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Conserved domains on  [gi|15236386|ref|NP_193140|]
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selenium-binding protein 2 [Arabidopsis thaliana]

Protein Classification

selenium-binding family protein( domain architecture ID 10529529)

selenium-binding family protein similar to human methanethiol oxidase (also called selenium-binding protein 1 or 56 kDa selenium-binding protein) that catalyzes the oxidation of methanethiol, an organosulfur compound known to be produced in substantial amounts by gut bacteria, and may be involved in intra-Golgi protein transport

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SBP56 pfam05694
56kDa selenium binding protein (SBP56); This family consists of several eukaryotic selenium ...
 20-487 0e+00

56kDa selenium binding protein (SBP56); This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport. The Lotus japonicus homolog of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins, in vesicular Golgi transport.


:

Pssm-ID: 461716  Cd Length: 453  Bit Score: 865.09  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236386    20 CKSGPGYATPLAAMAGPREKLIYVTALYSGTGRDKPDYLATVDVDPSSPTFSSVIHRLKMPYIGDELHHTGWNSCSSCHG 99
Cdd:pfam05694   1 CKPGPGYASPLDAMKAPREKLAYVAALYPGTGINKPDYLATVDVDPKSPTYGQVVHRLPMPNIGDELHHFGWNACSSCHG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236386   100 DASADRRYLVLPGLISGRIYAIDTKTDPKAPSLYKVVEPKEIAEKTGLAFPHTSHCLASGDMLVSCLGDKEGNAKGnGFL 179
Cdd:pfam05694  81 DPSKERRYLIVPGLRSSRIYIVDTKTDPRAPRLVKVIEPEEVAEKTGYSRPHTVHCLPDGEIYISALGDADGNGPG-GFL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236386   180 LLDSD-FNVKSRWDKPGHGPLFGYDFWYQPRFKTMISTSWGAPKAFSKGFNLQHVADGLYGSHLHIYQWPEGEMKQIIDL 258
Cdd:pfam05694 160 LLDHEtFEVKGRWEKDRGPQLFGYDFWYQPRHNVMISSEWGAPNTFEDGFNPEDLEDGLYGHRLHFWDWSTRKHKQTIDL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236386   259 GNTGLLPLEIRFLHDPSKDTGYVGSALSSNMIRFFKNSDDTWSHEVVISVKPLKVENWILPEMPGLITDFLISLDDRFFY 338
Cdd:pfam05694 240 GEEGQMPLELRFLHDPTKAHGFVGCALSSSIWRWYKNDGGKWAAEKVIEIPAEPVEGWILPPMPPLVTDILISLDDRFLY 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236386   339 FVNWLHGDIRQYNIEDPKNPVLTGQIWVGGLLQKGspykavgedgntyqfDVPQIKGKSLRAGPQMIQLSLDGKRLYATN 418
Cdd:pfam05694 320 VSCWLHGDLRQYDISDPFNPRLTGQVRLGGIIRRA---------------PHPAVKGRRLNGGPQMVQLSLDGKRLYVTN 384

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15236386   419 SLFSAWDRQFYPEIMEKGSHIIQIDVDTDKGGLTLNPDFFVDFGDEPDGPALAHEMRYPGGDCTSDIWI 487
Cdd:pfam05694 385 SLYSSWDDQFYPDGVKKGGWMLKIDVDPETGGLSLNPNFFVDFGKEPDGPARAHEMRYPGGDCSSDIWC 453
 
Name Accession Description Interval E-value
SBP56 pfam05694
56kDa selenium binding protein (SBP56); This family consists of several eukaryotic selenium ...
 20-487 0e+00

56kDa selenium binding protein (SBP56); This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport. The Lotus japonicus homolog of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins, in vesicular Golgi transport.


Pssm-ID: 461716  Cd Length: 453  Bit Score: 865.09  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236386    20 CKSGPGYATPLAAMAGPREKLIYVTALYSGTGRDKPDYLATVDVDPSSPTFSSVIHRLKMPYIGDELHHTGWNSCSSCHG 99
Cdd:pfam05694   1 CKPGPGYASPLDAMKAPREKLAYVAALYPGTGINKPDYLATVDVDPKSPTYGQVVHRLPMPNIGDELHHFGWNACSSCHG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236386   100 DASADRRYLVLPGLISGRIYAIDTKTDPKAPSLYKVVEPKEIAEKTGLAFPHTSHCLASGDMLVSCLGDKEGNAKGnGFL 179
Cdd:pfam05694  81 DPSKERRYLIVPGLRSSRIYIVDTKTDPRAPRLVKVIEPEEVAEKTGYSRPHTVHCLPDGEIYISALGDADGNGPG-GFL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236386   180 LLDSD-FNVKSRWDKPGHGPLFGYDFWYQPRFKTMISTSWGAPKAFSKGFNLQHVADGLYGSHLHIYQWPEGEMKQIIDL 258
Cdd:pfam05694 160 LLDHEtFEVKGRWEKDRGPQLFGYDFWYQPRHNVMISSEWGAPNTFEDGFNPEDLEDGLYGHRLHFWDWSTRKHKQTIDL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236386   259 GNTGLLPLEIRFLHDPSKDTGYVGSALSSNMIRFFKNSDDTWSHEVVISVKPLKVENWILPEMPGLITDFLISLDDRFFY 338
Cdd:pfam05694 240 GEEGQMPLELRFLHDPTKAHGFVGCALSSSIWRWYKNDGGKWAAEKVIEIPAEPVEGWILPPMPPLVTDILISLDDRFLY 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236386   339 FVNWLHGDIRQYNIEDPKNPVLTGQIWVGGLLQKGspykavgedgntyqfDVPQIKGKSLRAGPQMIQLSLDGKRLYATN 418
Cdd:pfam05694 320 VSCWLHGDLRQYDISDPFNPRLTGQVRLGGIIRRA---------------PHPAVKGRRLNGGPQMVQLSLDGKRLYVTN 384

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15236386   419 SLFSAWDRQFYPEIMEKGSHIIQIDVDTDKGGLTLNPDFFVDFGDEPDGPALAHEMRYPGGDCTSDIWI 487
Cdd:pfam05694 385 SLYSSWDDQFYPDGVKKGGWMLKIDVDPETGGLSLNPNFFVDFGKEPDGPARAHEMRYPGGDCSSDIWC 453
 
Name Accession Description Interval E-value
SBP56 pfam05694
56kDa selenium binding protein (SBP56); This family consists of several eukaryotic selenium ...
 20-487 0e+00

56kDa selenium binding protein (SBP56); This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport. The Lotus japonicus homolog of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins, in vesicular Golgi transport.


Pssm-ID: 461716  Cd Length: 453  Bit Score: 865.09  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236386    20 CKSGPGYATPLAAMAGPREKLIYVTALYSGTGRDKPDYLATVDVDPSSPTFSSVIHRLKMPYIGDELHHTGWNSCSSCHG 99
Cdd:pfam05694   1 CKPGPGYASPLDAMKAPREKLAYVAALYPGTGINKPDYLATVDVDPKSPTYGQVVHRLPMPNIGDELHHFGWNACSSCHG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236386   100 DASADRRYLVLPGLISGRIYAIDTKTDPKAPSLYKVVEPKEIAEKTGLAFPHTSHCLASGDMLVSCLGDKEGNAKGnGFL 179
Cdd:pfam05694  81 DPSKERRYLIVPGLRSSRIYIVDTKTDPRAPRLVKVIEPEEVAEKTGYSRPHTVHCLPDGEIYISALGDADGNGPG-GFL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236386   180 LLDSD-FNVKSRWDKPGHGPLFGYDFWYQPRFKTMISTSWGAPKAFSKGFNLQHVADGLYGSHLHIYQWPEGEMKQIIDL 258
Cdd:pfam05694 160 LLDHEtFEVKGRWEKDRGPQLFGYDFWYQPRHNVMISSEWGAPNTFEDGFNPEDLEDGLYGHRLHFWDWSTRKHKQTIDL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236386   259 GNTGLLPLEIRFLHDPSKDTGYVGSALSSNMIRFFKNSDDTWSHEVVISVKPLKVENWILPEMPGLITDFLISLDDRFFY 338
Cdd:pfam05694 240 GEEGQMPLELRFLHDPTKAHGFVGCALSSSIWRWYKNDGGKWAAEKVIEIPAEPVEGWILPPMPPLVTDILISLDDRFLY 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15236386   339 FVNWLHGDIRQYNIEDPKNPVLTGQIWVGGLLQKGspykavgedgntyqfDVPQIKGKSLRAGPQMIQLSLDGKRLYATN 418
Cdd:pfam05694 320 VSCWLHGDLRQYDISDPFNPRLTGQVRLGGIIRRA---------------PHPAVKGRRLNGGPQMVQLSLDGKRLYVTN 384

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15236386   419 SLFSAWDRQFYPEIMEKGSHIIQIDVDTDKGGLTLNPDFFVDFGDEPDGPALAHEMRYPGGDCTSDIWI 487
Cdd:pfam05694 385 SLYSSWDDQFYPDGVKKGGWMLKIDVDPETGGLSLNPNFFVDFGKEPDGPARAHEMRYPGGDCSSDIWC 453
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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