFQVRVDEQKLETLDLTVEIARPKPKVTTNEPfLKPWSD--SAIDDIYKGELPEWPSDDA 153

                  ..
gi 186511973  160 FN 161
Cdd:TIGR01572 154 LM 155
 
Name Accession Description Interval E-value
A_thl_para_3677 TIGR01572
Arabidopsis paralogous family TIGR01572; This model describes a paralogous family of ...
5-161 5.61e-32

Arabidopsis paralogous family TIGR01572; This model describes a paralogous family of hypothetical proteins in Arabidopsis thaliana. No homologs are detected from other species. Length heterogeneity within the family is attributable partly to a 21-residue repeat present in from zero to three tandem copies. The central region of the repeat resembles the pattern [VIF][FY][QK]GX[LM]P[DEK]XXXDDAL.


Pssm-ID: 273698 [Multi-domain]  Cd Length: 265  Bit Score: 114.94  E-value: 5.61e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511973    5 EFLVRVREAGGFDIEhlmDTKPSScVIGCREFD---NNDDYNAHIV-LFARMGIHKYNMIQGTNLQLSCVEKYNYRSPRV 80
Cdd:TIGR01572   1 EYYRQIRESDGFDVP---IGIPTS-LTPLYHYDcanNSRYPDGDLVkIYARVGLHRYNFLEGTNLELDHVDKFNKRMCAL 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511973   81 ySAFYITLIAKDPDACNSLVTFQTRVVEEGFNMTKLSCNIARPKPGPQENAA-LPRHSVdlEPVDVFYKGSLPEWPPEDA 159
Cdd:TIGR01572  77 -SSYYITLLAVDPDSRFLQQTFQVRVDEQKLETLDLTVEIARPKPKVTTNEPfLKPWSD--SAIDDIYKGELPEWPSDDA 153

                  ..
gi 186511973  160 FN 161
Cdd:TIGR01572 154 LM 155
 
Name Accession Description Interval E-value
A_thl_para_3677 TIGR01572
Arabidopsis paralogous family TIGR01572; This model describes a paralogous family of ...
5-161 5.61e-32

Arabidopsis paralogous family TIGR01572; This model describes a paralogous family of hypothetical proteins in Arabidopsis thaliana. No homologs are detected from other species. Length heterogeneity within the family is attributable partly to a 21-residue repeat present in from zero to three tandem copies. The central region of the repeat resembles the pattern [VIF][FY][QK]GX[LM]P[DEK]XXXDDAL.


Pssm-ID: 273698 [Multi-domain]  Cd Length: 265  Bit Score: 114.94  E-value: 5.61e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511973    5 EFLVRVREAGGFDIEhlmDTKPSScVIGCREFD---NNDDYNAHIV-LFARMGIHKYNMIQGTNLQLSCVEKYNYRSPRV 80
Cdd:TIGR01572   1 EYYRQIRESDGFDVP---IGIPTS-LTPLYHYDcanNSRYPDGDLVkIYARVGLHRYNFLEGTNLELDHVDKFNKRMCAL 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511973   81 ySAFYITLIAKDPDACNSLVTFQTRVVEEGFNMTKLSCNIARPKPGPQENAA-LPRHSVdlEPVDVFYKGSLPEWPPEDA 159
Cdd:TIGR01572  77 -SSYYITLLAVDPDSRFLQQTFQVRVDEQKLETLDLTVEIARPKPKVTTNEPfLKPWSD--SAIDDIYKGELPEWPSDDA 153

                  ..
gi 186511973  160 FN 161
Cdd:TIGR01572 154 LM 155
Atha_cystat_rel TIGR01638
Arabidopsis thaliana cystatin-related protein; This model represents a family similar in ...
34-127 1.79e-03

Arabidopsis thaliana cystatin-related protein; This model represents a family similar in sequence and probably homologous to a large family of cysteine proteinase inhibitors, or cystatins, as described by pfam00031. Cystatins may help plants resist attack by insects.


Pssm-ID: 130699  Cd Length: 92  Bit Score: 35.95  E-value: 1.79e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511973   34 REFDNNDDYNAHIvlfARMGIHKYNMIQGTNLQLSCVEKYNYRsPRVYSAFYITLIAKDPDACNSLVTFQTRVVEEGFNM 113
Cdd:TIGR01638   6 RPIETNRDLLERL---SYVASKKYNDTKFLNLELVEVVRANYR-GGAKSKSYITFEARDKPDGPLGEYQQAAVVYLHRHP 81
                          90
                  ....*....|....
gi 186511973  114 TklscnIARPKPGP 127
Cdd:TIGR01638  82 I-----VCRPTPKP 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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